BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482653
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36710.1 | Symbols: | Pectin lyase-like superfamily protein... 1943 0.0
AT2G06940.1 | Symbols: | pseudogene, similar to putative pecti... 305 5e-82
> AT2G36710.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:15389466-15391251 REVERSE LENGTH=1423
Length=1423
Score = 1943 bits (1052), Expect = 0.0
Identities = 1195/1264 (95%), Gaps = 9/1264 (1%)
Strand=Plus/Plus
Query 24 TTATCTTAACCATGCCCATCAAACCGGTTTTAACCACTCTAATAGCTCTTTTATCCATCA 83
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 41 TTATCTTAAACATGCCCATCAAACCGGTTTTAACCACCCTAATAGCTCTTTTATCCATCA 100
Query 84 TTCTTGCTCTCTACACGATCCAATTTCCATCCTCTAGATCTCTCTCTTCTATAGCCACAA 143
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 101 TTCTTGCTCTCTACACGATCCAATTGCCATCCTCTAGATCTCTCTCTTCTATAGCTACAA 160
Query 144 ATATCGGAGCATTAGCAATACATTCAACATTCTATGGACACAAAcaccaccatcatcacc 203
||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||
Sbjct 161 CTATCGGAGCATTAGCAAAATATTCAACATTTTTTGGACACAAACACCACCATCATCACC 220
Query 204 at---caccat---catcatc---atcaccacTATGAACCAATAAAATGTTGTGAGAAAT 254
|| |||||| ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 221 ATCACCACCATCACCATCATCATTATCACCACCATGAACCAATAAAATGTTGTGAGAAAT 280
Query 255 GGACGTCAAGGCTTACACACCAATACAAGACTTCTCTTGTGTTGACTGTTGATTTGCATG 314
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GGACGTCAAGGCTTAGACACCAATACAAGACTTCTCTTGTGTTGACTGTTGATTTGCATG 340
Query 315 GTTGTGGTAACTTCAGCAATGTTCAAAGCGCCATTGATGCTGTCCCTGATTTAAGCCCTT 374
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 341 GTTGTGGTAACTTCAGCAATGTTCAAAGCGCCATTGATGTTGTCCCTGATTTAAGCTCTT 400
Query 375 CCAAAACTCTCATCATCGTTAATTCGGGTTGTTATAGGGAAAAAGTTACGGTTAATGAAA 434
|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 401 CCAAGACTCTCATCATCGTTAATTCGGGTTCTTATAGGGAAAAGGTTACGGTTAATGAAA 460
Query 435 ACAAGACAAACCTTGTTATTCAAGGAAGAGGATATCAAAACACATCCATCGAATGGAACG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 ACAAGACAAACCTTGTTATTCAAGGAAGAGGATATCAAAACACATCCATCGAATGGAACG 520
Query 495 ACACAGCGAAATCGGCAGGAAACACTGCTGAGAGCTTCTCCTTTGTAGTGTTTGCAGCTA 554
||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 521 ACACAGCAAAATCCGCCGGAAACACTGCTGATAGCTTCTCCTTTGTAGTGTTTGCAGCTA 580
Query 555 ACTTCACAGCTTACAACATCAGTTTCAAGAATAATGCGCCAGAACCAGATCCTGGTGAAG 614
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 581 ACTTCACAGCTTACAACATTAGTTTCAAGAACAATGCACCAGAACCAGATCCTGGTGAAG 640
Query 615 CTGATGCACAAGCAGTATCTTTAAGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTG 674
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 641 CTGATGCACAAGCAGTAGCTCTAAGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTG 700
Query 675 GATTCTACGGGGCTCAAGACACGCTTCTAGATGATAAAGGAAGACATTTCTTCAACGATT 734
||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || |
Sbjct 701 GATTCTATGGGGCTCAAGATACACTTCTAGATGATAAAGGAAGACATTTCTTCAAAGAGT 760
Query 735 GCTTCATTCAAGGGTCCATAGATTTTATATTCGGCAATGGAAGATCACTCTACAAGGATT 794
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 761 GCTTCATTCAAGGGTCCATAGATTTTATATTTGGCAATGGAAGATCACTCTACCAGGATT 820
Query 795 GTACAATTAATTCAATAGCAAAGGGGAATACCTCGGGAGTTACCGGATCTATCACAGCTC 854
|||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 821 GTACTATCAATTCAATAGCAAAGGGGAATACATCCGGAGTTACCGGATCTATCACAGCTC 880
Query 855 AAGGAAGACAATCAGAAGATGAACAGACAGGATTCTCTTTTGTGAATTGTAAGATCGCTG 914
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 881 AAGGAAGACAATCAGAAGATGAACAGTCAGGATTCTCTTTTGTGAATTGTAAGATCGATG 940
Query 915 GTAGCGGGGAAGTGTTGCTTGGACGAGCTTGGGGAGCCTATGCTACTGTCGTGTTCTCAG 974
| || |||||| | ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 941 GCAGTGGGGAAATATTGCTTGGAAGAGCTTGGGGAGCCTATGCTACAGTCGTGTTCTCAA 1000
Query 975 ACACTTACATGTCTGGAATCATCAGTCCAGAAGGATGGAATAACTGGGGAGACCCGGCCA 1034
| |||||||||||||||||||| | |||||||||||||||||||||||||||| || |||
Sbjct 1001 ATACTTACATGTCTGGAATCATTACTCCAGAAGGATGGAATAACTGGGGAGACTCGACCA 1060
Query 1035 AAGAAAAGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 AAGAAAAGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAG 1120
