BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482672
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36890.1 | Symbols: RAX2, MYB38, ATMYB38, BIT1 | Duplicated ... 1389 0.0
AT5G65790.1 | Symbols: ATMYB68, MYB68 | myb domain protein 68 |... 259 3e-68
> AT2G36890.1 | Symbols: RAX2, MYB38, ATMYB38, BIT1 | Duplicated
homeodomain-like superfamily protein | chr2:15485779-15487277
FORWARD LENGTH=971
Length=971
Score = 1389 bits (752), Expect = 0.0
Identities = 909/978 (93%), Gaps = 37/978 (4%)
Strand=Plus/Plus
Query 1 ATCTCAACCAAAACACATAGACCAAGAGAGACAGTTAGAGAGATGGGTAGGGCTCCATGT 60
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATCTCAACCAAAACACTTAGACCAAGAGAGACAGATAGAGAGATGGGTAGGGCTCCATGT 60
Query 61 TGTGACAAGGAAAATGTGAAGAGAGGTCCATGGTCTCCTGAAGAAGATGCAAAGCTTAAA 120
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TGTGACAAGGCAAATGTGAAGAGAGGTCCATGGTCTCCTGAAGAAGACGCAAAGCTTAAA 120
Query 121 GATTACATCGAGAAACAAGGCACTGGTGGCAATTGGATTGCTCTCCCTCACAAAGCTGGT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTACATCGAGAAACAAGGAACTGGTGGCAATTGGATTGCTCTCCCTCACAAAGCTGGT 180
Query 181 TTAAGGAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAAATTATTTGAGACCTAACATA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TTAAGGAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAAATTATTTGAGACCAAACATA 240
Query 241 AGACATGGAGATTTCACTGAGGAAGAAGACAAGATTATCTACAGCCTCTATGCCTCCATT 300
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 241 AGACATGGAGATTTCACTGAAGAAGAAGACAATATTATCTACAGCCTCTTTGCCTCCATT 300
Query 301 GGAAGCAGGTGGTCAGTAATAGCAGCTCACTTGCAAGGTAGAACTGATAATGACATCAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAGCAGGTGGTCAGTAATAGCAGCTCACTTGCAAGGTAGAACTGATAATGACATCAAG 360
Query 361 AACTATTGGAACACTAAGCTCAAGAAGAAGCTCATTGCCTCCATGGCTCCTCCTTCACAT 420
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 361 AACTATTGGAACACTAAGCTCAAGAAGAAGCTCATAGCCACCATGGCTCCTCCTCCACAT 420
Query 421 CACCACTTAGCCACTGCTACATCATCATCA-C--CATC---A-C--CATCA-CA--TTAC 468
||||||||||||| |||||||||||||||| | |||| | | ||||| || ||||
Sbjct 421 CACCACTTAGCCATTGCTACATCATCATCATCAGCATCCCCATCATCATCATCACATTAC 480
Query 469 AACATGATCAATAGTCTTCTTCCGTATAACCCATCAGTATCAACAAACCAACTTCTCACA 528
|||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||
Sbjct 481 AACATGATCAATAGTCTTCTTCCGTATAACCCATCA--A-CAA-A--CCAACTTCTCACA 534
Query 529 CCTCA---GGGTATGATGATGACAATGATGGGCCAACAACAACAACAACTATTATATCAA 585
||||| |||||| ||||||||||||||||||||||||||||||| | | || ||||||
Sbjct 535 CCTCATCAGGGTATCATGATGACAATGATGGGCCAACAACAACAACTA-T-TT-TATCAA 591
Query 586 GAAGACATGGGCAGTTTGGTAAATTC-CGCAAACAGCAACAAGT-TCATAATGAGCCATC 643
||||||||||||| |||||||||||| | ||||||| ||||| | |||||||||||||||
