BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482661
Length=3174
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36810.1 | Symbols: | ARM repeat superfamily protein | chr2... 1965 0.0
> AT2G36810.1 | Symbols: | ARM repeat superfamily protein | chr2:15425479-15439462
REVERSE LENGTH=5411
Length=5411
Score = 1965 bits (1064), Expect = 0.0
Identities = 1133/1167 (97%), Gaps = 2/1167 (0%)
Strand=Plus/Plus
Query 710 AGTACATTCTTTGGCCTTTCCTACTGAAAGTGATTGTCCCTAAGGTCTACACTGGCGCTG 769
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1502 AGTACATTCTTTGGCCTTTCCTACTGAAAATGATTATCCCTAAGGTCTACACTGGCGCTG 1561
Query 770 TTGCATCAGTCTGTAGATGCATATCTGAACTTTGTCGTCGTAGGTCTTCAACCACCCCCA 829
|||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1562 TTGCATCAGTATGTAGATGCATAACTGAACTTTGTCGTCGTAGATCTTCAACCACCCCCA 1621
Query 830 TGTTGATCGAGTGTAAAGCTCGTGCTGACATTCCTAGCCCTGAGGAGTTGTTTACCCGTT 889
|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1622 TGTTGATCGAGTGTAAAGCTCGTGCTGATATTCCGAACCCTGAGGAGTTGTTTACCCGTT 1681
Query 890 TGGTGGTTCTTTTGCACAACCCTCTGGCAAAAGAGCAGTTAGCATCCCAAATTTTGACGG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TGGTGGTTCTTTTGCACAACCCTCTGGCAAAAGAGCAGTTAGCATCCCAAATTTTGACGG 1741
Query 950 TCCTTGGCTATCTATCCCCTCTTTTTCCCAAA-AACATCAGCATGTTTTGGCAAGATGAG 1008
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1742 TCCTTGGCTATCTATCCCCTCTTTTT-CCAAAGAACATCAGCATGTTTTGGCAAGATGAG 1800
Query 1009 ATTCCAAAAATGAAGGCGTATGTCTTTGACACAGAAGATCTGAAGCTCGATCCAACTTAC 1068
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1801 ATTCCAAAAATGAAGGCGTATGTCTATGACACAGAAGATCTGAAGCTGGATCCAACTTAC 1860
Query 1069 CAGGAAACTTGGGATGACATGATAATCAATTTTCTAGCAGAATCACTGGATGTTACCCAG 1128
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1861 CAGGAAACTTGGGATGACATGATAATCAATTTTCTAGCAGAATCATTGGATGTCACCCAG 1920
Query 1129 GATGCTGACTGGGTTATATCTCTTGGAAATGCCTTTGCAAAACAATACATTCTTTACTCT 1188
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||
Sbjct 1921 GATGCTGACTGGGTTATATCTCTTGGAAATTCTTTTGCAAAACAATATATTCTTTACGCT 1980
Query 1189 CCGGATGATGACCATGCAGCACTTCTACACCGGTGTATCGGAATACTTCTCCAGAAAGTT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 CCGGATGATGACCATGCAGCACTTCTACACCGGTGTATCGGAATACTTCTCCAGAAAGTT 2040
Query 1249 AATGATAGAGCATATGTTCGTGACAAGATTGACTGGATGTACGAACAGGCAGACATTTCT 1308
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2041 AATGATAGAGCATATGTTCGTGACAAGATTGACTGGATGTACGAACAGGCTGACATTTCT 2100
Query 1309 ATACCTGCAAATAGACTTGGTTTAGCGAAGGCCATGGGGCTGGTCGCGGCTTCTCACTTG 1368
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2101 ATACCTGCAAATAGACTGGGTTTGGCGAAGGCCATGGGGCTGGTCGCGGCTTCTCACTTG 2160
Query 1369 GACACTGTACTGGAAAAGCTGAAAATCATTGTGGATAATGTTGGGCAGAGTATTTTCCAA 1428
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2161 GACACTGTACTGGAAAAGCTGAAAATCATCGTGGATAATGTTGGGCAGAGTATTTTCCAA 2220
Query 1429 AGGATCTTATCTCTCTTCTCTGAGAGCTATAAAACAGAAGACAGTGATGATATACATGCT 1488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2221 AGGATCTTATCTCTCTTCTCTGAGAGCTATAAAACAGAAGACAGTGATGATATACACGCT 2280
