BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482686 Length=1550 Score E Sequences producing significant alignments: (Bits) Value AT2G37025.1 | Symbols: TRFL8 | TRF-like 8 | chr2:15549052-15552... 1406 0.0 > AT2G37025.1 | Symbols: TRFL8 | TRF-like 8 | chr2:15549052-15552105 FORWARD LENGTH=1589 Length=1589 Score = 1406 bits (761), Expect = 0.0 Identities = 934/1014 (92%), Gaps = 25/1014 (2%) Strand=Plus/Plus Query 1 ATCGTTGCGGACTTGAAACGCACGTTATATTACACGGTGTCTTACGTCA-TTTGGATTTC 59 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1 ATCGTTGCGGACTTGAAACGCACGTTATATTTGACGGTGTCTTACGTCATTTTGGATTTC 60 Query 60 AAAATTAAATAAATCAGCTTTTGGAATCCCAAACCaaaaaaaaaacaaaaaaacaaaaTC 119 |||| |||||||||||||||||||||||| ||| | ||| |||||||||||||||| Sbjct 61 AAAACTAAATAAATCAGCTTTTGGAATCCGAAA-C-----AAAGACAAAAAAACAAAATC 114 Query 120 CTAAGTCCAACAGTCGCCATTTCACCTCCTGCGTCAGAGTTCTTCGTCTCCTCTCGTCGT 179 | ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 115 C-AAGTCTAACAGTCGCCATTTCCCCTCCTGCGTCAGTGTTCTTCGTCTCCTCTCGTCGT 173 Query 180 CTCTGTTTGTGTAAAAACTTGGACCTTGACTTGAAATGGGACCTTTTGGGATGGACACAA 239 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 174 CTCTCTTTGTGTAAAAACTTGGACCTTGACTTGAAATGGGACCTTTTGGGATGGAAACAA 233 Query 240 CACCAGAG-TTTCCTGATACTTTTGCTGGATTCAAGTCTGGCAGTGTTGATGAGATTCTT 298 |||| | | |||||||||||||||||||||||||| |||| |||||||||||||| |||| Sbjct 234 CACCCG-GTTTTCCTGATACTTTTGCTGGATTCAAATCTGCCAGTGTTGATGAGAATCTT 292 Query 299 GGTCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTAATCAT 358 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 293 GGCCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTCATCAT 352 Query 359 GACAATACTGCGGTGAACAGTTTCTTAGGTCTCGGTATGGAGAATATGGGGTTAAGCTCC 418 || ||||| |||||| |||||||||||||||| ||||||||||||||||| |||| |||| Sbjct 353 GATAATACCGCGGTGGACAGTTTCTTAGGTCTTGGTATGGAGAATATGGGCTTAACCTCC 412 Query 419 AAGATGGAGGAATTTTCTCATGGATTTGACTTTAGCTTTCTCCCAGATTATGGTGGACTA 478 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| | Sbjct 413 AAGATGGAGGAGTTTTCACATGGATTTGACGTTAGCTTTCTCCCAGATTATGGTGGAGTT 472 Query 479 AACTCTTATAGCACTAAAGATGTGGAAGCAGGTTTGAAGTTTGAGATTCTTGATGGATTT 538 ||| ||| ||||||| ||||||||||||||||||| |||||||| |||||||||||| || Sbjct 473 AACACTTTTAGCACTCAAGATGTGGAAGCAGGTTTAAAGTTTGAAATTCTTGATGGAATT 532 Query 539 CTGGATGGAGTCGATGAAGTGGAAGATATCTACGCATCACATGATCTTTCTTCTATTGGT 598 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 533 CTGGATGGAGTTGATGAAGTGGAAGATATCTACGCATCACATGAGCTTTCTTCTATTGTT 592 Query 599 AACCATTTCCTTCCAGAAACTGAAGTCAAGAAGAAAGTATCTGAATTAGATGGTGACCCC 658 |||||||||| |||||||||||||||||||||||| | |||||||| ||||||||| Sbjct 593 AACCATTTCCCTCCAGAAACTGAAGTCAAGAAGAA--T----GAATTAGAGGGTGACCCC 646 Query 659 TATGGTCTTATGAACTTGAGTTCAGAATCTTTTTCTCCTGGAATTAGTGGAAGCATTGGA 718 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| Sbjct 647 TATGGTCTTATGAACTTCAGTTCAGAATCTTATTCTCCTGGAATTAGTGGAAGCATCGGA 706 Query 719 CTCTCGGAGTGGTCAAAAGAAACTGTTCCACATGCTGAATCCCAGAATGTATCCAGCGAA 778 ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 707 