BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482667
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36870.1 | Symbols: XTH32 | xyloglucan endotransglucosylase/... 1773 0.0
> AT2G36870.1 | Symbols: XTH32 | xyloglucan endotransglucosylase/hydrolase
32 | chr2:15472645-15474681 REVERSE LENGTH=1175
Length=1175
Score = 1773 bits (960), Expect = 0.0
Identities = 1051/1095 (96%), Gaps = 5/1095 (0%)
Strand=Plus/Plus
Query 1 TCCACTCTTCTTCTTTCCACTCCACACAAAAGAAGAAGAAAGA-A-AAATGGGCAACTCT 58
||||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||
Sbjct 5 TCCACTCTTCTTCTTTCCACTCCACACAAAAGAAGAA-AAAGAGAGAAATGGGTAACTCT 63
Query 59 TTGATCTCTCTTTTCTCAATCTTCCACTTGTTGGTGTTATGGGGATCCTCAGTGAATGCT 118
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 64 TTGATCTCTCTTCTCTCAATCTTCCACTTGCTGGTGTTATGGGGATCCTCAGTGAATGCC 123
Query 119 TATTGGCCACCATCACCTGGTTATTGGCCAAGCTCCAAGGTTAGCTCCCTCAACTTTTAC 178
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 124 TATTGGCCACCATCACCTGGTTATTGGCCAAGCTCCAAGGTTGGTTCCCTCAACTTCTAC 183
Query 179 AAAGGTTTTAGGAATCTTTGGGGTCCTCAGCATCAGAGAATGGACCAAAATGCCCTCACC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AAAGGTTTTAGGAATCTTTGGGGTCCTCAGCATCAGAGAATGGACCAAAATGCCCTCACC 243
Query 239 ATCTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTGAAGCCATTCAGATCAGGC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATCTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTGAAGCCATTCAGATCAGGC 303
Query 299 TACTTTGGAGCAAACATCAAACTCCAACCTGGCTACACTGCTGGAGTCATCACATCTCTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TACTTTGGAGCAAACATCAAACTCCAACCTGGCTACACTGCTGGAGTCATCACATCTCTC 363
Query 359 TATCTATCAAATAATGAGGCACATCCAGGGTTCCATGATGAAGTGGACATAGAATTTCTG 418
||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 364 TATCTATCAAATAATGAGGCACATCCAGGGTTCCATGATGAGGTAGACATAGAATTTTTG 423
Query 419 GGGACAACATTTGGGAAGCCTTACACACTTCAGACAAATGTGTACATTAGAGGAAGTGGT 478
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 424 GGGACAACATTTGGGAAGCCTTACACACTTCAGACAAATGTGTATATTAGAGGAAGTGGT 483
Query 479 GATGGCAAAATCATTGGTCGTGAGATGAAGTTTCGTTTGTGGTTTGATCCAACTAAAGAT 538
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 484 GATGGGAAAATCATTGGCCGTGAGATGAAGTTTCGCTTGTGGTTTGATCCAACTAAAGAT 543
Query 539 TTCCACCATTATGCTATTCTTTGGAGCCCTAGAGAAATCATATTTTTGGTGGATGATATT 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTTCACCATTATGCTATTCTTTGGAGCCCTAGAGAAATCATATTTTTGGTGGATGATATT 603
Query 599 CCCATAAGAAGATACCCAAAGAAGAGTGCGGCTACATTTCCTTTAAGACCAATGTGGCTT 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 604 CCCATAAGAAGATACCCAAAGAAGAGTGCGTCTACATTTCCTTTAAGACCAATGTGGCTT 663
Query 659 TATGGTTCCATATGGGATGCTTCTTCTTGGGCAACCGAAGATGGTAAATACAAAGCCGAC 718
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 664 TATGGTTCCATATGGGATGCTTCTTCTTGGGCAACGGAAGACGGTAAATACAAAGCCGAC 723
Query 719 TATAAATATCAACCTTTTACTGCAAAATACACCAATTTTAAAGCCCTCGGCTGCACCGCC 778
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 724 TATAAATATCAACCTTTCACTGCTAAATACACCAATTTTAAAGCGCTCGGCTGCACCGCC 783
Query 779 TACTCGTCGGCTCGGTGCTATCCATTGTCGGCTTCGCCATACCGTTCTGGCGGATTAACC 838
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 784 TACTCGTCAGCTCGGTGCTATCCGTTGTCGGCTTCGCCATACCGTTCTGGCGGATTAACC 843
Query 839 CGGCAACAACAGCAAGCCATGAGATGGGTTCAAACACATAGTATGGTATACAATTATTGC 898
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CGACAACAACACCAAGCCATGAGATGGGTTCAAACACATAGTATGGTATACAATTATTGC 903
Query 899 AAAGATTATAAGCGAGACCATTCTCTAACGCCGGAATGTTGGCGTTAGGAAACATTTGAG 958
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 904 AAAGATTATAAGCGAGACCATTCTTTAACGCCGGAATGTTGGCGTTAGGAAATATTCGAT 963
Query 959 GAAAGTCCCAAAGTTTGAGAATTTTAATTACATCAAAGACAATACCACAAAGAGCTTGGT 1018
|||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||
Sbjct 964 GAAAGTCCCAAAGTTTGAGAGTTTTAATCACATCAAAGTTAATACCAGAAAGAGCTTGGT 1023
Query 1019 AAAATTTTGGGATTTTTTGTTCATTACTATTATTACGTGGTTGTTTGTTTCACGGAAATA 1078
| |||||||||||||||| | |||||||||||||| ||||||| |||||||||| |||||
Sbjct 1024 ACAATTTTGGGATTTTTT-T-CATTACTATTATTATGTGGTTGGTTGTTTCACGAAAATA 1081
Query 1079 AATTTTCCttttttt 1093
||||||| |||||||
Sbjct 1082 AATTTTCTTTTTTTT 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5