Query 1489 GCTTTGGCTTTGATGTATGGATATGCTGCAAAATATGCGCCGTCATCAGTTATTGAGGCC 1548
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 2281 GCTTTGGCTTTGATGTATGGATATGCTGCAAAATATGCACCCTCATCAGTTATTGAAGCC 2340
Query 1549 AGAATAGATGCACTTGTCGGCACGAATATGCTTTCACGGCTTCTTCATGTGCGGCAGCAA 1608
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2341 AGAATAGATGCACTTGTCGGCACCAATATGCTTTCACGGCTTCTTCATGTGCGGCAACAA 2400
Query 1609 ACAGCAAAACAAGCTGTTATAACTGCTATTGATTTATTAGGTCGTGCTGTCATTAATGCT 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2401 ACAGCAAAACAAGCTGTTATAACTGCTATTGATTTATTAGGTCGTGCTGTCATAAATGCT 2460
Query 1669 GCAGAAAGTGGTGCTACATTCCCATTGAAAAGAAGAGATCAGATGCTTGATTATATATTG 1728
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 GCAGAAACTGGTGCTACATTCCCATTGAAAAGAAGAGATCAGATGCTTGATTATATATTG 2520
Query 1729 ACTTTGATGGGCCGAGATGAAAATGAAGGTTTTGCAGAATCTAGTCTCGAAGTTCTACAC 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2521 ACTTTGATGGGCCGAGATGAAAATGAAGGTTTTGCAGAATCTAGTCTCGAAGTTCTACAC 2580
Query 1789 ACTCAGGCACTTGCTCTGAATGCATGCACAACACTGGTCTCTGTGGAACCAAAGCTGACC 1848
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2581 ACTCAGGCACTCGCTCTGAATGCATGCACAACACTTGTCTCTGTGGAACCAAAGCTGACC 2640
Query 1849 GTTGAAACTCGAAATCGTGTTATGAAG 1875
||||||||||||||||||| ||||||
Sbjct 2641 ATTGAAACTCGAAATCGTGTCATGAAG 2667
Score = 1225 bits (663), Expect = 0.0
Identities = 696/712 (98%), Gaps = 2/712 (0%)
Strand=Plus/Plus
Query 1 ATGGTCGGTCTTATCACGCGGACAAAACTGAAATCAGCATTACCAAGGCTTATTCCAGCA 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 754 ATGGTCGGTCTTATCACGCGGACACAACTGAAATCAGCATTACCAAGGCTTATTCCAGCA 813
Query 61 ATACTTGAACTGTATAAGAAAGATCATGATGATGCTCTTTTGGCGACATGTAGTCTTCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 ATACTTGAACTGTATAAGAAAGATCATGATGATGCTCTTTTGGCGACATGTAGTCTTCAC 873
Query 121 AACCTTTTAAATGCCTCGTTACTTTCTGAGTCTGGTCCTCCACTGCTTGATTTTGAGGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 AACCTTTTAAATGCCTCGTTACTTTCTGAGTCTGGTCCTCCACTGCTTGATTTTGAGGAC 933
Query 181 CTCACAATTGTGCTGTCAACACTTCTTCCTGTGATCGGTATCAATAGTGAAAGAAAAAGG 240
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 934 CTCACAATTGTTCTGTCAACACTTCTTCCTGTGATCGGTATCAATAATGAAAGAAAAAGG 993
Query 241 TGCTCAGATATTTCAGTGGGACGAAAGACATACAATGAAGTGCAGCGGTGTTTTCTGACT 300
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 994 TTCTCAGATATTTCTGTGGGACGGAAGACATACAATGAAGTGCAGCGGTGTTTTCTGACT 1053
Query 301 GTTGGCTTGGTTTATCCTGAGGATTTGTTTACATTTCTTCTTAACAAATGCAAGTTGAAA 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GTTGGCTTGGTTTACCCTGAGGATTTGTTTACATTTCTTCTTAACAAATGCAAGTTGAAA 1113
Query 361 GAAGACCCTTTGACGTTTGGTGCTCTTTGCATCTTGAAACATCTGCTTCCGAGGTTGTTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GAAGACCCTTTGACGTTTGGTGCTCTTTGCATCTTGAAACATCTGCTTCCGAGGTTGTTT 1173
Query 421 GAAGCATGGCACTCAAAACGGCCTCTTTTGGTTGATACTGCAAGGTCTTTGTTAGATGAG 480
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1174 GAAGCATGGCACTCAAAACGGCCTCTTTTGGTGGATACTGCAAGTTCTTTGTTAGATGAG 1233
