BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482655

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36724.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   636    0.0  


> AT2G36724.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G26865.1); Has 
35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr2:15401374-15401787 FORWARD LENGTH=414
Length=414

 Score =  636 bits (344),  Expect = 0.0
 Identities = 388/409 (95%), Gaps = 4/409 (1%)
 Strand=Plus/Plus

Query  1    ATCCATTGATcaacataaacgaaaaagaaagaaaataaaaacacacaaacatatacaaca  60
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct  2    ATCCATTGATCAACATAAACGAAAAAGAAAGAAAA-AAACACACACAAACAGATACAACA  60

Query  61   aaGATGGGTAAGAATTTGAGCATGATGTTGATGATGGTGATGATAATA-TCGGCGATTGT  119
            || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct  61   AAAATGGGTAAGAATTTGAGCATGATGTTGATGATGGTGATGATAATAGT-GGCGATTCT  119

Query  120  GATCGGAGGTGAAGCAAAATCGGAGGTAGAATGCAGTATTTTGTGTCGTCCCCATTGTAA  179
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  120  GATCGGAGGTGAAGCAAAATCGGAGATAGAATGCAGTATTTTGTGTCGTCCCCATTGTAA  179

Query  180  AAGCTCATCATCAGCCGGGGAATGTTCTGACTGTCATAGAAAGTGTGACCAATCTCCACC  239
            ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct  180  AAGCTCATCATCAGCTGGAGAATGTTCTGACTGTCATAGAAAATGTGAGCAATCTCCACC  239

Query  240  ATCTGTGAAGAAACAGATTCTTAAGAACCAGCACATGAGCAAAAATATATGATCTACTTG  299
            ||| |||||||||||||||||||||||| || |||||| |||||| ||||||| ||||||
Sbjct  240  ATCAGTGAAGAAACAGATTCTTAAGAACGAGAACATGACCAAAAA-ATATGATATACTTG  298

Query  300  ACTAATTTATAACATATATGATGATTGTATGAGTGTATCGATGGACACTTTAGTCCAATT  359
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct  299  ACTAATTTATAACATATATGATGATTGTATGATTGTATCGATGGACACTTTAGTCCAACT  358

Query  360  GTTCTTGCTTATGTACTTCTATATTATCTTTTAATAATAAGAAGAGAAA  408
            ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  GTTGTTGCTTATGTACTTCTATATTATCTTTTAATAATAAGAAGAGAAA  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5