BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482640
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:15... 1050 0.0
> AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:15350347-15351900
REVERSE LENGTH=777
Length=777
Score = 1050 bits (568), Expect = 0.0
Identities = 695/751 (93%), Gaps = 30/751 (4%)
Strand=Plus/Plus
Query 1 AGATTTTTTAGGGTTTCGAGTGAAAAGAGTAACAAGCGCGGCGGAGCCATGGTTCTCAAG 60
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 35 AGATTTTTTAGGGTTTCAAGTGAAAAGAGTAA-TAGCGCGGCGGAGCCATGGTTCTCAAG 93
Query 61 ACTGAGCTTTGCCGATTCAGTGGTCAGAAGATTTACCCTGGTAGAGGAATCAGATTTATC 120
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 94 ACTGAGCTTTGCCGATTCAGTGGCCAGAAAATTTACCCTGGTAGAGGGATCAGATTTATC 153
Query 121 CGATCCGACTCTCAGGTGTTTTTGTTTGC-CAACTCCAAATGTAAGAGGTATTTCCACAA 179
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 154 CGATCGGACTCTCAGGTGTTTTTGTTT-CTCAACTCCAAATGTAAGAGGTATTTCCACAA 212
Query 180 CAAGTTGAAGCCATCTAAGC-TTACATGGACTGCTATGTACCGAAAGCAGCACAAGAAGG 238
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 213 CAAGTTGAAGCCATCTAAGCTTTGC-TGGACTGCTATGTACCGAAAGCAGCACAAGAAGG 271
Query 239 ACGCAGCACAAGAGGCTGTCAAGAGAAGGAGACGTGCTACCAAGAAGCCTTACTCAAGGT 298
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 272 ACGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCAACTAAGAAGCCTTACTCAAGGT 331
Query 299 CGATTGTTGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGTGCAGAGAAGCCCGAAGTTC 358
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 332 CGATTGTCGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGAGCAGAGAAGCCTGAAGTTC 391
Query 359 GTGATGCAGCCAGAGAAGCTGCACTACGTGAGATAAAGGAGAGAATCAAGAAGACCAAGG 418
||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 392 GTGATGCCGCTAGAGAAGCTGCCCTACGTGAGATCAAGGAGAGAATCAAGAAGACCAAGG 451
Query 419 ACGAGAAGAAGGCTAAGAAGGTCGAGTATTCTTCCAAGCAACAGAAGTCACAAGTGAAGG 478
||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 452 ACGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGG 511
Query 479 GAAATATCCCCAAGAGTACTGCACCCAAGGCTGCTAAGATGGGCGGTGGTGGAGGCAGAC 538
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 512 GAAATATCCCCAAGAGTGCTGCACCCAAGGCTGCTAAGATGGGTGGTGGTGGAGGCAGAC 571
Query 539 GTTGAATGGAGCTATAGAGTAGCCCACTCTTCTCTCTTCACTTATCTTTCTTTCTTGTTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 GTTGAATGGAGCTATAGAGTAGCCCACTCTTCTCTCTTCACTTATCTTTCTTTCTTGTTT 631
Query 599 TGACAtt-tttt-tt-----AG---TTTT---G-----CACCAGATCTAATATATTCAGT 640
||||||| |||| || || |||| | ||||||||||||||||||||||
Sbjct 632 TGACATTGTTTTGTTTTGTCAGCCATTTTTTAGTTTTGCACCAGATCTAATATATTCAGT 691
Query 641 TTATGAAAACTTTTTGTTTGGTTATCAATTACCTTGTGTTTTTTACTCGTGATATCCAAA 700
|||||||||||||||||||||| |||||| ||||||||||| |||||| | |||||||
Sbjct 692 TTATGAAAACTTTTTGTTTGGT-ATCAATCCCCTTGTGTTTT--ACTCGT-AGATCCAAA 747
Query 701 AACTGC-AAATAGAATTTGT-AACTTGGCTT 729
|||||| ||||||||||| | ||||||||||
Sbjct 748 AACTGCTAAATAGAATTT-TCAACTTGGCTT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5