BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482644
Length=1988
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:... 2907 0.0
> AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:15361321-15364398
REVERSE LENGTH=1985
Length=1985
Score = 2907 bits (1574), Expect = 0.0
Identities = 1858/1995 (93%), Gaps = 19/1995 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTGTTCACGCTGCATTATC-TGCGGCGGATGCTTCTTCTTCGGGATCGAGTTC 59
|||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACTGTTCATGCTGCATTA-CATGCGGCGGATGCTTCTTCTTCGGGATCGAGTTC 59
Query 60 TCCTGTGACGGCGTCGCTATACGTCGGAGACTTGCACCCTAGCGTCACCGAAGGTATACT 119
||| |||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 60 TCCAGTGACGGCGTCGTTATATGTCGGAGACTTACACCCTTCCGTCACCGAAGGTATACT 119
Query 120 CTACGACGCGTTCGCCGAGTTCAAGAGCTTAACTTCTGTTCGTCTCTGTAAAGACGCTTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTACGACGCGTTCGCCGAGTTCAAGAGCTTAACTTCTGTTCGTCTCTGTAAAGACGCTTC 179
Query 180 -TACTGGTCGCTCTCTCTGTTATGGCTACGCTAACTTTCTCTCGCGTCAAGACGCTAACC 238
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GT-CTGGTCGCTCTCTCTGTTATGGCTACGCTAACTTTCTCTCGCGTCAAGACGCTAACC 238
Query 239 TTGCCATTGAGAAAAAGAATCACAGTCTGTTGAATGGAAAAATGATTCGAGTAATGTGGT 298
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 239 TTGCCATTGAGAAAAAAAATAACAGTTTGTTGAATGGAAAAATGATTCGAGTAATGTGGT 298
Query 299 CAGTTCGAG-AGCCAGACGCTAGGAGAAATGGGGTTGGAAATGTCTTCGTTAAGAATTTG 357
| ||||||| | || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 299 CTGTTCGAGCA-CCTGATGCTAGGAGAAATGGGGTTGGAAATGTCTTTGTTAAGAATTTG 357
Query 358 CCTGAGTCAATCACCAATGCGGTTCTGCAAGATATGTTCAAGAAATTTGGGAACATTGTT 417
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCTGAGTCAGTCACCAATGCGGTTCTGCAAGATATGTTCAAGAAATTTGGGAACATTGTT 417
Query 418 TCCTGTAAGGTTGCAACTTTTGAAGATGGAAAGAGTCGGGGATATGGTTTTGTTCAGTTT 477
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 TCCTGTAAGGTTGCAACTCTTGAAGATGGAAAGAGTCGGGGATATGGTTTTGTTCAATTT 477
Query 478 GAGCAAGAAGACGCCGCACATGCTGCTATTGAGAAATTGAACAGTACCACTGTTGCTGGC 537
|||||||||||||| ||||||||||||||| ||| ||||| ||||||| |||||||| |
Sbjct 478 GAGCAAGAAGACGCTGCACATGCTGCTATTCAGACCTTGAATAGTACCATTGTTGCTGAC 537
Query 538 AAGGAGATCTATGTTGGAAAATTCATGAAAAAGACTGATCGAGCAAAAGCTGAGGAAAAG 597
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 538 AAGGAGATCTATGTTGGAAAATTCATGAAAAAGACTGATCGAGTGAAACCTGAGGAAAAG 597
Query 598 TACACAAACGTGTACATGAAGAATCTCGATGCAGATGTCAATGAGGATCTTTTAAGGGAA 657
||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 TACACGAACTTGTACATGAAGAATCTCGATGCAGATGTCAGTGAGGATCTTTTAAGGGAA 657
Query 658 AAGTTTTCAGAGTTCGGGAAAATTGTTAGCCTAGCAATTGCAAAGGATGAGAACGGATTA 717
|||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 658 AAGTTTGCAGAGTTTGGGAAAATTGTTAGCCTAGCAATTGCAAAAGATGAGAACCGATTA 717
Query 718 TGTAAAGGATATGCATTTGTCAACTTTGACAAACCAGAGGATGCAAGATGGGCAGCAGAA 777
|||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 718 TGTAGAGGATATGCATTTGTCAACTTTGACAACCCAGAGGATGCAAGACGGGCAGCTGAA 777
Query 778 ACAATGAATGGAACACGATTTGGTTCAAAGTGCCTATATGTAGGACGGGCACAGAAGAAG 837
||| ||||||||||| ||||||||| ||||| |||||||||||| |||| || |||||
Sbjct 778 ACAGTGAATGGAACAAAATTTGGTTCGAAGTGTCTATATGTAGGAAGGGCGCAAAAGAAA 837
Query 838 GCAGAACGGGAGCCACTGCTAAGGGAACAATTTAAAGAGAAACATGAAGAACAGATGATG 897
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 838 GCAGAACGGGAGCAACTGCTAAGGGAACAATTTAAAGAGAAACATGAAGAACAGAAGATG 897
Query 898 AAAGCCAAGGTGTCGAACATATATGTGAAAAACATCAATGTTGGTGTTACTGAGGAGGAG 957
| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 898 ATAGCCAAGGTGTCAAACATATATGTGAAAAACGTCAATGTTGCTGTTACTGAGGAGGAG 957
Query 958 CTGAGAAAACACTTCAGTCAATGTGGGACAATCACTTCGACAAAGCTGATGTGTGATGAG 1017
