BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482680
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2817 0.0
> AT2G36980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15531161-15533265 FORWARD LENGTH=2105
Length=2105
Score = 2817 bits (1525), Expect = 0.0
Identities = 1763/1880 (94%), Gaps = 7/1880 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGTTCTGGTTCGTCTTACTTCAAAGATTGCGTCTTTGGCCAAATCAGGTCGCATA 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTCTGTTTTGGTTCGTCTTACTTCAAAGATTGCGTCTTTGGCAAAATCAGGTCGCATA 60
Query 61 ACAAGCGCCCGTCAAATGTTCGACGAAATGACTGACCGAGATACCGTGGCGTGGAACACT 120
|||| |||||||| ||||||||| |||| |||| | |||||| ||||||||||||||
Sbjct 61 GCAAGTGCCCGTCAGGTGTTCGACGGAATGCCTGAGCTAGATACTGTGGCGTGGAACACC 120
Query 121 ATGTTGACGAGTTATTCTCGTCTGGGTTTACATCAGGAAGCTATAGCTCTGTTCACCCAG 180
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGTTGACGAGCTATTCTCGTTTGGGTTTACATCAGGAAGCTATAGCTCTGTTCACCCAG 180
Query 181 TTGAGATTCTCCGACTCTAAGCCTGATGATTATTCGCTTACAGCAATCTTGAGCACTTGT 240
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TTGAGATTCTCCGACGCTAAGCCTGATGATTATTCGTTTACAGCAATCTTGAGCACTTGT 240
Query 241 GCGAGTCTAGGCAATGTTAGATTGGGAAGAAAGATTCAGTCTTTTGTTATCCGGTCTGGG 300
||||||||||| ||||||| ||| |||||||||||||||||||| ||||| |||||||||
Sbjct 241 GCGAGTCTAGGGAATGTTAAATTCGGAAGAAAGATTCAGTCTTTAGTTATTCGGTCTGGG 300
Query 301 TTTTGTGCTTCGTCACCGGTTAATAATTCGCTGATTGACATGTATGGTAAGTGCTCTGAT 360
||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TTTTGTGCTTCTTTGCCGGTTAATAATTCGCTTATTGACATGTATGGTAAGTGCTCTGAT 360
Query 361 ACTCTTAGCGCAAACAAAGTGTTTCGAGATATGTGCTGTCATAGTAGAAATGAAGTGACT 420
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 361 ACTCTTAGCGCAAACAAAGTGTTTCGAGATATGTGCTGTGATAGTAGAAATGAAGTAACT 420
Query 421 TGGTGCTCACTTTTGTTTGCCTACATGAATGCTGAACAGTTTGAAGCCGCCCACGATGTT 480
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 421 TGGTGCTCACTTTTGTTTGCCTACATGAATGCTGAACAGTTTGAAGCTGCACTTGATGTT 480
Query 481 TTTGTTGAAATGCCGAAAAGGGTGCCGTTTGCTTGGAATATAATGATCTCAGGGCATGCT 540
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 481 TTTGTTGAAATGCCGAAAAGGGTGGCATTTGCTTGGAATATAATGATCTCAGGGCATGCT 540
Query 541 CAATGTGGAAAGATTGAATCTTGTTTAAGGTTATTCCAAGAGATGCTGGAGAGTGAGTTC 600
|| ||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 541 CACTGTGGAAAGCTTGAATCTTGTTTAAGTTTATTCAAAGAGATGCTGGAAAGTGAGTTC 600
Query 601 GAACCGGATTGTTATACGTTTAGTTCTCTGATGAATGCTTG---TGCTGATTCATCAAAC 657
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 601 AAACCGGATTGTTATACGTTTAGTTCTTTGATGAATGCTTGTTCTGCTGATTCATCAAAC 660
Query 658 GTGGTTTATGGATGGATGGTACATGCTGTTATGGTGAGGAATGGATGGTATTCTGCGGTT 717
|||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct 661 GTGGTTTATGGACGGATGGTACATGCTGTTATGTTGAAGAATGGATGGTCTTCTGCGGTT 720
Query 718 GAGGCAAAAAATTCTGTGTTAAGTTTCTACGCGAAATTAGGCTGCAAAGATGATGTCATG 777
|||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||
Sbjct 721 GAGGCAAAAAATTCTGTGTTAAGTTTCTACACGAAATTAGGCAGCAGAGATGATGCCATG 780
Query 778 AGAGAGCTCGAGTCTATTGAAGTCCTGACTCAGGTATCCTGGAATTCTATTATTGACGCG 837
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 781 AGAGAGCTTGAGTCTATTGAAGTTCTGACGCAGGTATCCTGGAATTCTATTATTGACGCG 840
Query 838 TGTATGAAAGTAGGAGAAACAGATAAAGCTCTTGAGGTGTTTCGTTTGGCCCCTGAGAAA 897
||||||||| | ||||||||||| ||||||||||||||||||| | | ||||||||||||
Sbjct 841 TGTATGAAAATTGGAGAAACAGAGAAAGCTCTTGAGGTGTTTCATCTAGCCCCTGAGAAA 900
Query 898 AATATTGTTACTTGGACTACGATGATTGCAGGATATGGTAGGAATGGAGATGGAGAGCAA 957
