BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482686
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37025.1 | Symbols: TRFL8 | TRF-like 8 | chr2:15549052-15552... 1406 0.0
> AT2G37025.1 | Symbols: TRFL8 | TRF-like 8 | chr2:15549052-15552105
FORWARD LENGTH=1589
Length=1589
Score = 1406 bits (761), Expect = 0.0
Identities = 934/1014 (92%), Gaps = 25/1014 (2%)
Strand=Plus/Plus
Query 1 ATCGTTGCGGACTTGAAACGCACGTTATATTACACGGTGTCTTACGTCA-TTTGGATTTC 59
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1 ATCGTTGCGGACTTGAAACGCACGTTATATTTGACGGTGTCTTACGTCATTTTGGATTTC 60
Query 60 AAAATTAAATAAATCAGCTTTTGGAATCCCAAACCaaaaaaaaaacaaaaaaacaaaaTC 119
|||| |||||||||||||||||||||||| ||| | ||| ||||||||||||||||
Sbjct 61 AAAACTAAATAAATCAGCTTTTGGAATCCGAAA-C-----AAAGACAAAAAAACAAAATC 114
Query 120 CTAAGTCCAACAGTCGCCATTTCACCTCCTGCGTCAGAGTTCTTCGTCTCCTCTCGTCGT 179
| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 115 C-AAGTCTAACAGTCGCCATTTCCCCTCCTGCGTCAGTGTTCTTCGTCTCCTCTCGTCGT 173
Query 180 CTCTGTTTGTGTAAAAACTTGGACCTTGACTTGAAATGGGACCTTTTGGGATGGACACAA 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 174 CTCTCTTTGTGTAAAAACTTGGACCTTGACTTGAAATGGGACCTTTTGGGATGGAAACAA 233
Query 240 CACCAGAG-TTTCCTGATACTTTTGCTGGATTCAAGTCTGGCAGTGTTGATGAGATTCTT 298
|||| | | |||||||||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 234 CACCCG-GTTTTCCTGATACTTTTGCTGGATTCAAATCTGCCAGTGTTGATGAGAATCTT 292
Query 299 GGTCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTAATCAT 358
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 293 GGCCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTCATCAT 352
Query 359 GACAATACTGCGGTGAACAGTTTCTTAGGTCTCGGTATGGAGAATATGGGGTTAAGCTCC 418
|| ||||| |||||| |||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 353 GATAATACCGCGGTGGACAGTTTCTTAGGTCTTGGTATGGAGAATATGGGCTTAACCTCC 412
Query 419 AAGATGGAGGAATTTTCTCATGGATTTGACTTTAGCTTTCTCCCAGATTATGGTGGACTA 478
||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct 413 AAGATGGAGGAGTTTTCACATGGATTTGACGTTAGCTTTCTCCCAGATTATGGTGGAGTT 472
Query 479 AACTCTTATAGCACTAAAGATGTGGAAGCAGGTTTGAAGTTTGAGATTCTTGATGGATTT 538
||| ||| ||||||| ||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 473 AACACTTTTAGCACTCAAGATGTGGAAGCAGGTTTAAAGTTTGAAATTCTTGATGGAATT 532
Query 539 CTGGATGGAGTCGATGAAGTGGAAGATATCTACGCATCACATGATCTTTCTTCTATTGGT 598
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 533 CTGGATGGAGTTGATGAAGTGGAAGATATCTACGCATCACATGAGCTTTCTTCTATTGTT 592
Query 599 AACCATTTCCTTCCAGAAACTGAAGTCAAGAAGAAAGTATCTGAATTAGATGGTGACCCC 658
|||||||||| |||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 593 AACCATTTCCCTCCAGAAACTGAAGTCAAGAAGAA--T----GAATTAGAGGGTGACCCC 646
Query 659 TATGGTCTTATGAACTTGAGTTCAGAATCTTTTTCTCCTGGAATTAGTGGAAGCATTGGA 718
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 647 TATGGTCTTATGAACTTCAGTTCAGAATCTTATTCTCCTGGAATTAGTGGAAGCATCGGA 706
Query 719 CTCTCGGAGTGGTCAAAAGAAACTGTTCCACATGCTGAATCCCAGAATGTATCCAGCGAA 778
