BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482642
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36640.1 | Symbols: ATECP63, ECP63 | embryonic cell protein ... 1930 0.0
> AT2G36640.1 | Symbols: ATECP63, ECP63 | embryonic cell protein
63 | chr2:15356834-15358612 REVERSE LENGTH=1592
Length=1592
Score = 1930 bits (1045), Expect = 0.0
Identities = 1292/1410 (92%), Gaps = 21/1410 (1%)
Strand=Plus/Plus
Query 1 TTTCAAGCAATCGAGGAAAAAGCAATGGCGTCAGACCAACAAAAGGCGGAGAGAGCTGAG 60
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 37 TTTCAAGCAATCGAGAAAAAAGCAATGGCGTCAGACAAACAAAAGGCGGAGAGAGCCGAG 96
Query 61 GTTGCGGCGAGGGTCGCGGCTGAGGACTTGCATGACATTAACAAATCTGGTGGTGGTGAT 120
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 97 GTTGCGGCGAGGCTAGCGGCTGAGGACTTGCATGACATTAACAAATCCGGTGGTGCTGAT 156
Query 121 GTCACAATGTATAAGGTGACGGAGAGAACAACGGAACATCCACCGGAGCAGGAGAGGCCC 180
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 157 GTCACAATGTATAAGGTGACGGAGAGAACAACTGAACATCCACCGGAGCAAGATAGGCCC 216
Query 181 GGTGTAATAGGATCGGTGTTCAGGGCTGTCCAAGGAACATATGAGCACGCTAGAGACGCT 240
||||| |||||||| ||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 217 GGTGTGATAGGATCAGTGTTCAGGGCTGTCCAAGGAACGTATGAGCATGCGAGAGACGCT 276
Query 241 GTAGTTGGAAAAACCCACGATGCGGCCGAGTCGACCAAAGAAGGAGCTCAGATAGCCTCA 300
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||
Sbjct 277 GTAGTTGGAAAAACCCACGAAGCGGCTGAGTCTACCAAAGAAGGAGCTCAGATAGCTTCA 336
Query 301 GAGAAAGCGGTTGGAGCAAAGGATGCAACCGTCGAGAAGGCTAGGGATACCGCTGATTAT 360
||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||
Sbjct 337 GAGAAAGCGGTTGGAGCAAAGGACGCAACCGTCGAGAAAGCTAAGGAAACCGCTGATTAT 396
Query 361 ACGGCGGACAAGATGGGTGAGTATAAAGACTATACGGTTGATAAAGCTAAAGAGGCTAAG 420
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 ACTGCGGAGAAGGTGGGTGAGTATAAAGACTATACGGTTGATAAAGCTAAAGAGGCTAAG 456
Query 421 GACA-AGACTGCAGAGAAGGCAAAGGAGACCGC-AAGTTATACCGCGGATAAGGCGGTGG 478
|||| | |||||||||||||| |||||||| || || |||||| ||||||||||||||||
Sbjct 457 GACACA-ACTGCAGAGAAGGCGAAGGAGACTGCTAA-TTATACTGCGGATAAGGCGGTGG 514
Query 479 AAGCAAAGGACAAGAAGGCGGAGAAGATGGGTGAATATAAGGACTATGCGGTGTATAAGG 538
|||||||||| |||| |||||||||||| ||||| || || |||||||||||| ||||||
Sbjct 515 AAGCAAAGGATAAGACGGCGGAGAAGATTGGTGAGTACAAAGACTATGCGGTGGATAAGG 574
Query 539 CAGTAGAAGCGAAGGATAAG--A-C-----A-GC---GGAGACTGCGAATTATACGGCGG 586
|||||||||| || |||||| | | | || |||||||||||||||||||||||
Sbjct 575 CAGTAGAAGCTAAAGATAAGACAGCGGAGAAGGCGAAGGAGACTGCGAATTATACGGCGG 634
Query 587 ATAAGGCTAAAGAGGCTAAGGACAAAACCGCTGAGAAGATGGGTGAGTATAAGGATTACA 646
||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||
Sbjct 635 ATAAGGCTAAAGAGGCTAAGGACAAGACGGCTGAGAAGGTTGGTGAGTATAAGGATTACA 694
