BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482657
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36740.1 | Symbols: SWC2, ATSWC2 | sequence-specific DNA bin... 2244 0.0
> AT2G36740.1 | Symbols: SWC2, ATSWC2 | sequence-specific DNA binding
transcription factors;DNA binding;DNA binding | chr2:15406690-15409835
REVERSE LENGTH=1569
Length=1569
Score = 2244 bits (1215), Expect = 0.0
Identities = 1383/1461 (95%), Gaps = 23/1461 (2%)
Strand=Plus/Plus
Query 1 GCGGTGGTCGCCGGCGAAGACGTATGCTCTTCGAAGAAACTTCTCCAGCCTAAAATTCTC 60
|||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||
Sbjct 83 GCGGCGGTCGCCGGCGAAGACGTGTGCTCGTCGAAGAAACTTCTCCAACCTAAAATTTTC 142
Query 61 TGAAGGTAGTAAGAGGTGAGCAAGTTATCAATGGAAAGCGATAAAGAAGAGCCAATGGTG 120
||| | |||||||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 143 CGAA-GAAGTAAGAGTTGAGCAAGTTATCAATGGAAATCGATGAAGAAGAGCCAATGGTG 201
Query 121 TTCTTGGACCGTACAACAAGAGCAACACGGGGTAAACGGATGACCAAGTTGCTTGATGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TTCTTGGACCGTACAACAAGAGCAACACGGGGTAAACGGATGACCAAGTTGCTTGATGAC 261
Query 181 GAAGTAGAAGAAGATGAACAGTTTTGGAATCAAGAAGCTCTTAAAGAGGAAGAACATGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GAAGTAGAAGAAGATGAACAGTTTTGGAATCAAGAAGCTCTTAAAGAGGAAGAACATGAT 321
Query 241 GATGAATATGAAGCAGAACGTGAAGTTGCTGATGAGTTTGACAGCGACTTCAATGACGAT 300
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 322 GATGAATATGAAGCAGAACGTGAGGTTGCTGATGAGTTTGACAGTGACTTCAATGACGAT 381
Query 301 GAGCCCGAGGCTGATGCAGTAGCTGAAAATGAAAAAGAAGAGAGGGATCTGCCAAAGAAG 360
||||| ||| |||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 382 GAGCCTGAGCCTGATGCAGTCGCTGTAAATGAAAAAGAATTGAGGGATCTGCCAAAGAAG 441
Query 361 CGGCTGATTTACCCTGGGAAAATTGCTTCAAAGAAAAAGAAGAAGAAGACGAAGGTAGTT 420
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 442 CGGCTGATTTACCCTGGGAAAACTGCTTCAAAGAAAAAGAAAAAGAAGACGAAGGTAGTT 501
Query 421 TCGA-AACTAGAAGATATTCGTGGAAATAAGAAGCCAGGTGAAGAATTGGGAAGTAAGGA 479
|| | |||||||| |||||| |||| || |||||||||||||||||||||||| |||||
Sbjct 502 TC-ACAACTAGAATATATTCCTGGAGATGAGAAGCCAGGTGAAGAATTGGGAAACAAGGA 560
Query 480 ACAAGACGAAAAAGAAGAGAATGAAGCACAAGAGGATATGGAAGGTGAGAAGGTCATTAG 539
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 561 ACAAGAAGAAAAAGAAGAGAATGAAGCACAAGAAGATATGGAAGGTGAGAAAGTCATTAG 620
Query 540 GAAATCAACACGGACTTCAGTGGTTGTACGGCAAGCAGAAAGAGATGCATTGCGTGCTGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GAAATCAACACGGACTTCAGTGGTTGTACGGCAAGCAGAAAGAGATGCATTGCGTGCTGC 680
Query 600 TATACAAGCAACAACAAAGCCAATACAAAGGAAAAAAGTAGGGGAGGAAAAACGGATGAC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TATACAAGCAACAACAAAGCCAATACAAAGGAAAAAAGTAGGGGAGGAAAAACGGATGAC 740
