BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482665
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36840.1 | Symbols: | ACT-like superfamily protein | chr2:1... 2049 0.0
AT5G23410.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 254 2e-66
AT5G42730.1 | Symbols: | pseudogene similar to ACT domain-cont... 248 1e-64
> AT2G36840.1 | Symbols: | ACT-like superfamily protein | chr2:15451573-15453714
REVERSE LENGTH=1658
Length=1658
Score = 2049 bits (1109), Expect = 0.0
Identities = 1300/1388 (94%), Gaps = 29/1388 (2%)
Strand=Plus/Plus
Query 1 AAACATGGCTTCAAGTACAACAACACGACGAACCACTTAAAGCT---CA--AC--C-CCT 52
|||||||| ||||||||||||||||||||||| ||||| ||||| || || | |||
Sbjct 22 AAACATGGGTTCAAGTACAACAACACGACGAATCACTT-AAGCTCAACACGACAACACCT 80
Query 53 TTGActctctctctct-TTCT-C--AT---CTCC-AA-TAAAACCAGTCACAGAAGC-GC 102
|||||||| ||| ||| ||| | || || || | |||||| |||||||||| |
Sbjct 81 TTGACTCTATCTTTCTCATCTCCAAATAAAAACCAAACT-AAACCA-TCACAGAAGCTG- 137
Query 103 AAAAACTCCAAAAGTTTAAGGTACAAGATGGGAAATTTGTCGGACGACGTAGTGATAATC 162
||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 138 AAAAAGTTCAAAACTTTAAGGTACAAGATGGGAATTTTGTCGGACGACGTAGTGATAATC 197
Query 163 AGTCAATCGGAGAAAGAAGGTGACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AGTCAATCGGAGAAAGAAGGTGACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACT 257
Query 223 GGTCTAGGTTGTGATCTCTGTCGTATCCTCCTCTTCTTCGGCCTCAACATTGTCAGAGGA 282
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GGTCTGGGTTGTGATCTCTGTCGTATCCTCCTCTTCTTCGGCCTCAACATTGTCAGAGGA 317
Query 283 GATGTATCGACTGATGGGAAATGGTGTTACTTGGTCTTCTGGGTGATTGGGAAACCTAAC 342
||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 318 GATGTCTCAACTGATGGAAAATGGTGCTACTTGGTCTTCTGGGTGATTGGGAAACCAAAC 377
Query 343 ACAAGATGGAATCTGTTGAAGATGAGACTTGTAGAGGCGAGCCCTTCTTTTTCTTGGGCC 402
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 378 ACGAGATGGAATCTGTTGAAGATGAGACTTGTAGAGGCAAGTCCTTCTTTTTCTTGGGCC 437
Query 403 TTTGGTATCTCAAGATGTTACCTTTCTGATTCTGAGTCTCAGCCTCCCAAGCTTCCTGAT 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TTTGGTATCTCAAGATGTTACCTTTCTGATTCTGAGTCTCAGCCTCCCAAGCTTCCTGAT 497
Query 463 CTTTTCCTT-TTGAAGCTAGCTTGTTCTGACCGCACAGGGCTTCTCTATGATGTCACAGA 521
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 498 CTTTTC-TTATTGAAGCTAGCTTGTTCTGACCGCACAGGGCTTCTTTATGATGTCACAGA 556
Query 522 GGTTCTTTACAAGCTTGAGATTAACATTGAGAAAGTTAAGATATCAACCACCCCTGATGG 581
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 557 GGTTCTTTACAAGCTTGAGATTAACATTGAGAAAGTTAAGATATCGACTACCCCTGATGG 616
Query 582 AAAAGTGATGGACTTGTTCTTTGTCACAGAGACTAGAGAGCTTTTAGGGACGGTGAAGAG 641
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 617 AAAAGTGATGGACTTGTTCTTTGTCACAGACACTAGAGAGCTTTTAGGGACGGTTAAGAG 676
Query 642 GCGGGATGAAGTGTATGAGTACCTGAGAGATGCCATAGGAGATTCAATGATCAGCTATGA 701
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 677 GCGGAATGAAGTGTATGAGTACCTGAGAGATGCTATAGGAGATTCAATGATCAGCTATGA 736
Query 702 CATTGAACTTGTTGGCCCAGAAATCACAGCTCGCTCGCAGGCTTCCTCATCTGTTGCAGA 761
|||||||||||||||||| |||||||||||| |||| | ||||||| || ||||||||
Sbjct 737 CATTGAACTTGTTGGCCCTGAAATCACAGCTTGCTCA-A--CTTCCTCGTCGGTTGCAGA 793
Query 762 AACATTGTTCTCCTCAGATGTGTCAGGAGAGCACCCGAGTGGGTTACAAACTTCAAGCAA 821
||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 794 AACATTGTTCTCCTCGGATGTGTCGGGAGAGCATTCGAGTGGGTTACACACTTCAAGCAA 853
Query 822 TGTGTCTATTACAGTTGACAACTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTG 881
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TGTTTCTATTGCAGTTGACAACTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTG 913
Query 882 TCAAGATCACAAAGGCCTTCTCTATGATATTATGAGAACCTTCAAGGATTTCAACATTCA 941
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 914 TCAAGATCACAAAGGTCTTCTCTATGATATTATGAGGACCTTCAAGGATTTCAACATTCA 973
Query 942 GATCTCATATGGGCGATTTACCAT-AAAGCGAGGAAGGAACTGTGAGATCGACTTGTTCA 1000
||||||||||||||| ||||| || ||| | ||||| |||||||||||||||||||||||
