BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482645
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36670.1 | Symbols: | Eukaryotic aspartyl protease family p... 2730 0.0
> AT2G36670.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr2:15364788-15368158 REVERSE LENGTH=1842
Length=1842
Score = 2730 bits (1478), Expect = 0.0
Identities = 1723/1835 (94%), Gaps = 42/1835 (2%)
Strand=Plus/Plus
Query 1 tctctctctctctctgacagttctttttgtctctctctctGCTCGATGCGAAGAATCGAG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 14 TCTCTCTCTCTCTCTGACAGTTCTTTCTGTCTCTCTCTCTGCTCGATGCGAAGAATCGAG 73
Query 61 CATTTGTGTCGCTCTCTGTAACGTCTGGC-TCTATCAGGAATATAACCAGAATCTCAACG 119
|||||||||||||||||| ||||| || | || ||| |||||||||||| |||||| |||
Sbjct 74 CATTTGTGTCGCTCTCTGGAACGTGTGTCTTC-ATCGGGAATATAACCATAATCTCCACG 132
Query 120 AGCTGCTTGAATGCGTATCTTTCGTTCCCTGATGTTGGCGGTGGCGT-TAGCGGTGGCTT 178
||||||||||||||||| | |||||||||| |||||||||| ||| | |||| |||||||
Sbjct 133 AGCTGCTTGAATGCGTACCCTTCGTTCCCTAATGTTGGCGGCGGC-TCTAGCAGTGGCTT 191
Query 179 TGGCCGTGACTGAGCTCT-CAGCATCGCCGTTACCTTCGGTCTTTGCGAAATACGCAGCT 237
|||||||||||| | | | ||||||||||||||||||||| || ||||||||||||||||
Sbjct 192 TGGCCGTGACTG-GTTTTGCAGCATCGCCGTTACCTTCGGCCTATGCGAAATACGCAGCT 250
Query 238 GGTCCGGCCAAGATTCTTCCTTTACAAAGGGCTTTTCCACTAGACGAGCCAGTGGAGCTG 297
|||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 251 GGTCCGACCAAGATTCTTCCTTTACAAAGGGCTTTTCCTCTAGACGAGCTAGTGGAGCTG 310
Query 298 AGTGAACTTAGAGCGCGTGATCGTGTCAGACACGCGCGAATCTTACTCGGCGGTGGTCGT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AGTGAACTTAGAGCGCGTGATCGTGTCAGACACGCGCGAATCTTACTCGGCGGTGGTCGT 370
Query 358 CAGAGCTCTGTTGGCGGCGTCGTCGACTTCCCAGTTCAAGGCTCCTCCGATCCTTA-C-C 415
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 371 CAGAGCTCTGTTGGCGGCGTCGTCGACTTCCCAGTTCAAGGCTCTTCCGATCCTTACCTC 430
Query 416 -TC-G-T---AG--G-----GCTTTATTTCACAAAGGTCAAATTAGGTTCTCCTCCTACA 462
|| | | || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GTCGGCTCCAAGATGACTATGCTTTATTTCACAAAGGTCAAATTAGGTTCTCCTCCTACA 490
Query 463 GAATTCAATGTTCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGTAGTTCTTGC 522
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GAGTTCAATGTTCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGTAGTTCTTGC 550
Query 523 AGTAATTGCCCTCACTCTAGTGGACTTGGAATCGACCTTCATTTCTTTGATGCTCCTGGT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AGTAATTGCCCTCACTCTAGTGGACTTGGAATCGACCTTCATTTCTTTGATGCTCCTGGT 610
Query 583 TCCTTCACTGCTGGCTCTGTTACTTGTTCAGATCCGATTTGTTCTTCAGTTTTTCAGACG 642
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TCCTTGACTGCTGGCTCTGTTACTTGTTCAGATCCGATTTGTTCTTCAGTTTTTCAGACG 670
Query 643 ACAGCTGCTCAATGTTCTGAGAATAACCAGTGTGGTTACTCCTTTCGCTATGGCGATGGA 702
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ACAGCTGCACAATGTTCTGAGAATAACCAGTGTGGTTACTCCTTTCGCTATGGCGATGGA 730
Query 703 AGTGGGACTTCAGGTTACTACATGACTGACACGTTCTATTTTGATGCGATTTTGGGAGAG 762
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 731 AGTGGGACTTCAGGTTACTACATGACTGACACCTTCTATTTTGATGCGATTTTGGGAGAG 790
Query 763 TCTTTGGTTGCAAACTCATCTGCTCCCATTGTTTTTGGCTGTAGTACCTACCAGTCCGGG 822
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 791 TCTTTGGTTGCAAACTCATCTGCTCCCATTGTTTTCGGCTGTAGTACCTACCAATCTGGG 850
Query 823 GACTTGACAAAGTCAGACAAAGCAGTCGATGGTATATTTGGATTCGGCAAGGGAAAGTTG 882
|||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 851 GACTTGACAAAGTCAGACAAAGCAGTGGATGGAATCTTTGGTTTCGGCAAGGGAAAGTTG 910
