BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482689
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37035.1 | Symbols: | unknown protein; Has 26 Blast hits to... 2556 0.0
> AT2G37035.1 | Symbols: | unknown protein; Has 26 Blast hits
to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr2:15554917-15556831 REVERSE
LENGTH=1810
Length=1810
Score = 2556 bits (1384), Expect = 0.0
Identities = 1576/1669 (94%), Gaps = 11/1669 (1%)
Strand=Plus/Plus
Query 1 ATTCTCTCTCTTCTCGATCTACCCAAAGTAGCGGGAGCGAATAGTAAAACAATGTCCGAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATTCTCTCTCTTCTCGATCTACCCAAAGTAGCGGGAGCGAATAGTAAAACAATGACCGAT 60
Query 61 ---caccaccaccacc---accaccacGCGCGGCTGAGCCGCCTCCGTACAACAACCCAG 114
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CACCACCACCACCACCATAACCACCACGCGCGGCTGAGCCGCCTCCGTACAACAACACAG 120
Query 115 CTCCTCCGTCAAACCACAGcttctttctcttctcaccctctcactttcatcttcctcact 174
|||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTCCTCCGTCAAACAACATCTTCTTTCTCTTCCCACCCTCTCACTTTCATCTTCCTCACT 180
Query 175 ttcctcctcttctccttccactctctcgtcgatcattgctctcttctcttaacctctttc 234
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 181 TTCCTCCTCTTCTCTTTCCATTCTCTCGTCGATCATTGCTCTCTCCTCTTAACATCTTTC 240
Query 235 gtcgatagtgacccttctcttcgctctctcctctctcgcctccctcttaactctcactcC 294
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 241 GTCGACAGTGACCCTTCTCTTCGCTCTCTCCTCTCTCGACTCCCTCTTAACTCTCGCTCC 300
Query 295 CATACCCCCACGCGCTTCCACCATCACCGACGTGCTCCGTTTCTTCAGCTCACGCGCCTT 354
|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATACCCCGACGCGCTTCAATCATCACCGACGTGCTCCGTTTCTTCAGCTCACGCGCCTT 360
Query 355 GGTACCTTAGACGACGACTTCTTCTCCACCGACGAACACGATCCTCATCGCCGATCTCTT 414
|||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 361 GGTACCCTCGACGACGACTTCTTCTCCACAGACGAACACGATCCTCATCGCCGATCGCTT 420
Query 415 CAAGGCTCTTCCTTTCGTTCACCCATCAACGCTACGACTGTATTTCTCTCCGGATTCGAG 474
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct 421 CAAGGCTCTTCCTTTCGTTCACCCATCAACGCCACCACTGTATTCCTCTCCGGATTTGAG 480
Query 475 AGCATTTCTGGATTGTCTCGTCCAATCGCCGATAACGGACTTCTCCTTCCTCAAATCATT 534
||||||||||| || |||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 481 AGCATTTCTGGCTTCTCTCGTCCTATCATCGATAACGGACTTCTCCTTCCTCAGATCATT 540
Query 535 CGCTCCGGCGTCGTTTTACGGCAGCTCGAGAAGGACGATCTTGGCGGCGATGAAGAAGAT 594
|||||||| |||||||| |||||||| |||||||| || | ||||||||||||||| ||
Sbjct 541 CGCTCCGGTGTCGTTTTGCGGCAGCTTGAGAAGGAAGACCATGGCGGCGATGAAGACGAG 600
Query 595 ATGAAATTGGATGAATCTGAGCTCGATCGTGAAACTGAGAAGAAAGATAAAGAATTTGAG 654
| | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 601 ACGGAATTGGATGAATCTGAGCTCGATCGTGAAAGTGAGAAGAAAGATAAAGACTTTGAG 660
Query 655 AGTTTTGTGGATCTGAAGATGTTTTTTAAAGGATTGGAGTTAGGACGTCA-TGACGCTGC 713
||||||||||||||||||||| ||||||||||||||||| |||||||| | |||||| ||
Sbjct 661 AGTTTTGTGGATCTGAAGATGATTTTTAAAGGATTGGAGCTAGGACGT-AGTGACGCAGC 719
Query 714 GGCTCTGTTCTTCTTGGTGAGCTTTTTATCAGCTGCTTATGGATGGGTGATTTTAGGGTT 773
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 720 GGCTCTGTTCTTCTTGGTGAGCTTTTTATCAGCTGCGTATGGATGGGTGATTCTAGGGTT 779
