BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482683
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37000.1 | Symbols: | TCP family transcription factor | ch... 750 0.0
> AT2G37000.1 | Symbols: | TCP family transcription factor |
chr2:15540299-15541248 FORWARD LENGTH=950
Length=950
Score = 750 bits (406), Expect = 0.0
Identities = 568/643 (88%), Gaps = 24/643 (4%)
Strand=Plus/Plus
Query 1 CTCCTTTAGGAACCCTAAGATTTTCTCTGTTAATCAGAAAAAGCTTGTTCATCATCACTG 60
||||||||| |||||||||||| ||||||| |||| |||||||||| ||||||
Sbjct 9 CTCCTTTAGTAACCCTAAGATTCTCTCTGTGAATC--------CTTGTTCATCGTCACTG 60
Query 61 AAATTAGTTTACAAAATCGACGAATTCGGAGATGATTTTTCAGAAAT-TGTGCACAAATG 119
||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||
Sbjct 61 AAATTAGTTTACAAAATCGACGAATTCGGAGATGATTTTTCAGAA-TGTGTGCAGAAATG 119
Query 120 AGTCCAACCTCAACGCTATAGCTTCCAAATCGCGTTTTCAAACGCAGATCGGTGTTTCGA 179
|||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 120 AGTCCAACTTCAACGCTATAGCTTCCGAATCGCGTTCCCAAACGCAGTTCGGTGTTTCGA 179
Query 180 AATCCTCCTTTG-GCGGCTGCGG-TCGTATCTCCGCCAGGTCTAAAGACCGTCACACTAA 237
||||||||| | ||||| |||| | |||||||||||||| |||||||||||||||| ||
Sbjct 180 AATCCTCCTC-GAGCGGCGGCGGAT-GTATCTCCGCCAGGACTAAAGACCGTCACACGAA 237
Query 238 GGTTGAGGGAAGAAGTCGTCGAGTTATGATGCCGGCTCTCGTCGCCGCTAGGATTTTTCA 297
|||| | ||| |||| |||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct 238 GGTTAACGGACGAAGCCGTCGAGTTACGATGCCGGCTCTCGCCGCCGCTAGGATTTTCCA 297
Query 298 GTTGACGCGTGAGCTCGGTCACAAAACTGATGGAGAAACCATTGAATGGCTTCTTAGTCA 357
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 298 GTTAACGCGTGAGCTCGGTCACAAAACTGAAGGAGAAACCATCGAATGGCTTCTTAGTCA 357
Query 358 AGCTGAACCGTCGATTATTGCCGCTACTGGCTCCGGGACTAAGC-CGATTTCGAATTCGG 416
|||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||| ||
Sbjct 358 AGCTGAACCGTCGATTATTGCCGCCACTGGCTACGGGACTAAGCTC-ATTTCGAATTGGG 416
Query 417 TTGGTGTTGCGGCGGTTGATTCCTCGTCG-C--CG---ATGATGTTTGCTATGAT-GCAA 469
||| ||||||||||| |||||||||||| | || |||| || || | ||||
Sbjct 417 TTGATGTTGCGGCGGACGATTCCTCGTCGTCGTCGTCGATGACGTC-GCCGCAAACGCAA 475
Query 470 ACGCAAACGCAAGAATCGCCGAGCTGTACGCTGGATCTGTGTCAGCCAATCGGAACTCAG 529
|||||||||| | |||||||||| |||| | ||||||| |||||||||||||||| ||||
Sbjct 476 ACGCAAACGCCACAATCGCCGAGTTGTAGGTTGGATCTTTGTCAGCCAATCGGAATTCAG 535
Query 530 TATCCGGTGAATGGTTACAGTCATATGCCGTTCACAGCCATGCTTTTACAACCGATGACC 589
|||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 536 TATCCGGTGAATGGTTACAGTCATATGCCGTTCACAGCGATGCTTTTAGAGCCGATGACC 595
Query 590 ACGGCGGCGGATTCTGACGTTGAGATCGCGGCGGAGGAGGAAC 632
||| ||||||| ||||| ||||||||||||| |||||||||||
Sbjct 596 ACGACGGCGGAATCTGAGGTTGAGATCGCGGAGGAGGAGGAAC 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5