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 CTGAGAAAACACTTCAGTCAATGTGGCACAATCACTTCGACAAAGCTGATGTGTGATGAG 1017
Query 1018 AAAGGAAAAAGCAAGGGATTTGGATTTGTGTGCTTCTCAACACCTGAAGAAGCTATTGAT 1077
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAAGGAAAAAGCAAGGGGTTTGGATTTGTGTGCTTCTCAACACCTGAAGAAGCTATTGAT 1077
Query 1078 GCTGTGAAAACCTTTCATGGGAAAATGTTTCATGGGAAACCACTATATGTGGCTACTGCT 1137
||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct 1078 GCTGTGAAAACCTTTCATGGGCAAATGTTTCACGGGAAACCACTATATGTGGCTATTGCT 1137
Query 1138 CAAAAGAAAGAGGACAGGAAGATGCAGTTACAGGTTCAATTTGGGAACTGTGTGGAAG-G 1196
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1138 CAAAAGAAAGAGGACAGAAAGATGCAGTTACAGGTTCAATTTGGGAACCGTGTGGAAGCT 1197
Query 1197 AGGAGGAAGCAGCTCTTCAGCTTCTGTC-ATACCAGGGACATACGCTCCACTCTACTACA 1255
| || |||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1198 A-GAAAAAGCAGCTCTTCAGCTTCTGTCAAT-CCAGGGACATACGCTCCACTTTACTACA 1255
Query 1256 CAAATACTCATCCCGGGATGGTATATCAGTCATACCCCCCGACGTGGAAGTCTGCTAACA 1315
|||| ||||||||||||||||||||||| |||||||| | || |||||||||||||||||
Sbjct 1256 CAAACACTCATCCCGGGATGGTATATCAATCATACCCGCTGATGTGGAAGTCTGCTAACA 1315
Query 1316 TGATCAGTTCTTCATACCCTAACTCTCAAGCACTCACATATCCTCCAGTGGTTGCCAATG 1375
|||| |||| |||||||| |||||| ||||| |||||||||| ||| ||||||| ||||
Sbjct 1316 TGATTGGTTCATCATACCCAAACTCTGAAGCAGTCACATATCCCCCAATGGTTGCTAATG 1375
Query 1376 CGCCAAGAAAGATTAAGCAGAACAGAAAAGGAAAGTTGGATAGGAATGCTGTTTCGTATG 1435
||||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1376 CGCCAAGTAAGAATAGGCAGAACAGAATAGGAAAGTTGGATAGGAATGCTGTTTCGTATG 1435
Query 1436 TGCCAAATGTGTATCAGTCTACTCAAATGCTTCCTTTGTCAAGAGATTTTTCGAACCAGC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1436 TGCCAAATGTGTATCAGTCTACTCAAATGCTTCCTTTGTCAAGAGATTTTTCGAAGCAGC 1495
Query 1496 AGCTTAACGGAACCTATGGTCGTGGGAAAGAAATGAAGAAACCAATCCAACAAAGACAGT 1555
||| || | |||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1496 AGCATAGCAGAACCTATGGTCGTGGGAAAGAAATGAAGAAATCAATCCAACAGAGACAGT 1555
Query 1556 CTGAAACAATTGTGATGGAGAAGCAATTGCTCGGAGAGCTGCT-CTACCCTCTTGTGGAG 1614
|||||||| ||| |||||||| |||||||||||||||| |||| | |||||||||| |||
Sbjct 1556 CTGAAACAGTTGGGATGGAGATGCAATTGCTCGGAGAGTTGCTAC-ACCCTCTTGTCGAG 1614
Query 1615 AAACTCGAGCCCCAACTTGCCAACAAAATCACAGGGATGCTTCTGGAAATGGACAAGTCG 1674
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1615 AAACTGGAGCCCCAGCTTGCAAACAAAATCACAGGGATGCTTCTGGAAATGGACAAGTCG 1674
Query 1675 GAATTGCTTCTTTTGCTGAAATCACCAGAAGAATTGGCTGTTAGAGTCGATGAAGCGTTT 1734
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1675 GAATTGCTTCTTTTGCTGAAATCACCAGAAGACTTGGCTGTTAGAGTTGATGAAGCGTTT 1734
Query 1735 GAAGTTCTGAAATCAGCCAAGACAAATGTGACCGGTCCTAACACTCTTCGTTCTGATTTC 1794
||||||||||||||| ||||||||||| |||||| ||| ||||||| ||||||||||| |
Sbjct 1735 GAAGTTCTGAAATCATCCAAGACAAATCTGACCGCTCCAAACACTCATCGTTCTGATTAC 1794
Query 1795 TTGGCGTCTGGCATTGCTGGTGTTTCGATTAAGTGAAGGACAAAATGaaaaaaaaaaCTT 1854
|||||||||||||||||||| ||||||||||||||||| ||||| || |||| ||| ||
Sbjct 1795 TTGGCGTCTGGCATTGCTGGCGTTTCGATTAAGTGAAGAACAAAGTGGAAAACAAA-CTA 1853
Query 1855 GTTACCTCAGTTGCTACTTGCAACACAAACTCTTGTGGGATTCTTTTGtttttttttttC 1914
|||||||| |||||||||||||||| |||||||||||||||||| || ||| |||||||
Sbjct 1854 GTTACCTCGGTTGCTACTTGCAACATAAACTCTTGTGGGATTCTCTT-TTTCTTTTTTT- 1911
Query 1915 GGTATT-AGTTCTTGGATTGCTATTCTACTTTGGTTTTATTGTCTTGTGTGAAATACATT 1973
||| || ||||||||||||||||||||| |||||||||||| || |||||||||||| |
Sbjct 1912 GGT-TTCAGTTCTTGGATTGCTATTCTAGTTTGGTTTTATTTTC--GTGTGAAATACAGT 1968
Query 1974 TTCATAAATGATTTC 1988
|||| ||||||||||
Sbjct 1969 TTCAGAAATGATTTC 1983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98493469290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5