BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482664
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36835.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1077 0.0
> AT2G36835.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast
hits to 26 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:15449603-15451426
REVERSE LENGTH=730
Length=730
Score = 1077 bits (583), Expect = 0.0
Identities = 688/736 (93%), Gaps = 18/736 (2%)
Strand=Plus/Plus
Query 1 AGCTGACCACAAAGTTTTCGACTTTGCAATTTAGATAAATCTTTCTATCCA-TTTACACG 59
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 1 AGCTGACCACAAAGTTTTCTACTTTGCAATTTAGATAAATCTTTCTATCCACTTT----G 56
Query 60 ACAACAAAAATTAAGGGCTCTCAATTTCGAATTCTGCTTCAGTGTTTTCCGGCGaaaaaa 119
| | | ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 57 A-GA-ATAAATTAAGGGCTCTCAATTTCGAATTCTGCTTC-------TCCAACGAAAAAA 107
Query 120 aCG-AATCTTTAATGGCGAAGAAAGGAGGAGCAACGCTAGCTGAGGATGCACCATGGCGA 178
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 108 ACGAAATCTTTAATGGCGAAGAAAGGAGGAGCGACGCTAGCTGAGGATGCACCATGGCGA 167
Query 179 GTTTCGTCAGGAAGACCAGTGCCTAAGATCAGTCGCTCTCCGGTTTTATCTATCTCTCAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GTTTCGTCAGGAAGACCAGTGCCTAAGATCAGTCGCTCTCCGGTTTTATCTATCTCTCAA 227
Query 239 AACCCAGAATCCGATTACGCCATTTCCGTCATGAAGCATCCGAATCCAGTGGGAGGTGGG 298
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 228 AACCCAGAAACCGATTACGCCATTTCCGTCATGAAGCATCCGAATCCTGTGGGAGGTGGG 287
Query 299 TTTGCGATGGAAGCTGTACTTGAATCTGCAGGACCTGAATGCGTTGTCCCTGGCCAAGTT 358
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 288 TTTGCGATGGAAGCTGTACTTGAATCCGCAGGACCTGAATGCGTTGTTCCTGGCCAAGTA 347
Query 359 ACACCTCTTCGGTTACTTGGTGTTAAGGTGTGGCCAGTTGAAGTTGATCTTAAATTCTTG 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 348 ACACCTCTTCGGTTACTTGGTGTTAAGGTGTGGCCTGTTGAAGTTGATCTTAAATTCTTG 407
Query 419 GAACCAGTGGGAAAAGAGCTGAAAATGCTTGGGAAGTTCATGGACAACGCCGTCGAGCTG 478
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 408 GAACCAGTGGGAAAGGAGCTGAAAATGCTTGGGAAGTTCATGGACAACGCTGTCGAGCTG 467
Query 479 ATGAATAAGTCCTTCATTGACCGCTAGGCACTA-TGGATAAACGGTTATATACTTGTCAA 537
|||||||||||||||||||||||||| |||| | ||||||| |||| |||||||||||||
Sbjct 468 ATGAATAAGTCCTTCATTGACCGCTAAGCAC-AGTGGATAACCGGTCATATACTTGTCAA 526
Query 538 GGTTCTACACCTGGATTTTTGGAATTGCGGGAGATCTGTCTAGTCGCCAGAACTTGTTAG 597
||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 527 GGTTCTACACCTGGAGTTTTGGGATTGCGGGATATCTGTCTAGTCGCCAGAACTTGTTAG 586
Query 598 TGGCAGAGAGATCTGGTATGAGCAA-GTTGAATATGGTGTGCGTGTGTTTGTATAGAGGA 656
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 587 TGGCAGAGAGATCTGATATGAGCAAAGTTGAATACGGTGTGCGTGTGTTTGTATAGAGGA 646
Query 657 TTTTTACAGACAGAATCTATACACTATCAAATCATTAATTTGAATGACAGTTTTAAAAAT 716
||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||
Sbjct 647 TTTTTACAGACAGAATCTATATACTATCAAATAATTGGTTTTAATGACAGTTTTAAAAAT 706
Query 717 TTATTTAAAGGTTTAT 732
| |||||||| ||||
Sbjct 707 GTCTTTAAAGGCTTAT 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5