Query 774 TACCACTGTTTACTCATTGGTGTTGGCGATTATGTTTGTTACTGTAATCAACGATTTGCT 833
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TACAACTGTTTACTCATTGGTGTTGGCGATTATGTTTGTTACTGTAATCAACGATTTGCT 839
Query 834 TGGTAGGTTTCCTTCGTTTCTTGGGGTTGTTTGGAGTGGTTCAAGATTGGGGTTTAAGAG 893
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 TGGTAGGTTTCCTTCGTTTCTTGGGGTTGTTTGGAGAGGTTCAAGATTGGGGTTTAAGAG 899
Query 894 AGTTACAGGATTCGTTTTAATGAGATGGGCAGTGAGAGATGCTTTGACACAGCTTCTTGG 953
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGTTACAGGATTTGTTTTAATGAGATGGGCAGTGAGAGATGCTTTGACACAGCTTCTTGG 959
Query 954 TTTATGGTATTTTGGAGAGGTTGAAGATCAGTTCTCGTTTTTCAGGCTCTTTGTGAGGTT 1013
||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 TTTATGGTACTTCGGAGAGGTTGAAGATCAGTACTCGTTTTTCAGGCTCTTTGTGAGGTT 1019
Query 1014 AAAGTTGATGCCTTTCACTGTTATGCCGCCATGGATTAGAGGCTTCGAGAAGGAGATATC 1073
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1020 AAAGCTGATGCCTTTCACTGTTATGCCGCCATGGATTAGAGGTTTTGAGAAGGAGATATC 1079
Query 1074 GGGTTTCTTGTTCGCTTGGTTTCTACTTGATACGCTTGTTGGTTTGATATTAGCTGTTGA 1133
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 TGGTTTCTTGTTCGCTTGGTTTCTACTTGATACACTTGTTGGTTTGATATTAGCTGTTGA 1139
Query 1134 TGCGTTTGTTGCTATTGTGGATTCGAGAAGGAGAGGAAGGGAGATAGTGAAGGAAGGGAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGCGTTTGTTGCTATTGTGGATTCGAGAAGGAGAGGAAGGGAGATAGTGAAGGAAGGGAA 1199
Query 1194 AAGCTTTGCTTCTGTGATCCAATCTGCGTTGGAAGTTTACTTCATGGCGGCTTGGTTAGT 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAGCTTTGCTTCTGTGATCCAATCTGCGTTGGAAGTTTACTTCATGGCGGCTTGGTTAGT 1259
Query 1254 GTTCTACTTAGCAGCTAAGTGTAAAGATGCGCACACAGACAGTAGGAGGTTTGGGAGAAG 1313
|||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1260 GTTCTACTTAGCAGCTAAGTGTAAAGATGCACACGCAGATGGTAGGAGGTTTGGGAGAAG 1319
Query 1314 AGAAATGGAGAACTTGATTGATGGGCTGAGATGATAATAAATTGGGGATTTCTAGGATAA 1373
||||||||||| |||||| ||||||||||||||||||| ||||| |||| | |||||| |
Sbjct 1320 AGAAATGGAGAGCTTGATCGATGGGCTGAGATGATAATGAATTGTGGATCTGTAGGATGA 1379
Query 1374 GCTTTTGGTTTCCAAAGGA-CTAAACCTTGGCTTCTATGCTTAATGCCAGTGGCTACATC 1432
|||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |||||
Sbjct 1380 GCTTTTTGTTTCCAAAGGAGC-AAACCTTGGCTTCGATGCTTAATGCCAGTGGCGACATC 1438
Query 1433 TCTGTGCCACAAGTTGTCATGACTTTAGGTTCCTTTGGTTTTAGAATTACAGTTAATTGA 1492
||||||| || |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1439 TCTGTGCTACTAGTTGTCATGACTT-AGGTTCCTTTGGTTTTAGAATTACAGTTGATTGA 1497
Query 1493 TAAGAATTGCCAACAGTTCGATGTATGTACGCACCTAGGATTACTTGTGAGCTGTGAAAG 1552
|||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1498 TAAGAATTGCTAGCAATTCGATGTATGTACGCACCTAGGATTACTTGGGAGCTGTGAAAG 1557
Query 1553 AGGGAGCATGATACAACTACTGTGTATACTCATTTGCAAGATTTTGCTTTGTATATATCT 1612
|||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1558 AGGGAGAATGATACAACTACTGTGTATAATCATTTGCAAGATTTTCCTTTGTATATATCT 1617
Query 1613 TGCTGCAGTTTTTGATATCAATACCATGAGGTGATCAAttttttttttt 1661
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1618 TGCTGCAGTTTTTGATATCAATACCATGAGGTGATCATTTTTTTTTTTT 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5