Query 647 CGGTGGACAAGGCTGTGGAAGCTAAGGATTACACAGCAGAGAAGGCTATTGAAGCAAAGG 706
||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 695 CGGTGGACAAGGCCGTGGAAGCTAGGGATTACACAGCGGAGAAGGCTATTGAAGCAAAGG 754
Query 707 ATAAGACTGCGGATAAGGCCGGAGAGTATAAGGATTATACGGTGGAGAAGGGGACTGAGG 766
||||||| || || ||| | |||||||||||||| |||||||||||||||| ||| ||||
Sbjct 755 ATAAGACAGCTGAGAAGACTGGAGAGTATAAGGACTATACGGTGGAGAAGGCGACGGAGG 814
Query 767 GAAAAGATGTTGGGGTGAGTAAGCTTGGAGAGTTGAAGGATAGTGCGGTGGAAACAGCAA 826
| ||||||||| |||||||||||| |||||| ||||||||||||| || || ||||| |
Sbjct 815 GGAAAGATGTTACGGTGAGTAAGCTAGGAGAGCTGAAGGATAGTGCCGTTGAGACAGCGA 874
Query 827 AGAGAGCTATGGATTTCTTGTCTGGGAAGACAGAGGAGGCCAAAGAAAAAGCTGTGGAGA 886
|||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 875 AGAGAGCTATGGGTTTCTTGTCGGGGAAGACAGAGGAGGCCAAAGGAAAAGCTGTGGAGA 934
Query 887 CCAAAGACACTGCCAAGGAAAACATTGAGAAAGCTGGAGAAGTAACGAGGCAAAAGATGG 946
||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 935 CCAAAGATACTGCCAAGGAAAACATGGAGAAAGCTGGAGAAGTAACAAGACAAAAGATGG 994
Query 947 AGGAAATGAGATTGGAAGGTAAAGAACTCAAAGACGAAGCTGGAGCAAAGGCCCACGAGG 1006
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 995 AGGAAATGAGATTGGAAGGTAAAGAGCTCAAAGAAGAAGCTGGAGCAAAAGCCCAAGAGG 1054
Query 1007 CATCTCAAAAGACTAGGGAGAGTACTGACTCGGCTGCTGAAAAAGCCCAAGAGACCAAAG 1066
|||||||||||||||||||||||||||| |||| ||| |||||||| ||||||||||||
Sbjct 1055 CATCTCAAAAGACTAGGGAGAGTACTGAGTCGGGAGCTCAAAAAGCCGAAGAGACCAAAG 1114
Query 1067 ATTCTGCTGCCGTTAGGGGCAATGAAGC-AAAGGTGACTATACTTGGTACATTAGGGAAT 1125
||||||||||||| ||||| |||||||| ||||| |||||| ||||| |||||||||||
Sbjct 1115 ATTCTGCTGCCGTGAGGGGAAATGAAGCGAAAGG-GACTATTTTTGGTGCATTAGGGAAT 1173
Query 1126 GTAACGGAAGCCATAAAGAGCAAACTGACGATGCCATCAGACATTGTGGAGGAGACACGA 1185
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1174 GTAACGGAAGCAATAAAGAGCAAACTGACAATGCCATCAGACATTGTGGAGGAAACACGC 1233
Query 1186 GCGGCACGTGAGCATGGAGGCACGGGTAGGACGGTGGTTGAAGTCAAGGTCGAAGATACA 1245
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||
Sbjct 1234 GCGGCACGTGAGCATGGAGGGACGGGTAGGACTGTGGTTGAAGTCAAGGTCGAGGATTCA 1293
Query 1246 AAGCCGGGTAAGGTGGCGACTTCACTGAAAGCGTCGGATCAAATGACCGGTCAAACATTC 1305
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1294 AAGCCGGGTAAGGTGGCGACTTCACTGAAGGCGTCGGATCAAATGACCGGTCAAACATTC 1353
Query 1306 AACGATGTTGGACGGATGGATGATGGCGCTCGGAAAGATAAGGGAAAGCTCTGAGA-TAC 1364
||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1354 AACGACGTTGGACGGATGGATGATGATGCTCGGAAAGATAAGGGAAAGCTGTGAGAATAC 1413
Query 1365 TAGAAAA-TGACA-TGTTTTTTGGGTCTTT 1392
||||||| ||||| ||||||||||| ||||
Sbjct 1414 TAGAAAAATGACAATGTTTTTTGGGCCTTT 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5