BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482699
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37100.1 | Symbols: | protamine P1 family protein | chr2:15... 1256 0.0
> AT2G37100.1 | Symbols: | protamine P1 family protein | chr2:15591101-15592104
FORWARD LENGTH=1004
Length=1004
Score = 1256 bits (680), Expect = 0.0
Identities = 921/1027 (90%), Gaps = 58/1027 (6%)
Strand=Plus/Plus
Query 1 AAGAGTGGGAGTTTCAGTACCAAATAATCCTT--ACACAAAAAGAGATGAGGTTTTCTTC 58
||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 AAGAGTGAGAGTTTCAGTACCAAAAAATCCTTAGACACAAAAAGAGATGAGGTTTTCTTC 60
Query 59 ATCAAGACCCGTTTCGAGTCCGGGTCGAACCGAAAACCCGCCTCTACTCATGCGGTTCTT 118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTAGACCCGTTTCGAGTCCGGGTCGAACCGAAAACCCGCCTCTACTCATGCGGTTCTT 120
Query 119 GCGGACCAAAAGCAGAAGCAGAAGCCGTTCTCGTTCAAGAAGACCTATCTTCTTCCGTCG 178
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GCGGACCAAAAGCAGAAGCAGAAGCCGTTCTCGTTCAAGAAGACCTATCTTTTTCCGTCG 180
Query 179 GAAAAACGCTGCGGCTGCGGCGGAGACACAACAAGAACCAACTTCACCTAAAGTAACTTG 238
|||||| ||| | |||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 181 GAAAAATGCTTCTGCTGCGGCGGAG--AC-ACAAGAACCAACTTCACCTAAAGTCACTTG 237
Query 239 CATGGGTCAAGTAAGGATAAACCGATCAAAGAAACCCAAACCCGGAAGTGCTCGAGTCTC 298
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 238 CATGGGTCAAGTAAGGATAAACCGATCAAAGAAACCCAAACCCGAAACTGCTCGAGTCTC 297
Query 299 CGGAGGTGCAACGGAAAGCCGTCGCCGGAGTCGTCGGTGCGGGTGGGTGTGGGTCAAGAA 358
|||||||||||| ||||| || |||| ||| ||||||||| || ||||||||||||
Sbjct 298 CGGAGGTGCAACAGAAAGGCGACGCCAGAGCCGTCGGTGC-----GG-GTGGGTCAAGAA 351
Query 359 CGCTTTTTCCTGTCATTCTTTCACCGGAAAAATCAAACCGGCTTGCTTTAGCCCTGTGTG 418
||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 352 CGCTTTTCCCTGTCATTCTTTCACCGGAATAATCAAACCTACTTGCTTTAGCCCTGTGTG 411
Query 419 GCGTAAATGGAAATCATTTTCTCATGCTAGTTTCTCGAGAAAGTCAGAGAAGAGATCAAG 478
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 412 GCGTAAATGGAAATCATTTTCTCATGCTAGTTTCTCGAAAAAATCAGAGAAGAGATCAAG 471
Query 479 TTCGTCTAGAAGTGAACCTATCTTTGGCCGCTCCACGGTGGAGCCAGAGGAACCAGAAGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTCGTCTAGAAGTGAACCTATCTTTGGCCGCTCCACGGTGGAGCCAGAGGAACCAGAAGA 531
Query 539 GACTCGACAAGAAGAAAACCAAGAAGAAGAAGCAAGTTCATGTAAATCTTTCACAGCTAC 598
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 532 GACTCGAAAAGAAGAAAACCAAGAAGAAGAAGCAAGTTCATGTAAATCATTCACAGCTAC 591
Query 599 ACCACCGAGAAACGCTTTTTTACTAACTCGATGCAGATCTGCACCGTATAGATCTCCTTC 658
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 592 ACCACCGAGAAACGCTTTTTTACTAACTCGATGTAGATCTGCACCATATAGATCTCCTTC 651
Query 659 ATTAGCTAATAGTTTCTTTGAAGATCAAGAAGAG-CTGAAGGAAGCTCCTTTCCGACGAC 717
|| ||||||||| || |||||||||||||||||| | || |||||||||||| |||||
Sbjct 652 ATCAGCTAATAGCTTATTTGAAGATCAAGAAGAGAC-AAATAAAGCTCCTTTCCAACGAC 710
Query 718 ACGCTTCGTCGGAAAATGTTTCAGTTTC-G--GAA--G-A-AC---CG--A-AG-----A 759
||||||||||||||||||| |||||||| | ||| | | || || | || |
Sbjct 711 ACGCTTCGTCGGAAAATGTATCAGTTTCGGAAGAACCGAAGACAAGCGTTACAGAAACAA 770
Query 760 C-GAGCG-TTACA-GA---AACAACAG---CAGCGGCGAGTGAAGAACCAAAACGAAGCG 810
| ||| | ||| | || || || || |||| |||||||||||||||||||||||||
Sbjct 771 CAGAGAGATTAGAGGATTCAAGAAGAGAATCAGCAGCGAGTGAAGAACCAAAACGAAGCG 830
Query 811 TTTTGGGATCACCACGAGAGTGTCTGGTACTCACGCGCTGTAACTCGGAGCCAGCGAGAA 870
||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 831 TTTTGGGATCACCACGACAGTGTCTGATCCTCACGCGCTGTAACTCGGAGCCAGCGAGAC 890
Query 871 TCGGAGAGAAACTCGTCCCCGATATGGGTTATCGACAGAACCCAAGGTTGGGATTTACGT 930
||| | |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 891 TCG---------T--TCCC-GAGATGGGTTATCGACAGAACCCAAGGTTGGGATTTACGT 938
Query 931 GATGGGTTTACATTTTCTTTTaaaaaaaTTTGTTT-GTATTTTTTCGAGAAATTTACATT 989
|||| ||||||||||| |||| ||| ||| ||||||||||||||||||||||||
Sbjct 939 GATGCGTTTACATTTT-TTTTCTC----TTTCTTTTGTATTTTTTCGAGAAATTTACATT 993
Query 990 GAAACGA 996
|||||||
Sbjct 994 GAAACGA 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5