||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 707 CTCGCGGAGTGGTCAAAAGAAACTGTTCCATATGCTGAATCCCAGATTGTATCCAGCGAA 766
Query 779 AA-GTTTAAAGATAGTTTGGACT-CAAATGAGTCAGAAGATGACAAGAAACCACTATCCA 836
|| ||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 767 AAAGTT-AAAGATAGTTGGGA-TACAAATGAGTCAGAAGATGACAAGAAACCACTATCCA 824
Query 837 CTTTTATAGGCTCTTGGGTTAAACGAGGCAAAAATCGGAAAAAGAATTTGCTCAACACCG 896
| ||||||||||||||| |||||||| || ||||||||| |||| |||||||||||||
Sbjct 825 CATTTATAGGCTCTTGGATTAAACGA---AAGAATCGGAAACAGAAATTGCTCAACACCG 881
Query 897 CTTGTAGGAGATTAGATTCTTCTCGTGAAAGAATGTCTTGCGTGTCCTATGACTTCAGGC 956
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 882 CTTGTAGTAGATTAGATTCTTCTCGTGAAAGAAAGTCTTGCGAGTCCTATGACTTCAGGC 941
Query 957 CCCGGAAAGGACCTATGAAGAAATACATTCACATTTCAACTG-AGAATACATTT 1009
||||||||||||||||||||||||||||||||| ||||| || |||| ||||||
Sbjct 942 CCCGGAAAGGACCTATGAAGAAATACATTCACACTTCAA-TGGAGAAAACATTT 994
Score = 704 bits (381), Expect = 0.0
Identities = 486/534 (91%), Gaps = 17/534 (3%)
Strand=Plus/Plus
Query 1033 AACCAGAAGTGACAGGAGAAAGAATCAGAGGATGTGGACTGTTGATGAAGTGATGAAGTT 1092
||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||
Sbjct 1057 AACCAAAAGTGACAGGAGAAAGAATCAGAGGATATGGACTCTTGATGAAGTAATGAATTT 1116
Query 1093 GGTTGATGGTATTTCTCACTTTGGTGTAGGAAAATGGACCGATATAAAGAACCTCTTCTT 1152
||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 1117 GGTTGATGGTATTTCTCACTTTGGTGTTGGGAAATGGACCGATATAAAGAACCACTTCTT 1176
Query 1153 TCATTCTGCAGCGCACCGCACACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAA 1212
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TCATTATGCAGCACACCGCAAACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAA 1236
Query 1213 AGCAAGTTATAAC-----G-AT-A-GA--G--AGGCTGAAGAAAAACGAAAGTCAGTGGC 1260
||||||||||||| | || | || | ||||||||||||||||||||||||||||
Sbjct 1237 AGCAAGTTATAACGAAAAGCATAACGATGGACAGGCTGAAGAAAAACGAAAGTCAGTGGC 1296
Query 1261 TCGCTCTATACCGAAGGAAATTCTACATCGTGTTAGAGAACTTGCTTCACTCCATCCATA 1320
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1297 TCGCTCTATACCGAAGGATATTCTACATCGTGTAAGAGAACTTGCTTCACTCCATCCATA 1356
Query 1321 TCCGTTCTCCAAATCATCTTGT-TTCGTTCATGATTCCTCAAGAAGCCGAAGCACTTCAA 1379
||| |||||||||||| | ||| || ||||||||||||||||||||||||||||||||||
Sbjct 1357 TCCCTTCTCCAAATCACCGTGTATT-GTTCATGATTCCTCAAGAAGCCGAAGCACTTCAA 1415
Query 1380 GGAAGAAGAAGAAGAGGAGT---TGATATTAATAGTTTTCATGGAGAAAGCCTAGAGAAG 1436
||| |||||||||| |||| ||||||| ||||| ||||||||||||| |||||||||
Sbjct 1416 AGAACAAGAAGAAGAAGAGTGGATGATATTGATAGTCTTCATGGAGAAAGTCTAGAGAAG 1475
Query 1437 CTGTAAAGATACTAAAATCGTTTTAATTGTCTTGGAAAGTTGTTCCATGTGAAGTTTCTG 1496
|| || ||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 1476 CTATATAGATACTTGAATCGTTTTAACTGTGTTGGGAAGTTGTTCCATGTGAAGTTTCTG 1535
Query 1497 TTAATGAAACCGAGAATGACTTCAATTCAGAAAAGCATTTTGCTTATTTCCTCT 1550
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1536 TTAATGAAACCGAGAATGACTTCAATTCAGAAAAGCATTTAGCTTATTCCCTCT 1589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76505630580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5