Query 1095 AGAGAGTTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGATATTT 1154
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1121 AGAGGGTTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGATGTAT 1180
Query 1155 CTTTTATAGATGGTGATGAATGGCTCCGTCACACTAACATAGTCTCTGAGTTTACATCTA 1214
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1181 CTTTTATAGATGGTGATGAATGGCTCCGTCACACTAACATAGTCTCTGAGCATACATCTA 1240
Query 1215 AAGACATTAGAGACGATCTTATCGGATTTTACTAACGTATATAAGAATACACATGAATAA 1274
|||||||| |||| |||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1241 AAGACATTGGAGATGATCTTATAGGATTTTACTAACATATATAAGGATACACATGAATAA 1300
Query 1275 AAAA 1278
||||
Sbjct 1301 AAAA 1304
> AT2G06940.1 | Symbols: | pseudogene, similar to putative pectin
methylesterase, blastp match of 41% identity and 3.5e-39
P-value to GP|20521423|dbj|BAB91933.1||AP003768 putative pectin
methylesterase {Oryza sativa (japonica cultivar-group)}
| chr2:2854631-2855710 FORWARD LENGTH=1080
Length=1080
Score = 305 bits (165), Expect = 5e-82
Identities = 198/213 (93%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 581 AAGAATAATGCG-CCAGAACCAGATCCTGGTGAAGCTGATGCACAAGCAGTATCTTTAAG 639
|||||||||| | ||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 613 AAGAATAATG-GACCA-AACCAGATCCTGGTGAAGCTGATGCACAAGCAGTAGCTCTAAG 670
Query 640 GATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTGGATTCTACGGGGCTCAA-GACACGC 698
||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||
Sbjct 671 GATTGAAGGAGACCAAGCTGCCTTTTACGGTTGTTGATTCTACGGGGCT-AATGACACGC 729
Query 699 TTCTAGATGATAAAGGAAGACATTTCTTCAACGATTGCTTCATTCAAGGGTCCATAGATT 758
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 730 TACTAGATGATAAAGGAAGACATTTCTTCAAAGATTGATTCATTCAAGGGTCCATAGATT 789
Query 759 TTATATTCGGCAATGGAAGATCACTCTAC-AAG 790
||||||| |||||||||||||||| |||| |||
Sbjct 790 TTATATTTGGCAATGGAAGATCACACTACCAAG 822
Score = 268 bits (145), Expect = 7e-71
Identities = 167/177 (94%), Gaps = 3/177 (2%)
Strand=Plus/Plus
Query 410 AGGGAAAAAGTTACGGTTAATGAAAACAAGACAAACCTTGTTATTCAAGGAAGAGGATAT 469
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 344 AGGGAAAATGTTACGGTTAATGAAAACAAGACAAACCTTATTATTCAAGGAAGAGGATAT 403
Query 470 CAAAACACATCCATCGAATGGAACGACACAGCGAAATCGGCAGGAAACACTGCTG-AG-- 526
||||| |||||||||||||||||||||||||||||||| | ||||||||||||| ||
Sbjct 404 CAAAATACATCCATCGAATGGAACGACACAGCGAAATCCACCGGAAACACTGCTGAAGAT 463
Query 527 AGCTTCTCCTTTGTAGTGTTTGCAGCTAACTTCACAGCTTACAACATCAGTTTCAAG 583
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 AGCTTCTCCTTCGTAGTGTTTGCAGCTAACTTCACAGCTTACAACATCAGTTTCAAG 520
Score = 243 bits (131), Expect = 4e-63
Identities = 150/159 (94%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 224 cacTATGAACCAATAAAATGTTGTGAGAAATGGACGTCAAGGCTTACACACCAATACAAG 283
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 72 CACCATGAACCAATAAAATCTTGTGAGAAATGGACGTCAAGGCTTACACACCAATACAAG 131
Query 284 ACTTCTCTTGTGTTGACTGTTGATTTGCATGGTTGTGGTAACTTCAGCAATGTTCAAAGC 343
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 132 ACTTCTCTTGTGTTGACCG-TGATTTGCATGGTTGTGGTAACTTCAGCAATGTTCAAAGC 190
Query 344 GCCATTGATGCTGTCCCTGATTTAAGCCCTTCCAAAACT 382
|||||||||||||||| |||| |||| ||||||| |||
Sbjct 191 GCCATTGATGCTGTCCTTGATCAAAGCTCTTCCAAGACT 229
Score = 219 bits (118), Expect = 7e-56
Identities = 149/164 (91%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 789 AGGATTGTACAATTAATTCAATAGCAAAGGGGAATACCTCGGGAGTTACCGGATCTATCA 848
|||||||||| |||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 886 AGGATTGTACTATTAATTCAATAGCAAAGGGGAATACATCTAGAGTTACTGGATCTATCA 945
Query 849 CAGCTCAAGGAAGACAATCAGAAGATGAACAGA-CAGGATTCTCTTTTGTGAATTGTAAG 907
||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 946 CAGCTCAAGGAAGACAATCAGAAGATGAACA-ATCATTATTCTCTTTTGTGAATTGTAAG 1004
Query 908 ATCGCTGGTAGCGGGGAAGTGTTGCTTGGACGAGCTTGGGGAGC 951
|||| ||| || |||||| | ||||||||| |||||||||||||
Sbjct 1005 ATCGATGGAAGTGGGGAAATATTGCTTGGAAGAGCTTGGGGAGC 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5