Query 883 TCCGTTGTTTCTCAATTGTCGTCAAGAGGGATTACGCCGCCAGTGTTTTCTCATTGCTTG 942
|| ||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 911 TCAGTTGTCTCTCAGTTGTCATCACGAGGGATTACGCCGCCAGTGTTTTCTCATTGCTTG 970
Query 943 AAAGGAGATGGTAGTGGAGGTGGTGTATTTGTCCTTGGCGAGATATTGGTCCCAGGAATG 1002
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 971 AAAGGAGATGGTAGTGGAGGTGGTGTCTTTGTCCTTGGCGAGATATTGGTCCCAGGAATG 1030
Query 1003 GTTTACAGTCCTCTCGTTCCATCACAGCCTCACTATAACTTAAATCTGCTGAGCATTGGC 1062
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1031 GTTTACAGTCCTCTCGTTCCATCACAACCTCACTATAACTTAAATCTGCTGAGCATTGGC 1090
Query 1063 GTGAATGGACAGATGCTGCTCA-TCGATGCAGCGGTGTTTGAAGCATCAAATACCCGTGG 1121
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1091 GTGAATGGACAGATGCTGC-CACTCGATGCAGCGGTGTTTGAAGCATCAAATACCCGTGG 1149
Query 1122 AACTATTGTTGACACGGGAACCACATTGACATATCTGGTGAAAGAGGCTTATGACCCTTT 1181
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||
Sbjct 1150 AACTATTGTTGACACAGGAACCACTTTGACATATCTGGTGAAAGAGGCTTATGATCTTTT 1209
Query 1182 TCTCAATGCTATATCAAACAGCGTGTCACAGTTGGTCACACCGATCATTTCTAATGGAGA 1241
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1210 TCTCAATGCTATATCAAACAGCGTGTCACAGTTGGTAACACCAATAATTTCTAATGGAGA 1269
Query 1242 GCAGTGCTATTTGGTCTCGACTAGCATAAGTGACATGTTTCCTCCAGTTAGTCTCAACTT 1301
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1270 GCAGTGCTATTTGGTCTCGACTAGCATAAGTGACATGTTTCCTTCAGTTAGTCTCAACTT 1329
Query 1302 TGCTGGTGGTGCATCAATGATGTTAAGGCCTCAGGACTACTTATTTCATTATGGTTTCTA 1361
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 1330 TGCTGGTGGTGCATCAATGATGTTAAGACCTCAGGACTACTTATTTCATTACGGTATCTA 1389
Query 1362 TGATGGTGCGTCCATGTGGTGCATTGGTTTTCAGAAAGCTCCGGAAGAACAAACCATTTT 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 TGATGGTGCGTCCATGTGGTGCATTGGTTTTCAGAAAGCTCCGGAAGAACAAACCATTTT 1449
Query 1422 AGGAGATCTTGTACTTAAAGACAAAGTCTTTGTGTATGATCTTGCTCGGCAACGGATTGG 1481
|||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1450 AGGAGATCTTGTGCTTAAAGATAAAGTCTTTGTATATGATCTTGCTCGACAACGGATTGG 1509
Query 1482 ATGGGCAAACTATGATTGTTCGATGTCTGTGAATGTATCGGTAACTTCAGGAAAGGATAT 1541
|||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1510 ATGGGCAAGCTATGATTGTTCAATGTCTGTGAATGTATCGATAACTTCAGGAAAGGATAT 1569
Query 1542 TGTAAACTCAGGCCAGCCATGTTTGAACATCTCAACAAGAGAAATACTCTTAAGATTCTT 1601
|||||||||||| ||||||||||||||||||||||||||||| |||||| || |||| ||
Sbjct 1570 TGTAAACTCAGGGCAGCCATGTTTGAACATCTCAACAAGAGACATACTCATACGATTATT 1629
Query 1602 CTTTAGCATCTTAGT-GGCTTTACTTCTTTGTATTTTCTTCTCCTTGACGTAAATTTATA 1660
||||||||||||| | || ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1630 CTTTAGCATCTTATTTGG-TTTACTTCTTTGTATCTTCTTCTCCTTGACGTAAATTGATA 1688
Query 1661 GAATT-TGTGGGTTTGTTTTAGAGTAGTGTAGTAATAGTGCCTTTTAATTGTAGATCAGT 1719
|| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1689 GA-TTATGTGGGTTTGTTTTAGAGTAGTGTAGTAGTAGTGCCTTTTAACTGTAGATCAGT 1747
Query 1720 CTCATTGTGAAGGAAATATGGTTACTTGT-----A-A-CTATAATACTGCAGGCCT-AA- 1770
||||||||||||||| ||||||||||||| | | |||||||| ||||||| | ||
Sbjct 1748 CTCATTGTGAAGGAA-TATGGTTACTTGTGGCCTATAACTATAATATTGCAGGCATGAAT 1806
Query 1771 -A--A--CGACAATTACTAAAGCAAATCAGTTTAG 1800
| | |||||||||| ||||||||||| |||||
Sbjct 1807 GATGAAACGACAATTACCAAAGCAAATCATTTTAG 1841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89055766830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5