BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482673
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36900.1 | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:154... 1266 0.0
AT5G50440.1 | Symbols: MEMB12, ATMEMB12 | membrin 12 | chr5:205... 708 0.0
> AT2G36900.1 | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:15491435-15492822
REVERSE LENGTH=1006
Length=1006
Score = 1266 bits (685), Expect = 0.0
Identities = 789/838 (94%), Gaps = 11/838 (1%)
Strand=Plus/Plus
Query 1 CCGATCAAATCTCGATC--TTCTCGTCGCAGCATCTCCGATTGCGATTGCTCCGGCGG-T 57
||||| ||||||||||| ||||||||| | ||||||||||||||||| ||| |||| |
Sbjct 1 CCGATTAAATCTCGATCTTTTCTCGTCGTAACATCTCCGATTGCGATTTATCCTGCGGCT 60
Query 58 AATTTCTAGGACGGCGTCACAAGCCTCTCGTCTTCTTTCTCTTGCTCAGAGACGCTTCGG 117
|| ||| ||||||||| |||||| ||||||||| || |||||||||||||||||||||||
Sbjct 61 AA-TTCCAGGACGGCGCCACAAGTCTCTCGTCTGCTCTCTCTTGCTCAGAGACGCTTCGG 119
Query 118 TAACGAGAAGTCCTGATCT----GAT---ATGGCGTCTGGGATCGTCGGAGGAGGTGGAT 170
||||||||||||||||||| ||| ||||||||||| ||||||| |||||| ||||
Sbjct 120 TAACGAGAAGTCCTGATCTGAGAGATACAATGGCGTCTGGTATCGTCGAAGGAGGCGGAT 179
Query 171 CCTTATCGGATGTATATAGTAGTGCGAAAAGGATTCTACTCAAGGCTCGCGACGGAATCG 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCTTATCGGATGTATATAGTAGTGCGAAAAGGATTCTACTCAAGGCTCGCGACGGAATCG 239
Query 231 AGAGGTTAGAGAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAGGTTAGAGAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGA 299
Query 291 AACGAGACATTACTGAGGTCCGAGCTCTCTGCTCAAACATGGATTCTCTTTGGCGCTCAA 350
||||||| ||||||||||||||| |||||||||| ||||||||| |||| ||||||||||
Sbjct 300 AACGAGATATTACTGAGGTCCGATCTCTCTGCTCTAACATGGATACTCTCTGGCGCTCAA 359
Query 351 TTCCTGTTAAATCCCAGCGTGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAG 410
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCCTGTTAAATCTCAGCGCGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAG 419
Query 411 CTGAGTATTTGAATCAAAGTCTGGAAAAATACATGTCGAGGAATCAGAAAAAGATGTTGG 470
||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 420 CTGAGTATTTGAATCTAAGTCTGGAGAAATACATGTCGAGGAATCAGAGGAAGATGTTGG 479
Query 471 AAGCTAAAGAGAGAGCGGATTTGCTAGGAAGAGCGAGCGGAGAAGGGGCTCACATTTTGC 530
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 480 AAGCTAAAGAGAGAGCGGATTTGCTAGGTAGAGCGAGTGGAGAAGGAGCTCACATTTTGC 539
Query 531 AGATATTTGATGAGGAAGCTCAAGCTATGAACTCTGTGAAGAACTCAAAAAGAATGCTTG 590
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 540 AGATATTTGATGAGGAAGCTCAAGCTATGAGCTCTGTGAAGAACTCAAAGAGAATGCTTG 599
Query 591 AAGAGTCGTTTTCAAGTGGAGTTGCTATCCTCTCCAAATATGCTGAACAAAAGGATCGTT 650
||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 AAGAGTCGTTTTCTAGTGGTGTTGCTATCCTCTCCAAATATGCTGAACAAAGGGATCGTT 659
Query 651 TGAAGAATGCACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAACTCGG 710
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 TGAAGAGTGCACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAATTCGG 719
