BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482670
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36885.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1286 0.0
> AT2G36885.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 172 Blast hits to 172 proteins in 58 species: Archae - 0;
Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses
- 0; Other Eukaryotes - 24 (source: NCBI BLink). | chr2:15482003-15483711
REVERSE LENGTH=970
Length=970
Score = 1286 bits (696), Expect = 0.0
Identities = 833/898 (93%), Gaps = 14/898 (2%)
Strand=Plus/Plus
Query 1 CTCTCTTCTCCAATGGCGGCAATCACCGGATTCTCCGCTCTTTCAAGCCCTATCTCTCCT 60
|||| | |||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 24 CTCTATCCTCCAATGGCGGCAATCACCGGATTCTCCGCTCTCTCAAACCATATCTCTCCT 83
Query 61 CCTTCATCACTTCCGGT-ATCGCGTTTACCCAATTCCACTCAGTGTCTCTCCAGATTCTC 119
||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||
Sbjct 84 GCTTCATCACTTCC-GTCGTCGCGTTTACTCAATTCCACTCAGTGTCTGTCCAGATTCTC 142
Query 120 AAATGTATCTTCGTTTCCCGCGCTCTCTA-CTTCTCGCCGGAGAAAGATCCCGTTGACTC 178
|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 143 AAATGTGTCTTCGTTTCCCGCGCTCTCTACCTT-TCGCCGGAGAAAGATCCCGTTGACTC 201
Query 179 CGGCGTGTTCTTCGATACG-CAACGGAGACGAATCTGTTGAAGCAATAAGTGATGATGAG 237
||||||||||||||||| | | ||||||| ||| ||||||||| | |||||||||||
Sbjct 202 CGGCGTGTTCTTCGATA-GTCGACGGAGATGAAGAAATTGAAGCAAGAGGTGATGATGAG 260
Query 238 AATGAGATTAAAGAGACATTGATGTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCT 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AATGAGATTAGAGAGACATTGATGTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCT 320
Query 298 TCTCTCCCTGGAGCTAATAACGAAACTGTAACATCTGTTTTTGGACCTGTTGTTGAGATT 357
|||||||||||||| ||||||||||| |||||| |||||||| ||||| ||||||
Sbjct 321 TCTCTCCCTGGAGC------CGAAACTGTAAGATCTGTGTTTGGACCCGTTGTGGAGATT 374
Query 358 GTAAAATCCTTGAATCTACCTGATTGGCTTGTTCATTGGGGACATCCAGGGAACATGGCA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GTAAAATCCTTGAATCTACCTGATTGGCTTGTTCATTGGGGACATCCAGGGAACATGGCA 434
Query 418 GTTGTACTTTTTGCTATGGGTGGCTATGGAACATACTTAGGCTTCCGGATTCGTTATTCT 477
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 435 GTGGTACTTTTTGCTATGGGTGGCTATGGAACATACCTAGGCTTCCGGATTCGTTATTCT 494
Query 478 GATGATATTGAGGAGAAGGCAAAGGCAAAAGACCTACACCCGAAGCTTCTAGCCGGAATG 537
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 495 GATGACATTGAGGAGAAGGCAAAGGCAAAAGACCTGCACCCAAAGCTTCTAGCCGGAATG 554
Query 538 TTTTTCTTTTTCGCTCTTGGAGCAACTGGTGGTGTCATATCCCTTCTTACTTCTGACAAA 597
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 555 TTTTTCTTTTTCGCCCTTGGAGCAACTGGTGGTGTTATATCCCTTCTTACTTCCGACAAA 614
Query 598 CCCATCTTCGAAAGTCCGCACGCTGTTACAGGACTCATAGGTCTTGGCCTATTGACGATT 657
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 615 CCCATCTTCGAAAGTCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTT 674
Query 658 CAAACAATCTTACCATCTTTGTTCAAGGAGAAACCTGAACTGAGGAATGTGCACGGGATC 717
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 675 CAAACAATCTTACCATCTTTGTTCAAGGAGAAACCCGAACTGAGGAACGTGCACGGGATC 734
Query 718 CTCGGGAGTGGAATTATGGCGCTATTCCTCGTCCATGCTGCTTTCGGTCTTCAGCTCGGT 777
|| ||||| || || |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 735 CTTGGGAGCGGGATAATGGCGCTTTTCCTCGTCCATGCTGCTTTCGGCCTTCAGCTCGGT 794
Query 778 CTCAGTTACTGACTATTCTTCACTGATCGCTTCTCTTATGTTTGTATTATTTCAGCTGCA 837
||||||| || | ||||||| ||||||| ||||||||||||||||||| || ||||||||
Sbjct 795 CTCAGTTTCTAATTATTCTTTACTGATCTCTTCTCTTATGTTTGTATTCTT-CAGCTGCA 853
Query 838 ACAACAAACttttttttCTTTAAAGTCTTAAAATTT-AATAAAAGAAGATATATAGAG 894
|| |||| | ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 854 ACCACAACCATTTTTTTCTTTAAAGCCTTAAAATTTCAATAAAAGAAGATATATAGAG 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5