Sbjct 592 GAAGACATGGGCAATTTGGTAAATTCTC-CAAACAGAAACAA-TCTCATAATGAGCCATC 649
Query 644 AAGAACACAGCCAGGAGCAAAGTACAAACAATGGAATAATGTTGTTGAGTGATGTAAGAA 703
||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 650 AAGAAGACAACCAAGAGCAAAGTACAAACAAGGGAATAATGTTGTTGAGTGATGTAAGAA 709
Query 704 GTGGGTCGAGTACAACAAGTACAGTAACAAGAGTGAAGATGGAACATC-T---C--Gat- 756
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 710 GTGGGTCGAGTACAACAAGTACAGTAACAAGAGTGAAGATGGAACATCGTGATCATGATG 769
Query 757 --catcatcatcatcatGAAGAGGATGAGAGATCAATGAGCTCGGTAGTTATGGAAGATT 814
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 770 ATCATCATCATCATCATGAAGAAGATGAGAGATCAATGACCTCGGTAGTGATGGAAGATT 829
Query 815 ATGGAATGGAGGAGATCAAGCAATTAATAAGTAGTAGTTGTACGAGTGGTAACAATAGCT 874
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 830 ATGGAATGGAGGAGATCAAGCAATTAATAAGTAGTAGTTGTACGAGTAGTAACAATAGCT 889
Query 875 TGTGGTTTGACGAAAACAAGACAGAGGATAAGTTCATGTTGTACTATTGATCCCTCTTAC 934
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 890 TGTGGTTTGACGAAAACAAGACGGAGGATAAGTTCATGTTGTACTACTGATCTCGAGTAC 949
Query 935 CAACTTTGATTAAATCTC 952
||||||||||| ||||||
Sbjct 950 CAACTTTGATTTAATCTC 967
> AT5G65790.1 | Symbols: ATMYB68, MYB68 | myb domain protein 68
| chr5:26322948-26324578 FORWARD LENGTH=1405
Length=1405
Score = 259 bits (140), Expect = 3e-68
Identities = 285/355 (80%), Gaps = 10/355 (3%)
Strand=Plus/Plus
Query 43 ATGGGTAGGGCTCCATGTTGTGACAAGGAAAATGTGAAGAGAGGTCCATGGTCTCCTGAA 102
||||| || || || |||||||| |||| || ||||||| ||| || |||||||||||
Sbjct 88 ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 147
Query 103 GAAGATG-CAAAGCTTAAAGATTACATCGAGAAACA-AGGCACTGGTGGCAATTGGATTG 160
||||| | |||| || ||||||||||||||| || | ||||| || ||||| |||||||
Sbjct 148 GAAGACGCCAAA-CTCAAAGATTACATCGAG-AATAGTGGCACAGGAGGCAACTGGATTG 205
Query 161 CTCTCCCTCACAAAGCTGGTTTAAGGAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAA 220
|| | ||||| ||| |||||||||||||||||||||||||||||| || || ||| | |
Sbjct 206 CTTTGCCTCAGAAAATTGGTTTAAGGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGCTCA 265
Query 221 ATTATTTGAGACCTAACAT-AAGACATGGAGATTTCACTGAGGAAGAAGACAAGATTATC 279
| ||||||||||| ||||| || |||||| | ||| | |||||||||||||| || ||
Sbjct 266 ACTATTTGAGACCAAACATCAA-ACATGGTGGCTTCTCCGAGGAAGAAGACAACATCATT 324
Query 280 TACAGCCTCTATGCCTCC-ATTGGAAGCAGGTGGTC-AGTAATAGCAGCTCACTTGCAAG 337
| | |||||||| | | ||||| ||||||||||| | |||| || || || |||| |
Sbjct 325 TGTAACCTCTATGT-TACTATTGGTAGCAGGTGGTCTA-TAATTGCTGCACAATTGCCGG 382
Query 338 GTAGAACTGATAATGACATCAAGAACTATTGGAACACTAAGCTCAAGAAGAAGCT 392
| ||||| || || || ||||| |||||||||||||| | ||| |||||||||||
Sbjct 383 GAAGAACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCT 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5