CTCGCGGAGTGGTCAAAAGAAACTGTTCCATATGCTGAATCCCAGATTGTATCCAGCGAA 766 Query 779 AA-GTTTAAAGATAGTTTGGACT-CAAATGAGTCAGAAGATGACAAGAAACCACTATCCA 836 || ||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||| Sbjct 767 AAAGTT-AAAGATAGTTGGGA-TACAAATGAGTCAGAAGATGACAAGAAACCACTATCCA 824 Query 837 CTTTTATAGGCTCTTGGGTTAAACGAGGCAAAAATCGGAAAAAGAATTTGCTCAACACCG 896 | ||||||||||||||| |||||||| || ||||||||| |||| ||||||||||||| Sbjct 825 CATTTATAGGCTCTTGGATTAAACGA---AAGAATCGGAAACAGAAATTGCTCAACACCG 881 Query 897 CTTGTAGGAGATTAGATTCTTCTCGTGAAAGAATGTCTTGCGTGTCCTATGACTTCAGGC 956 ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 882 CTTGTAGTAGATTAGATTCTTCTCGTGAAAGAAAGTCTTGCGAGTCCTATGACTTCAGGC 941 Query 957 CCCGGAAAGGACCTATGAAGAAATACATTCACATTTCAACTG-AGAATACATTT 1009 ||||||||||||||||||||||||||||||||| ||||| || |||| |||||| Sbjct 942 CCCGGAAAGGACCTATGAAGAAATACATTCACACTTCAA-TGGAGAAAACATTT 994 Score = 704 bits (381), Expect = 0.0 Identities = 486/534 (91%), Gaps = 17/534 (3%) Strand=Plus/Plus Query 1033 AACCAGAAGTGACAGGAGAAAGAATCAGAGGATGTGGACTGTTGATGAAGTGATGAAGTT 1092 ||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||| || Sbjct 1057 AACCAAAAGTGACAGGAGAAAGAATCAGAGGATATGGACTCTTGATGAAGTAATGAATTT 1116 Query 1093 GGTTGATGGTATTTCTCACTTTGGTGTAGGAAAATGGACCGATATAAAGAACCTCTTCTT 1152 ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| Sbjct 1117 GGTTGATGGTATTTCTCACTTTGGTGTTGGGAAATGGACCGATATAAAGAACCACTTCTT 1176 Query 1153 TCATTCTGCAGCGCACCGCACACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAA 1212 ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1177 TCATTATGCAGCACACCGCAAACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAA 1236 Query 1213 AGCAAGTTATAAC-----G-AT-A-GA--G--AGGCTGAAGAAAAACGAAAGTCAGTGGC 1260 ||||||||||||| | || | || | |||||||||||||||||||||||||||| Sbjct 1237 AGCAAGTTATAACGAAAAGCATAACGATGGACAGGCTGAAGAAAAACGAAAGTCAGTGGC 1296 Query 1261 TCGCTCTATACCGAAGGAAATTCTACATCGTGTTAGAGAACTTGCTTCACTCCATCCATA 1320 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1297 TCGCTCTATACCGAAGGATATTCTACATCGTGTAAGAGAACTTGCTTCACTCCATCCATA 1356 Query 1321 TCCGTTCTCCAAATCATCTTGT-TTCGTTCATGATTCCTCAAGAAGCCGAAGCACTTCAA 1379 ||| |||||||||||| | ||| || |||||||||||||||||||||||||||||||||| Sbjct 1357 TCCCTTCTCCAAATCACCGTGTATT-GTTCATGATTCCTCAAGAAGCCGAAGCACTTCAA 1415 Query 1380 GGAAGAAGAAGAAGAGGAGT---TGATATTAATAGTTTTCATGGAGAAAGCCTAGAGAAG 1436 ||| |||||||||| |||| ||||||| ||||| ||||||||||||| ||||||||| Sbjct 1416 AGAACAAGAAGAAGAAGAGTGGATGATATTGATAGTCTTCATGGAGAAAGTCTAGAGAAG 1475 Query 1437 CTGTAAAGATACTAAAATCGTTTTAATTGTCTTGGAAAGTTGTTCCATGTGAAGTTTCTG 1496 || || ||||||| ||||||||||| ||| |||| |||||||||||||||||||||||| Sbjct 1476 CTATATAGATACTTGAATCGTTTTAACTGTGTTGGGAAGTTGTTCCATGTGAAGTTTCTG 1535 Query 1497 TTAATGAAACCGAGAATGACTTCAATTCAGAAAAGCATTTTGCTTATTTCCTCT 1550 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1536 TTAATGAAACCGAGAATGACTTCAATTCAGAAAAGCATTTAGCTTATTCCCTCT 1589 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76505630580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5