Query 711 TACTGAGGCTCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TACTGAGGCTCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGA 779
Query 771 TCGCAACACTTGTCATATTGTATCTGTTCATAAGATGGACACGCTAAACAGAAGAAAA 828
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 780 TCGCAACACTTGTCATATTATATCTGTTCATAAGATGGACACGCTAAGCCGAAGAAAA 837
> AT5G50440.1 | Symbols: MEMB12, ATMEMB12 | membrin 12 | chr5:20537525-20538943
REVERSE LENGTH=945
Length=945
Score = 708 bits (383), Expect = 0.0
Identities = 564/650 (87%), Gaps = 18/650 (3%)
Strand=Plus/Plus
Query 182 GTATATAGTAGTGCGAAAAGGATTCTACTCAAG-GCTCGCG-ACGGAATCGAGAGGTTAG 239
|||||||||||||| |||||||||||||| ||| ||||| | | |||||||||| ||| |
Sbjct 200 GTATATAGTAGTGCAAAAAGGATTCTACT-AAGAGCTCG-GAATGGAATCGAGAAGTTGG 257
Query 240 AGAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGAAACGAGACA 299
||||||||| | | || | ||| || |||| || ||||||||||||||||||||||
Sbjct 258 AGAGGTTCG----A-C-TC--T-GATCCTACCGACCTCGCCTCCTCCGTGAAACGAGACA 308
Query 300 TTACTGAGGTCCGAGCTCTCTGCTCAAACATGGATTCTCTTTGGCGCTCAATTCCTGTTA 359
|||| ||||| | | |||| || || || ||||| ||| ||||| || || ||||| |
Sbjct 309 TTACCGAGGTTCAATCTCTTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTCA 368
Query 360 AATCCCAGCGTGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAGCTGAGTATT 419
|||||||||||||||| |||||||| |||| ||||||||| |||||||| ||||||||||
Sbjct 369 AATCCCAGCGTGATCTTTGGAGAAGGAAGAGTGAACAAGTAGGAGAAGAGGCTGAGTATT 428
Query 420 TGAATCAAAGTCTGGAAAAATACATGTCGAGGAATCAGAAAAAGATGTTGGAAGCTAAAG 479
|||| |||||||| || || ||||||| ||||||||||| |||||||||||||||||||
Sbjct 429 TGAACCAAAGTCTAGAGAAGTACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCTAAAG 488
Query 480 AGAGAGCGGATTTGCTAGGAAGAGCGAGCGGAGAAGGGGCTCACATTTTGCAGATATTTG 539
|||||||||||||| |||| |||| ||| |||||||| |||||||||||||| |||||||
Sbjct 489 AGAGAGCGGATTTGTTAGGTAGAGGGAGTGGAGAAGGAGCTCACATTTTGCAAATATTTG 548
Query 540 ATGAGGAAGCTCAAGCTATGAACTCTGTGAAGAACTCAAAAAGAATGCTTGAAGAGTCGT 599
||||||| ||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 549 ATGAGGAGGCTCAAGGAATGAACTCTGTTAAGAATTCAAAGAGAATGCTTGAAGATTCGT 608
Query 600 TTTCAA-GTGGAGTTGCTATCCTCTCCAAATATGCTGAACAAAAGGATCGTTTGAAGAAT 658
|| ||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||| |
Sbjct 609 TT-CAAAGTGGAGTTGCTATTCTCTCTAAATATGCTGAACAAAGGGATCGTTTGAAGAGT 667
Query 659 GCACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAACTCGGTACTGAGG 718
|| ||| | || |||||||||||||||||||| || |||||||| ||||| ||| |||||
Sbjct 668 GCGCAGAGGAAGGCTTTGGATGTTCTGAACACTGTTGGGCTCTCTAACTCTGTATTGAGG 727
Query 719 CTCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGATCGCAACA 778
|||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 728 CTCATTGAGAGGCGTAATCGTGTTGATACCTGGATTAAATATGCGGGTATGATCGCAACG 787
Query 779 CTTGTCATATTGTATCTGTTCATAAGATGGACACGCTA-AAC-AGAAGAA 826
||||||||||||||||| |||||||||||||||||||| ||| ||| |||
Sbjct 788 CTTGTCATATTGTATCTCTTCATAAGATGGACACGCTAGAACCAGA-GAA 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5