BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482676
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36950.1 | Symbols: | Heavy metal transport/detoxification ... 1871 0.0
> AT2G36950.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr2:15515133-15516931 FORWARD LENGTH=1421
Length=1421
Score = 1871 bits (1013), Expect = 0.0
Identities = 1316/1454 (91%), Gaps = 54/1454 (4%)
Strand=Plus/Plus
Query 1 TTACTCTCGTTCAAACATTTCTTCATCCT-TTAAATACaaaaaataaaaaataaaaaCC- 58
||||||||||||||||| |||||| |||| ||||||||||||||| |||||| ||
Sbjct 1 TTACTCTCGTTCAAACAATTCTTCGTCCTATTAAATACAAAAAAT-AAAAAT-----CCT 54
Query 59 TAGAAAATA-A-CCTTATCTTCAACCAAGAATGGGAGAGGTCCAAGAAGGTGCCAAAGTT 116
|| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 55 TA-AAAATATATCCTTATCTTCAACCAAGAATGGGAGAGGTCCAAGAAGGTCCCAAAGTT 113
Query 117 GAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTCGAGACTACGGACGGCAAGCCA 176
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 114 GAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTTGAGACTACTGACGGCAAGCCA 173
Query 177 AAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAG--CC-CC-G--GCCGC------CGCT 224
|||||||||||||||||||||||||||||||||| || || | ||||| | ||
Sbjct 174 AAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAGCACCACCGGTCGCCGCGGTTGTCTCT 233
Query 225 GCCTTTGTTTACAAAGTTGATCTGCACTGCGAAGGCTGCGCTAAGAAGATTAAGCGAATG 284
||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 234 GCCTTTGTTTACAAAGTGGATATGCACTGTGAAGGCTGCGCTAAGAAGATAAAGCGAATG 293
Query 285 GTGAAGCACTTTGATGGAGTGAAAGATGTGACGGCGGATACAGGTGGTAATAAGCTTATG 344
|| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||
Sbjct 294 GTTAAGCACTTTGATGGAGTGAAAGATGTGACGGCAGATACTGGTGGAAATAAGCTTTTG 353
Query 345 GTGGTCGGAAAGATTGATCCGGTGCAACTCCAGGAGAAGTTAGAGGAGAAAACTAAGAGA 404
|||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||
Sbjct 354 GTGGTCGGAAAGATTGATCCAGTGAAACTCCAGGAGAAGTTGGAGGAGAAAACCAAGAGA 413
Query 405 AAGGTGGTACTCACCAATCCACCGCCACCTTCACCGCCAAAGGTAGAGGGACCTGTTGCT 464
|||||||| | | | ||| | | |||||||||||||||||||||||||||||
Sbjct 414 AAGGTGGT--T---C--T----CGCGA-ATCCACCGCCAAAGGTAGAGGGACCTGTTGCT 461
Query 465 GCCGCCGTTGGAGAGAAGAAAGCCGATGGAGGAGATAAGGCGGCGGTTCCTCCTCCTGCT 524
||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| || ||
Sbjct 462 GCCGCCGTTGGAGAGAAGAAAGCCGATGGTGGAGATAAGGAGGCGGCTCCTCCTGCTCCT 521
Query 525 GCTCCGGCAGCTCCAAAAGAGAGC-TCCGTGCCTTTAAAGATCAGACTACATTGTGAAGG 583
|||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 522 GCTCCGGCAGCTCCAAAAGAGAGCGT-GGTGCCTTTAAAGATCAGACTACATTGCGAAGG 580
Query 584 ATGTATTCAGAAAATCAAGAAAATAATATTAAAAATCAAAGGGGTCGAAACCGTGGCTAT 643
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 581 ATGTATTCAGAAAATCAAGAAAATAATATTGAAAATCAAAGGAGTCGAAACAGTGGCTAT 640
Query 644 TGACGGAGCTAAAGACGTGGTGACGGTGAAAGGAACGATAGACGTTAAAGAACTTGTGCC 703
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 641 TGACGGAGCTAAAGACGTGGTGACGGTTAAAGGAACGATAGACGTTAAAGAACTTGTGCC 700
Query 704 TCTCCTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGA 763
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TCTACTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGA 760
Query 764 CGGAGCCGCCGAGAAGAAGAAGACGGAAGCCACCGCTCCTGACGCAAAGAAAGAGGCTCC 823
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 761 CGGAGCCGCCGAGAATAAGAAGACGGAAGCTGCCGCTCCTGACGCAAAGAAAGAGGCTCC 820
Query 824 GACCGCCGGAGTTAACGAAGCaaagaaggaaggaaatgacggtggagagaagaagaaaga 883
| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 821 GTCCGCCGGAGTTAACGAAGCAAAGAAGGAAGGAAGTGACGGTGGAGAGAAGAAAAAAGA 880
Query 884 ggccggagacggcggagagaaaaagaaagaagctggtgacggcggaga-aaagaagaaag 942
|| ||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||
Sbjct 881 GGTTGGAGACGGCGGAGAGAAGAAGAAAGAAGGTGGTGACGGCGGAGAGAAA-AAGAAAG 939
Query 943 aagctggagacggaggagagaagaaggaaggtggcggaggaggaggTGTGCCGGCGCCGG 1002
|||| ||||||||||||||||||||| ||| ||||||||| ||||||||| ||||
Sbjct 940 AAGCCGGAGACGGAGGAGAGAAGAAGAAAGATGGCGGAGG------TGTGCCGGCCCCGG 993
Query 1003 TGGCGATGGTGAATAAGATGGATTATTATGGGTACTCATCTTATCCAACGGCTCCGATGT 1062
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 994 TGGCGATGGTGAATAAGATGGATTATTATGGGTACTCAGCTTATCCAACGGCTCCTATGC 1053
Query 1063 ATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGGGAGGTCAGAGTTATCCCG 1122
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
Sbjct 1054 ATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGACAGGTCAGAATTATCCAG 1113
Query 1123 TGGCAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCGACTGAGAGTTACGTGCCCT 1182
||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 1114 TGGGAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCAAGTGAGAGTTACGTGCCGT 1173
Query 1183 ACTCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAACCCCAATGGCTGTT 1242
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1174 ACGCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAATCCCAATGGTTGCT 1233
Query 1243 CCGTTATGTAATAATGGGGTTAAATTGAAAATATAAGAAACTCTAAGGGTTTATG-CATA 1301
| |||||||||||||||||||||| || |||||||||||||| |||||||||| ||||
Sbjct 1234 CTGTTATGTAATAATGGGGTTAAACTGTAAATATAAGAAACTATAAGGGTTTAAAACATA 1293
Query 1302 AATGTGGAAACACAAAACTTAGGT-AAATTTTTGAAAGTCGAGTTTGAGCCAGCGAATTC 1360
| ||||| ||||||||||||| || ||| ||||||||||| | |||||||||||||||||
Sbjct 1294 ATTGTGGGAACACAAAACTTATGTTAAAATTTTGAAAGTCTACTTTGAGCCAGCGAATTC 1353
Query 1361 TGACGTGTAACGTTGTTCCTTTGTTAGTTAGTTAGTTCTTTGGGGAATG-TTGAATAATT 1419
||||||||||| ||||||||| ||||||||| || ||| ||| ||||||||||
Sbjct 1354 TGACGTGTAACATTGTTCCTTAAATAGTTAGTT--TT-TTTC---AATTATTGAATAATT 1407
Query 1420 ACTTACTTTACTTT 1433
| || ||||||||
Sbjct 1408 AATTGTTTTACTTT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70632166815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5