Query 481 CAAAGTTTAGCTGTTCGAAAAGCCCTTTCAGAGTTGATCGTGGTCATGGCTTCACACTGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 CAAAGTTTAGCTGTTCGAAAAGCCCTTTCAGAGTTGATCGTGGTCATGGCTTCACACTGC 1293
Query 541 TATCTGGCCGGTCCATCTGGGGAATTATTTGTTGAATACCTTGTACGCCATTCTGCAATA 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 TATCTGGTCGGTCCATCTGGGGAATTATTTGTTGAATACCTTGTACGCCATTCTGCAATA 1353
Query 601 GGAGAGAGTGACGATCTGAAGGCAAAAGGGGAA-TCAGTTAGTCCAACACAGCTAAGAGC 659
|||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1354 GGAGAGAGTGACCATCTGAAGGCAAAAGGGGAACT-AGTTAGTCCAACACAGCTAAGAGC 1412
Query 660 AGTTTGTGGAAAAGGTCTTCTGCTCTTGACTGTTACAATTCCGGAGATGGAG 711
|||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1413 AGTTTGTGGAAAAGGTCTTCTGCTCTTGACCGTTACAATCCCAGAGATGGAG 1464
Score = 745 bits (403), Expect = 0.0
Identities = 448/469 (96%), Gaps = 5/469 (1%)
Strand=Plus/Plus
Query 2709 GGG-AACCCTCAAGCGGTTTGCTCCACTTGTGGACATAATAAACCATTCTAGCCTCTATG 2767
||| |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 4685 GGGTAACCCTCAAGCGGTTTGCTCCACTCGTGGACATAATAAACTATTCTACCCTCTATG 4744
Query 2768 ATTCACGTGCTTTTGCTTCTGATGATAGGACTGACTATGAAAACTTCGTAAGGGATCTCT 2827
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 4745 ATTCACGTGCTTTTGGTTCTGAAGATAGAACTGACTATGAAAACTTCGTAAGGGATCTCT 4804
Query 2828 CAAAGCACTTGGTCCAAGAGTCGGAAAGAGTTGATACTTACATGGCCTCAACCATCCAGG 2887
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4805 CAAAGCACTTGGTTCAAGAGTCGGAAAGAGTTGATACTTACATGGCCTCAACCATCCAGG 4864
Query 2888 CTTTTGATGCACCGTGGCCAGTAATTCAGGCGAATGCAATACACTTCTCCACCACCATGC 2947
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4865 CTTTTGATGCACCGTGGCCAGTAATTCAGGCGAATGCAATACACTTCTCCACCACCATGT 4924
Query 2948 TGTCACTCTCAGAGGATCAGCACATAATCTCTCTCTACTACCCACAGGTGTTTGAAACGC 3007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4925 TGTCACTCTCAGAGGATCAGCACATAATCTCTCTCTACTACCCACAGGTGTTTGAAACGC 4984
Query 3008 TGGTTAGCAAAATGACCAGGTCACAAGATTCAGTTGTTAGAGCAGCATGCTCATCAGCCT 3067
|||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 4985 TGGTTAGCAAGATGACCCGGTCGCAAGATTCAGTTGTGAGAGCAGCATGCTCATCAGCCT 5044
Query 3068 TCGGGTTACTGCTAAGATCAAGCAAGTCAACACTCTGGAGAGGAGCTCGACTTGATCGG- 3126
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 5045 TTGGGTTACTGCTAAGATCAAGCAAGTCAACACTGTGGAGAGGAGCTCGACTTGA-CGGG 5103
Query 3127 ACCGACTCAGGTAGAAAATCCAATGATC-CTGAGTCTGTTAAGAAATAA 3174
|||||||||||||||||| ||||||||| | || |||||||||||||||
Sbjct 5104 ACCGACTCAGGTAGAAAAGCCAATGATCTC-GAATCTGTTAAGAAATAA 5151
Score = 466 bits (252), Expect = 6e-130
Identities = 276/288 (96%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 2422 ATGCCATCTGATTGTATGAACCACTACACAACTCAAGTTATTGGTGTAATATTAGCGTTG 2481
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 4327 ATGCCATCTGCTTGTATGAGCCACTACACAACTCAAGTTATTGGTGTAATATTAGCGTTG 4386
Query 2482 CTTGACGATCTGGAGGAGTCTGTGCAACTAACTGCTGTGTCATGCTTGTTGATGGTCACA 2541
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 4387 CTTGATGATCTGGATGAGTCTGTGCAACTAACTGCAGTGTCATGCTTGTTGATGGTTACA 4446