Sbjct 974 GATCTCATATGGGCGTTTTACAATCAAA-CTAGGAAAGAACTGTGAGATCGACTTGTTCA 1032
Query 1001 TCGTGCAATCTGATGGCCGAAAGATCCTTGACTCGAGCAAGCTAAATGCATTGATTACTC 1060
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TAGTGCAATCTGATGGCCGAAAGATCCTTGACTCGAGCAAGCTAAATGCATTGATTACTC 1092
Query 1061 GTTTAAGAGCAGAGCTACAGCAACCGCTGAGAGTGGTAATGATGAATCGAGGTCCAGATA 1120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1093 GTTTAAGAGCAGAGCTACAGCAACCTCTGAGAGTGGTAATGATGAATCGAGGTCCAGATA 1152
Query 1121 CTGAACTTCTAGTTACAAACCCTGTTGAATTATCAGGAAAGGGACGGCCACAAGTCTTCC 1180
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1153 CTGAACTTCTAGTCACAAACCCAGTTGAGTTATCAGGAAAGGGACGGCCACAAGTCTTCC 1212
Query 1181 ATGACATAGCACTTGCCCTCAAGAAGATCAATACCTGCATCTTCTCGGCTGAAATTGGAA 1240
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1213 ACGACATAGCACTTGCCCTCAAGAAGATCGATACCTGCATCTTCTCGGCTGAAATTGGAA 1272
Query 1241 GACACTTGACGGGAGACAGAGAATGGGAGGTGTACAAAGTGTTGATCAACGAAGAAGACA 1300
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GACACGTGACTGGAGACAGAGAATGGGAGGTGTACAAAGTGTTGATCAACGAAGAAGACA 1332
Query 1301 GCTTACCGATCCCGAGAAGCAAGATAGAGGAAGAAGTCTGGAATACTTTGATGGGTTGGG 1360
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1333 GCTTACCAATCCCGAGAAGCAAGATAGAGGAAGAAGTATGGAAAACTTTGATGGGCTGGG 1392
Query 1361 AGTGAAAA 1368
| ||||||
Sbjct 1393 AATGAAAA 1400
> AT5G23410.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1); signal
transducer/ two-component sensor/ ubiquitin-protein ligase
(TAIR:AT1G68050.1); Has 53 Blast hits to 53 proteins in
8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr5:7885591-7886785 REVERSE LENGTH=959
Length=959
Score = 254 bits (137), Expect = 2e-66
Identities = 152/159 (96%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 125 ACAAGATGGGAAATTTGTCGGACGACGTAGTGATAATCAGTCAATCGGAGAAAGAAGGTG 184
|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 260 ACAAGATGGG-AATTTTTCGGACAACGTAGTGATAATCAGTCAATCGGAGAAAGAAGGTG 318
Query 185 ACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACTGGTCTAGGTTGTGATCTCTGTC 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 319 ACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACGGGTCTAGGTTGTGATCTTTTTC 378
Query 245 GTATCCTCCTCTTCTTCGGCCTCAACATTGTCAGAGGAG 283
|||||||||||||||||||||||||||||||| ||||||
Sbjct 379 GTATCCTCCTCTTCTTCGGCCTCAACATTGTCTGAGGAG 417
> AT5G42730.1 | Symbols: | pseudogene similar to ACT domain-containing
protein, similar to F-box family protein | chr5:17133085-17134215
FORWARD LENGTH=1131
Length=1131
Score = 248 bits (134), Expect = 1e-64
Identities = 151/159 (95%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 125 ACAAGATGGGAAATTTGTCGGACGACGTAGTGATAATCAGTCAATCGGAGAAAGAAGGTG 184
|||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 260 ACAAGATGAG-AATTTTTCGGACAACGTAGTGATAATCAGTCAATCGGAGAAAGAAGGTG 318
Query 185 ACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACTGGTCTAGGTTGTGATCTCTGTC 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 319 ACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACGGGTCTAGGTTGTGATCTTTTTC 378
Query 245 GTATCCTCCTCTTCTTCGGCCTCAACATTGTCAGAGGAG 283
|||||||||||||||||||||||||||||||| ||||||
Sbjct 379 GTATCCTCCTCTTCTTCGGCCTCAACATTGTCTGAGGAG 417
Score = 207 bits (112), Expect = 2e-52
Identities = 136/148 (92%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 282 AGATGTATCGACTGATGGGAAATGGTGTTACTTGGTCTTCTGGGTGATTGGGAAACCTAA 341
||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||| ||
Sbjct 527 AGATGTATCAACTAATGGAAAATGGTGTTACTTGGTCTTCTAGGTGATTGGGAAACCAAA 586
Query 342 CACAAGATGGAATCTGTTGAAGATGAGACTTGTAGAGGCGAGCCCTTCTTTTTCTTGGGC 401
||| |||||||||||||||||| |||||||||| ||||| || |||||||||||| |||
Sbjct 587 CACGAGATGGAATCTGTTGAAGGTGAGACTTGTTGAGGCAAGTGCTTCTTTTTCTTAGGC 646
Query 402 CTTTGGTATCTCAAGATGTTACCTTTCT 429
||||||||||||||||||||||||||||
Sbjct 647 CTTTGGTATCTCAAGATGTTACCTTTCT 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5