BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482681

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36985.1 | Symbols: ROT4, DVL16 | DVL family protein | chr2:...   477    3e-134


> AT2G36985.1 | Symbols: ROT4, DVL16 | DVL family protein | chr2:15534779-15535192 
REVERSE LENGTH=414
Length=414

 Score =  477 bits (258),  Expect = 3e-134
 Identities = 302/322 (94%), Gaps = 7/322 (2%)
 Strand=Plus/Plus

Query  1    AACTCTTCAATTTCTTGCACTTTTTTATATTGTGGTCGGACTCACAAATTAAGAGAAGAA  60
            |||||||| |||||||||||||||||||||| |||||||||||||    |||||| ||||
Sbjct  25   AACTCTTCCATTTCTTGCACTTTTTTATATTTTGGTCGGACTCAC----TAAGAGCAGAA  80

Query  61   ACCAATCAATGGCACCGGAGGAGAAAGGCACGTGTGAGCCGTGCAAGACCTTTGGGCAAA  120
            || |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  81   ACAAATCAATGGCACCGGAGGAGAATGGCACGTGTGAGCCGTGCAAGACTTTTGGGCAAA  140

Query  121  AGTGCAGTCATGTCGTGAAGAAACAAAGAGCCAAGTTTTACATTGTTCGCCGTTGTATCG  180
            ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  141  AGTGCAGCCATGTCGTGAAGAAACAAAGAGCCAAGTTTTACATTCTTCGCCGTTGTATCG  200

Query  181  CCATGTTAGTCTGCTGGCACGACCACAACCACGACCGCAAAGACTCTTGATTATTTTC-T  239
            |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct  201  CCATGTTAGTTTGCTGGCACGACCAGAACCACGACCGCAAAGACTCTTGATTACTTTCTT  260

Query  240  CTTATTGGATTGTCATCTTCATATTTTAAAAATAATATATATCTACATATCAATGTGCAT  299
            ||||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct  261  CTTATTGGATTGTTATCTTCATATTTTAAAAATAAT-T-TATCTACATATTAATGTGCAT  318

Query  300  ACGTATATTAGAGAAGATTGAA  321
            ||||||||||||||||||||||
Sbjct  319  ACGTATATTAGAGAAGATTGAA  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5