BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482675
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 370 1e-101
> AT2G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G02870.1); Has 13 Blast
hits to 11 proteins in 2 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:15508798-15509850
FORWARD LENGTH=1053
Length=1053
Score = 370 bits (200), Expect = 1e-101
Identities = 259/287 (90%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 614 TTCAGGTGAAGAACATGACACAAACAATTCTGACACTTTGGGAGACTCAAGTAACATTTC 673
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 391 TTCAGGTGAAGAACATGGCACAAACAATTCTGACACTTTGGGAGACCCAAGTAACATTTC 450
Query 674 TCTTGGTTGTTTTGGGAGCATTGAATCCATATTGAAGGCAACAAGAGATGGAAAAGAGGT 733
|||| ||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
Sbjct 451 TCTTCGTTGTTTTGGGAGCATTGAATCCATATTGAAGGTAGCAAGAGATGGAATAGAGAT 510
Query 734 TCCGACGATGCCTACCCCTAGACCTGTCAACAACGCACCTCAATGGACCATCAAGAAGAG 793
| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 511 TACGATGATGCCTATCCCTAGACTTGTCAACAACGCACCTCAATGGACCATCAAGAAGAG 570
Query 794 ATTGACCAAGAA-AGATGTTAACCCT--T-ATGGCCAACTTAGTCTGCCCAGTAGCTCCT 849
| ||||| || | | ||||||||||| | ||||||||||| |||||||||| |||| ||
Sbjct 571 ACTGACCGAGCATA-ATGTTAACCCTACTTATGGCCAACTTCGTCTGCCCAGAAGCTTCT 629
Query 850 TCGATCAGCATATTCGAAGACATCTGCCTGAAGAAGATTTGCCAAAG 896
|||| ||||| |||||| ||||||||||||||| ||||||| ||||
Sbjct 630 TCGAACAGCAGATTCGAGGACATCTGCCTGAAGCTGATTTGCAAAAG 676
Score = 359 bits (194), Expect = 3e-98
Identities = 275/312 (88%), Gaps = 14/312 (4%)
Strand=Plus/Plus
Query 1 AAACGAAAATGTCATTCTCAGACGATCCTACATCTCCGA-CGGAGAAGAATCGAGCTCGT 59
|||||| ||||||||||||||||||| ||||||||| | |||| |||||||||||||||
Sbjct 33 AAACGAGAATGTCATTCTCAGACGATTGTACATCTCC-ATCGGAAAAGAATCGAGCTCGT 91
Query 60 ACGAGTCAAGAACCACGAGAGCGCCCTCAAGATTTGTCTTGCTTGTCATCCAAGGAAACA 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 92 ACGAGTCAAGAACCACGAGAGCGCCCTCAAGATTTGTCTTTCTTGTCATCCAAGGTAACA 151
Query 120 GAGAAG-A------G--CCAAGAACCGAATGAAACGTCTGGCTCCTCTGTTTCTCCGATG 170
|||||| | | |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 152 GAGAAGCAAATTATGAGCCAAGAACCGTTTGAAACGTCTTGCTCCTCTGTTTCTCCGATG 211
Query 171 AACAGATACAAAGAAGCCTTAAAAAATCGACATGGCCCGGTCTCGAAAAACCAAAATTAC 230
|||||| ||||||||||||| || | ||||||||| || |||||||||||||||| |||
Sbjct 212 AACAGAGACAAAGAAGCCTTTAACAGTCGACATGGTCCATTCTCGAAAAACCAAAACTAC 271
Query 231 GACTTCGAAAGTAATAACATCACCATCAACACTGAAAACCTGCTAAATCCTTTCGGTGTC 290
|||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 272 ---TTCGAAAGTAATGACATCACCATGAACACTGAAAACCTGCTAAATCCTTTCCATTTC 328
Query 291 GGAGGAGGGTCT 302
|||||||| |||
Sbjct 329 GGAGGAGGTTCT 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5