||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 901 AATATCGTTACTTGGACTACTATGATTACAGGATATGGTAGGAATGGAGATGGTGAGCAA 960
Query 958 GCACTGAGtttttttGTCGAAATGATGAAATCTGGGGTGGATTCTGATCATTTTGCATAT 1017
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 961 GCACTGAGATTTTTTGTCGAAATGATGAAATCTGGAGTGGATTCAGATCATTTTGCATAT 1020
Query 1018 GGTGCAGTTCTTCACGCGTGTTCAGGTTTAGCCCTTTTAGGACATGGAAAAATGATCCAT 1077
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGTGCAGTTCTTCATGCATGTTCAGGTTTAGCCCTTTTAGGACATGGAAAAATGATCCAT 1080
Query 1078 GGTTGTCTGATCCATTGTGGCTTTCAAGGTTATGCTTATGTTGGTAACGCCTTGGTTAAT 1137
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 GGTTGTCTGATTCATTGTGGGTTTCAAGGTTATGCTTATGTTGGTAACGCGTTGGTTAAT 1140
Query 1138 TTGTATGCCAAGTGTGGAGATATTAAGGAATCAAACCGTGCGTTTGGTGATATAGCTAAC 1197
|||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1141 TTGTATGCAAAGTGTGGAGATATTAAAGAGGCAGACCGTGCGTTTGGTGATATAGCTAAC 1200
Query 1198 AAGGATTTGGTATCTTGGAACACAATGCTTTTTGCATTTGGTGTCCACGGGTTAGCAGAT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAGGATTTGGTATCTTGGAACACAATGCTTTTTGCATTTGGTGTCCACGGGTTAGCAGAT 1260
Query 1258 CAAGCTTTAGAGCTCTATGACAACATGATAGCGTCAGGGATTAAACCAGACAATGTGACA 1317
||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1261 CAAGCTTTAAAGCTCTATGACAATATGATAGCATCAGGGATTAAACCAGACAATGTGACA 1320
Query 1318 TTCATTGGATTGCTGACAACTTGCAGCCATTCAGGCCTTGTAGAGAAAGGTTGTGCGATA 1377
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 1321 TTCATTGGATTGCTGACAACTTGCAGTCATTCAGGCCTTGTAGAGGAAGGTTGCATGATT 1380
Query 1378 TTCGAATCCATGGTTAAAGATTATGGAATCCCATTGGAAGTAGATCATGTAACATGTATG 1437
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1381 TTCGAATCCATGGTTAAAGATTATAGAATCCCATTGGAAGTAGATCATGTAACATGTATG 1440
Query 1438 ATAGATATGTTTGGGAGAGGTGGACATCTAGCAGAAGCAAAGGACTTGGCGACAACTTAC 1497
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1441 ATAGATATGTTTGGAAGAGGTGGACATTTAGCAGAAGCAAAAGACTTGGCGACAACTTAC 1500
Query 1498 AATTCACTAGTCATTAA-TGCTAGTAACAATAGTTCATGGGAAGCTCTTTTGGGTGCTTG 1556
| |||||| |||| | | ||||||| ||||||||||||||| ||||||| ||||||||
Sbjct 1501 AGTTCACTTGTCACCGACT-CTAGTAATAATAGTTCATGGGAAACTCTTTTAGGTGCTTG 1559
Query 1557 TTCTACACATTGGCACACAGAATTAGGCAGAGAAGTTAGCAAAGTTCTAAAGATAGCAGA 1616
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1560 TTCTACACATTGGCATACAGAATTAGGTAGAGAAGTTAGCAAAGTTCTAAAGATAGCAGA 1619
Query 1617 ACCAAGTGAAGAGATGAGTTTTGTTCTGTTATCCAACTTGTACTGCTCGAGTGGGCGGTG 1676
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1620 ACCAAGTGAAGAGATGAGTTTTGTTCTGTTATCCAACTTGTACTGCTCGACTGGGCGGTG 1679
Query 1677 GAAGGAAG-CTGAAGAGGTGAGGAGAGAAATGGTTGAGCGAGGAATGAGGAAAACACCGG 1735
|||||||| | ||||| ||||||||||||||||| |||||||| |||| ||||| ||||
Sbjct 1680 GAAGGAAGGC-GAAGATGTGAGGAGAGAAATGGTCGAGCGAGGCATGAAAAAAACTCCGG 1738
Query 1736 GATGTAGCTGGATAGAAGTAGGAAACCGGGTTTCAACTTTTGTAGTCGGTGGTTCTTCAC 1795
||||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 1739 GATGTAGCTGGATCGAAGTAGGAAACCAGGTTTCTACTTTTGTAGTCGGTGACTCTTCAC 1798
Query 1796 ACCCGCGCTTGGAGGAGCTTTCTGAAACTTTAAACTGCCTTCAACATGAAATGAGAAACC 1855
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1799 ACCCGCGCTTGGAGGAGCTTTCTGAAACTCTAAACTGCCTTCAACATGAAATGAGAAACC 1858
Query 1856 CAGAGACGTTTGGACCTTGA 1875
||||||||||||||||||||
Sbjct 1859 CAGAGACGTTTGGACCTTGA 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92820807705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5