Query 660 CCAAGAAGAAATGCTGCTGGAAGCTGCTCAAACAGAAATCATGAACTTGAGGAATTTAGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCAAGAAGAAATGCTGCTGGAAGCTGCTCAAACAGAAATCATGAACTTGAGGAATTTAGA 800
Query 720 ACGTGTCTTGGCTAGGGAAGAAGAAGTAAAAAAGAAAGCGATTGTGCATAAAGCAGTCTA 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 ACGTGTCTTGGCAAGGGAAGAAGAAGTAAAAAAGAAAGCGATTGTGCATAAAGCAGTCTA 860
Query 780 CAAGGGTCCTCAGATTCGGTATCATTCAAAAGATGGATGCAACTATTTAGAATTCTGTAA 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 861 CAAGGGTCCTCAGATTCGGTATCATTCAAAAGATGGATGTAACTATTTAGAATTCTGTAA 920
Query 840 TGGTGCGTCGTTCAATTCAGAGTTGTCGACAAAGTCTGTTCCCTATCCAGAAAAAGCTGT 899
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 921 TGGTGCGTCATTCAATTCAGAGTTGTCGACGAAGTCTGTTCCCTATCCAGAAAAAGCTGT 980
Query 900 ATGTGTGATTACAGGATTACCTGCCAAGTACCGGGATCCAAAAACTGGTCTTCCTTATGC 959
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 981 ATGTGTGATTACGGGATTACCTGCCAAGTACCGGGATCCAAAAACGGGTCTTCCTTATGC 1040
Query 960 AACTAGAGACGCCTTCAAAGCAATACGCGAAAGGTTCATGGACGAACACGATGGCTTGAG 1019
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1041 AACTAGAGACGCCTTCAAAGCAATACGTGAAAGGTTCATGGACGAACATGATGGTTTGAG 1100
Query 1020 AAAGAAAATGGAGATGGGAGATTTGTTTGATACGCTAGTGGCGAAAGGTTTTACTGTGAA 1079
||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1101 AAAGAAAATGGAGATGGGAGATTTGTTTGATACACTAGTGGCGAAAGGTTTTGCAACAAA 1160
Query 1080 ACAAAAGAGAACAAAGATTCCAAAGAGTAACAAATCATTTTCCCTTAGAAGCTCAGCTCG 1139
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1161 ACAAAAGAGAACGAAGATTCCAAAGAGTAACAAATCATTTTCCCTCAGAAGCTCAGCTCG 1220
Query 1140 TTTCCTTAGCTCCGAGTCTGAAGAAGAGAGTGAAGA---TTCAGATTAATAAACACATCA 1196
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1221 TTTCCTTAGCTCCGAGTCTGAAGAAGAGAGTGAAGAAGATTCAGATTAATAAACACCTCC 1280
Query 1197 CTGATTTGAATCTGCATCTCACATGATTGTGATACAT-------GGATCTTCCCACGACC 1249
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1281 CTGATTTGAATCTGCATCTCACATGATTGTGATACATCATTCATGGATCTTCCCACGACC 1340
Query 1250 ATGGTTTTGGTTCTCAGAGATAAGAAGAGAGAAGAACATTCTTGGAGGAAGTTTTCATGA 1309
||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||
Sbjct 1341 ATGGTTTTGGTTCTCAGAGATTAGAAGCGAGAAGAACATTCATGGAGGAAATTTTCATGA 1400
Query 1310 TCAGAGCTT-GAAATGGAAACAACAACACTCTAATCAGAGATTGAATCCTCCCAACCAAA 1368
||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1401 TCAGAGCTTTGAAATGGAAACAACAACACTCTAATCAGAGATTGA-TCCTCCTAACCAAA 1459
Query 1369 ACCTCTGACACC-ATCACAGAATCAGAGAGAAAGTGTAATCTTCTATATATTGCTGAGTG 1427
|||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
Sbjct 1460 ACCTCTGACACCCATCTCAGAATCAGAGAGAAAGTGTAATCTTCTGTATATT----A--- 1512
Query 1428 CTGACCTTGTAAAGATGATAT 1448
|||||||||||||||||||||
Sbjct 1513 CTGACCTTGTAAAGATGATAT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71385174990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5