BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482704
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37150.3 | Symbols: | RING/U-box superfamily protein | chr2... 2617 0.0
> AT2G37150.3 | Symbols: | RING/U-box superfamily protein | chr2:15603581-15607600
REVERSE LENGTH=1967
Length=1967
Score = 2617 bits (1417), Expect = 0.0
Identities = 1677/1800 (93%), Gaps = 28/1800 (2%)
Strand=Plus/Plus
Query 142 GGTTTAATGGGGCACCGACATTTTCTTGGTTCGTCCCAATTTTTTGATGATGAACATGAT 201
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 154 GGTTTAATGGGGCACAGACATTTTCTTGGTTCATCCCAGTTTTTTGATGATGAACATGAT 213
Query 202 CAAGGCTGGAATCATACACATCCAGAACATCCATATACGAGTCTAGCAAGATCTGGGACC 261
|||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||
Sbjct 214 CAAGGCTGGAATCATACACACCCAGAACATCCATATTCGAGTCAAGCAACATCTGGGACC 273
Query 262 AGTGAGAACAGATCGCATGTATATCCAGCTGAAAACATGTTGAATGAAGGAATGCCAGTG 321
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 274 AGTGAGAACAGATCACATGTTTATCCAGCAGAAAACATGTTGAATGAAGGAATGCCAGTG 333
Query 322 TCTTCTCATTGGAACTCTTCTCCAGGACCAAATGCCTATACTGCCTCAGGTCATAGTGTG 381
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 334 TCTTCTCATTGGAACTCTTCTCCAGGACCAAATGCTTATACTGACTCAGGTCATAGTGTG 393
Query 382 GAGAGACCACACTACAATCCGGGGGCTTCGGGGCCATCCCATGATCCTTTCGTGAATTCA 441
||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 394 GAGAGACCACACTACAATCCGGGGGTTTCGGGGCCGTCCCATGATCCTTCCGTGAATTCA 453
Query 442 ACAGTTCCAACTTTCTCTGCTCCAAATGAGGATTATGTGACATTTGCATCTTCGTCGAA- 500
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||
Sbjct 454 ACAGTTCCAACTTTCTCTGCTCCACATGAGAATTATGTGACATTTGCATCTTCTTC-AAG 512
Query 501 CTGCAACAGCCAGGCCTGGACCAATGCTAGTTATGTTG---ATCAATCTATGGAAAATGT 557
|| |||||||||| | ||| | |||||||||||||||| ||||||||||||||| |||
Sbjct 513 CTACAACAGCCAGACATGGTCAAATGCTAGTTATGTTGATCATCAATCTATGGAAAGTGT 572
Query 558 GAGAGGAGCACAAAAGCGAAAACGCCCTTGTCCTTCTTCCATCTATGAAATGGGTAGTTC 617
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 573 GAGAGGAGCACAAAAGAGAAAACGACCATGTCCTTCTTCCATCTATGAAATGGGTAGTTC 632
Query 618 AAGCCAATATCACAGG-GACAAAACTCCTACAGACACCCATTTCCCCTCGGAATTTCACC 676
||||||||||||| || |||| ||||||| ||||||| ||||||||||||||||| |||
Sbjct 633 AAGCCAATATCAC-GGTGACAGAACTCCTGCAGACACTCATTTCCCCTCGGAATTGCACT 691
Query 677 TAGGAAAATCAATAACGCATGATCATGATCCTCATTACATGCCATGGCTTATGAACCCAA 736
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 692 TGGGAAAATCAATAACGCATGATCATGACCCTCATTACATGCCATGGCTTATGAACCCAA 751
Query 737 CTTACAGTAGTAATAATCTCTCGATCAGGGGAGAGAGTTCTTCAAGGAATGTCCGTAGTC 796
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 752 CTTACAGAAGTAATAATCTCTCGATCAGGGGAGAGAGCTCTTCAAGGAATGTCCGGAGTC 811
Query 797 GTTCTACACTTGATTTAGAAACCAGCTTAGGAAGAAATAATTTGCCAAGAAGCTTGAGCC 856
|| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 812 GTCCTACACTTGATTCAGAGACCAGCTTAGGTAGAAATAATTTGCCAAGAAGCTTGAGCC 871
Query 857 TTGATTCCCATTCTACACACCGCCACAGTGTTGATCATTCTGGCTCAGGTCAATTTCCTG 916
||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 872 TTGATTCTCATTCTACACACCACCACAGTGTTGATCATTATGGCTCAGGTCAATTTCCTG 931
Query 917 GTCAGACCTCTCACGGAAATAAAGACTGGAACTGTGCTAGATTGTCCTCAGTTCCTAGAG 976
||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 932 GTCAGACATCTCACGGAAATAAAGACTGGAACTGTGCTAGATTGTCCCCAGTTCTTAGAG 991
Query 977 ATACAAATGGCTTTAGTCCAGAGACAAATAATTTTCTTCCTGCGAGAAGTGTTGTCAACA 1036
