BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482688

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37030.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   627    3e-179


> AT2G37030.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:15553732-15554106 FORWARD LENGTH=375
Length=375

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 363/375 (97%), Gaps = 0/375 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGAGCAAGTTCATTAAGTCCTGCGAAAAGAAACTGAAAAAGATGACAACCAAAGTC  60
            |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct  1    ATGAAGAGCAAGTTCATTAAGTCCTGTGAAAAGAAACTGAAAAAGATGACGAGCAAAGTC  60

Query  61   ATAATACCTTGTGCGTCTTGCGAGGCATGCTACGATAGAATTTGCTGGGCATTCAAGAAG  120
            |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct  61   ATAATACCTTGTGCGTCTTGCGAGTCATGCTACGAGAGAATTTGCTGGGCATTCAAGAAG  120

Query  121  GAAGCTGAGGTGATACCAAGAGATGTCCCTAAGGGACACTTGGTTGTCTATGTGGGTGAA  180
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  GAAGCTGAGGTGATTCCAAGAGATGTCCCTAAGGGACATTTGGTTGTCTATGTGGGTGAA  180

Query  181  GAGTACAAGAGGTTTGTGATAAAGATCAACTTGCTTAAACACCCACTCTTCCAAGCATTG  240
            ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  181  GAGTACAAGAGGTTTGTGATAAATATCAACCTGCTTAAACACCCACTCTTCCAAGCATTG  240

Query  241  CTGGATCAAGCACAAGATGCTTACGGTTTCAGTGCTGACTCCAGACTATGGATTCCATGC  300
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTGGATCAAGCACAGGATGCTTACGGTTTCAGTGCTGACTCCAGACTATGGATTCCATGC  300

Query  301  AATGAGAGTACTTTCCTCGATGTTGTCCGTTGCGCTGGTGCTCCTCAGCATCAGAATAAC  360
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct  301  AATGAGAGTACTTTCCTCGATGTTGTCCGTTGCGCTGGTGCACCCCAGCATCAGAATAAC  360

Query  361  TGCATATGTATCTAG  375
            |||||||||||||||
Sbjct  361  TGCATATGTATCTAG  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5