BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482683 Length=698 Score E Sequences producing significant alignments: (Bits) Value AT2G37000.1 | Symbols: | TCP family transcription factor | ch... 750 0.0 > AT2G37000.1 | Symbols: | TCP family transcription factor | chr2:15540299-15541248 FORWARD LENGTH=950 Length=950 Score = 750 bits (406), Expect = 0.0 Identities = 568/643 (88%), Gaps = 24/643 (4%) Strand=Plus/Plus Query 1 CTCCTTTAGGAACCCTAAGATTTTCTCTGTTAATCAGAAAAAGCTTGTTCATCATCACTG 60 ||||||||| |||||||||||| ||||||| |||| |||||||||| |||||| Sbjct 9 CTCCTTTAGTAACCCTAAGATTCTCTCTGTGAATC--------CTTGTTCATCGTCACTG 60 Query 61 AAATTAGTTTACAAAATCGACGAATTCGGAGATGATTTTTCAGAAAT-TGTGCACAAATG 119 ||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| Sbjct 61 AAATTAGTTTACAAAATCGACGAATTCGGAGATGATTTTTCAGAA-TGTGTGCAGAAATG 119 Query 120 AGTCCAACCTCAACGCTATAGCTTCCAAATCGCGTTTTCAAACGCAGATCGGTGTTTCGA 179 |||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||| Sbjct 120 AGTCCAACTTCAACGCTATAGCTTCCGAATCGCGTTCCCAAACGCAGTTCGGTGTTTCGA 179 Query 180 AATCCTCCTTTG-GCGGCTGCGG-TCGTATCTCCGCCAGGTCTAAAGACCGTCACACTAA 237 ||||||||| | ||||| |||| | |||||||||||||| |||||||||||||||| || Sbjct 180 AATCCTCCTC-GAGCGGCGGCGGAT-GTATCTCCGCCAGGACTAAAGACCGTCACACGAA 237 Query 238 GGTTGAGGGAAGAAGTCGTCGAGTTATGATGCCGGCTCTCGTCGCCGCTAGGATTTTTCA 297 |||| | ||| |||| |||||||||| |||||||||||||| ||||||||||||||| || Sbjct 238 GGTTAACGGACGAAGCCGTCGAGTTACGATGCCGGCTCTCGCCGCCGCTAGGATTTTCCA 297 Query 298 GTTGACGCGTGAGCTCGGTCACAAAACTGATGGAGAAACCATTGAATGGCTTCTTAGTCA 357 ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 298 GTTAACGCGTGAGCTCGGTCACAAAACTGAAGGAGAAACCATCGAATGGCTTCTTAGTCA 357 Query 358 AGCTGAACCGTCGATTATTGCCGCTACTGGCTCCGGGACTAAGC-CGATTTCGAATTCGG 416 |||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||| || Sbjct 358 AGCTGAACCGTCGATTATTGCCGCCACTGGCTACGGGACTAAGCTC-ATTTCGAATTGGG 416 Query 417 TTGGTGTTGCGGCGGTTGATTCCTCGTCG-C--CG---ATGATGTTTGCTATGAT-GCAA 469 ||| ||||||||||| |||||||||||| | || |||| || || | |||| Sbjct 417 TTGATGTTGCGGCGGACGATTCCTCGTCGTCGTCGTCGATGACGTC-GCCGCAAACGCAA 475 Query 470 ACGCAAACGCAAGAATCGCCGAGCTGTACGCTGGATCTGTGTCAGCCAATCGGAACTCAG 529 |||||||||| | |||||||||| |||| | ||||||| |||||||||||||||| |||| Sbjct 476 ACGCAAACGCCACAATCGCCGAGTTGTAGGTTGGATCTTTGTCAGCCAATCGGAATTCAG 535 Query 530 TATCCGGTGAATGGTTACAGTCATATGCCGTTCACAGCCATGCTTTTACAACCGATGACC 589 |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| Sbjct 536 TATCCGGTGAATGGTTACAGTCATATGCCGTTCACAGCGATGCTTTTAGAGCCGATGACC 595 Query 590 ACGGCGGCGGATTCTGACGTTGAGATCGCGGCGGAGGAGGAAC 632 ||| ||||||| ||||| ||||||||||||| ||||||||||| Sbjct 596 ACGACGGCGGAATCTGAGGTTGAGATCGCGGAGGAGGAGGAAC 638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33807580931 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5