||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 992 ATATAAATGGCTTTAGTCCAGAGACAAATAATTTCCTTCCTGCAAGAAGTGTTGTCAACA 1051
Query 1037 GCTTATCTGTTGATACTTCCGGC--T-ATCACCATGGGCTCACCGGAAACAGAAACCATA 1093
||||||||||| ||||||||||| | ||||||||| ||| |||||||||||||||| ||
Sbjct 1052 GCTTATCTGTTAATACTTCCGGCTATCATCACCATGAGCTTACCGGAAACAGAAACCCTA 1111
Query 1094 CAGTTTCCCACGGTTTTCCTGGAACTTCAACACAATCTACAAGCAGCAGCCGCTTCTCTC 1153
||||||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 1112 CAGTTTCCCACGGGGTTCCTGGAACTTCAACACTATCTACAAGCAGCAGCCGC-T-TCTC 1169
Query 1154 ATCATAGGTCAACACCCACCTATAGATCTTCTTCACAGGGTTCGCGATTGGGACATGTAG 1213
||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1170 -TCATAGGTCAACATCCACCTATAGATCTTCTTCACACGGTTCGCGATCGGGACATGTAG 1228
Query 1214 CATCTTCTTCTGGAGATAGGTCTCATTTGGTCACTGAGACTTATCCTTCTAGGCATCTAA 1273
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1229 CATCTTCTTCTGGAGACAGGTCTCATTTGGTCACTGAGACTTATCCGTCTAGGCATTTAA 1288
Query 1274 GGCCACCACCACACATTTCATGGCGTAGCGGTGATCGCCCAGGGAGACGCAGGAGTTCCT 1333
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1289 GGCCACCACCACACATTTCATGGCGTAGCGGTGATCGGCCAGGGAGACGCAGAAGTTCCT 1348
Query 1334 ATGAGAGGTTTCAGCCTCCTTTCGATGAAGTTTCCCTCCATGAACGGTTTTCATCTGAGG 1393
|||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 1349 ATGAGAGGTTTCAGCCTCCTTTCGATGAAGTTGCTCTCCACGAACGGTTTTCATCTGAGG 1408
Query 1394 GATTCATGGTCGTAGATCGCCAACCACACTACTACGAATCTAGAAACATGCTTGATCACC 1453
||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 1409 AATTCATGGTTGAAGATCGCCAACCACAATACTACGGATCCAGAAACATGCTTGATCACC 1468
Query 1454 ATAGAGACATGAGGCTCGACATCGATAACATGAGCTACGAGGAACTCCTTGCTCTTGGGG 1513
| |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 1469 ACAGAGACATGAGGCTTGACATCGATAACATGAGCTATGAGGAACTCCTTGATCTTGGAG 1528
Query 1514 AAAGGATTGGGAGTGTCAACACTGGTCTATCCGACAGCGCAATCTCCAGTTGCTTGTTAG 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 AAAGGATTGGGAGTGTCAACACTGGTCTATCCGACAGCGCAATCTCCAGTTGCTTGTTAG 1588
Query 1574 CAACAACATATTATCCATCGTATCAAACAGAGGACCAAAGAAAATGCGCTATTTGCCTGG 1633
|||||| ||||||||||| |||||||||||||| ||||||||||| || || |||||||
Sbjct 1589 CAACAATGTATTATCCATCATATCAAACAGAGGAGCAAAGAAAATGTGCAATCTGCCTGG 1648
Query 1634 AGGAATACAAGGAAAAAGAAGAGTTAGGGGAAGTTAAAGGGTGTGGTCATGACTACCATG 1693
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1649 AGGAGTACAAGGAAAAAGAAGAGTTAGGGGAAGTTAAGGGGTGTGGTCATGACTACCATG 1708
Query 1694 GGAGGTGCATCAAGAAATGGTTGTCTATGAAGAACTCTTGCCCTATTTGCAAATCCCCTG 1753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 GGAGGTGCATCAAGAAATGGTTGTCTATGAAGAACTCTTGCCCTATTTGCAAATCCCCTG 1768
Query 1754 CTTTACCTGATGCTTCTAAGAACTCATCATAAAATATAGAT-ATCTTTTTTGTGTGTGCA 1812
||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||| ||
Sbjct 1769 CTTTACCTGATGCTTCTAAGAACTCATCATAAATTATAGGTTATCTTTTATGTGTG--CA 1826
Query 1813 TGTTATATTATATTCATTTGTCTTTCTAAAGGaa-aaaaaTATGTGATAGAATATAACAT 1871
||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 1827 TGTTATATT-----CATTTGTCTTTCGAAAGGAAGAAAAATATGTGACAGAATATAACAT 1881
Query 1872 ATA-GTTTTCTTAGT-A--A-TAGTTGTAAATAGAAGGAAGTCCAGGATCTTTCTTAAGG 1926
|| ||||||||||| | | |||||||||||||||| ||||||||||||||||| ||||
Sbjct 1882 -TAAGTTTTCTTAGTGATTAATAGTTGTAAATAGAAGAAAGTCCAGGATCTTTCTCAAGG 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95381035500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5