Query 2542 GAGTCAGCTTCTAATGATGCTGTTGAACCTATCTTGCTGAATTTATCTATTCGGCTTCGT 2601
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4447 GAGTCAGCTTCTAATGATGCTGTTGAACCTATCTTGCTGAATTTATCTGTTCGGCTTCGT 4506
Query 2602 AACCTTCAGGTTAGTATGGACCCGAAGATGAGAGCCAATGCATTTGCAGCACTTGGAGCT 2661
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4507 AACCTTCAGGTTAGTATGGACCCGAAGATGAGAGCCAATGCATTTTCAGCACTTGGAGCT 4566
Query 2662 TTAAGTAAATATGCTATTGGAGGGCAAAGGGAGGGATTTGTCGAGCAG 2709
|||||||||||||||| |||||||||| | ||||||||||| ||||||
Sbjct 4567 TTAAGTAAATATGCTACTGGAGGGCAACGTGAGGGATTTGTTGAGCAG 4614
Score = 270 bits (146), Expect = 5e-71
Identities = 154/158 (97%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 2135 GAGTACTTCTAACTTCATTTCAGGCTTTCTGCGAGTGTGTTGGTGATCTGGAGATGGGCA 2194
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3962 GAGTACTTCTAACTTCATTTCAGGCTTTCTGTGAGTGTGTTGGTGATCTGGAGATGGGCA 4021
Query 2195 AGATTTTGGCTCGTAATGGGGAGCAAAGAGAAAAAGAAAAATGGGTTGATCTTATTGGCG 2254
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 4022 AGATTTTGGCTCGTAATGGGGAGCAAATAGAAAAAGAAAAATGGGTTGGTCTAATTGGCG 4081
Query 2255 ATATTGCTGGATGCATTTCAATTAAGAGACCGAAGGAG 2292
||||||||||||||||||||||||||||||||||||||
Sbjct 4082 ATATTGCTGGATGCATTTCAATTAAGAGACCGAAGGAG 4119
Score = 231 bits (125), Expect = 2e-59
Identities = 131/134 (98%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 2002 CTTGTAGCAGCCTTGTACAGTTGCACTGCAGCTATCTGTGACAAAATCAGGCAATCTGCT 2061
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3319 CTTGTAGCAGCCTTGCATAGTTGCACTGCAGCTATCTGTGACAAAATCAGGCAATCTGCT 3378
Query 2062 GAGGGAGCCATTCAAGCGGTTACTGAATTTGTTTCAAGAAGAGGGAGTCAGCTTAGTGAC 2121
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3379 GAGGGAGCCATTCAAGCGGTTACTGAGTTTGTTTCAAGAAGAGGGAGTCAGCTTAGTGAC 3438
Query 2122 AATGATATATCAAG 2135
||||||||||||||
Sbjct 3439 AATGATATATCAAG 3452
Score = 220 bits (119), Expect = 5e-56
Identities = 125/128 (98%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1874 AGATTCTTGACCAGTTCTTCAGTATTTCCCTTTCCCTTCCAAAAGCTGTACTCACAAGCG 1933
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 3116 AGATTCTTGACCAGTTCTTCAGCATTTCCCTTTCCCTTCCAAAAGCTGTACTTACAAGCG 3175
Query 1934 GGTTGGATTCTGAAGACTCCTATAAAGCCCTGTCTTCCCTTGAGGATGTCATTGCCATTT 1993
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3176 GGTTGGATTCTGAAGACTCCTATAAAGCCCTGTCTTCCCTTGAGGATGTCATTGCCATAT 3235
Query 1994 TGAAAAGT 2001
||||||||
Sbjct 3236 TGAAAAGT 3243
Score = 169 bits (91), Expect = 2e-40
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2319 AGGTTCGACATATTTGCATGATTCTAACGAAAGCACTAAACCGTCCACAAAGATTTCAGC 2378
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4118 AGGTTCGACATATTTGCATGATTCTAACAAAAGCACTAAACCGTCCACAAAGATTTCAAA 4177
Query 2379 GGGAAGCTGCTGCCGCTGCATTGTCAGAGTTTATACGCTACAG 2421
||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4178 GGGAAGCTGCTGCTGCTGCATTGTCAGAGTTTATACGCTACAG 4220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157875369621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5