BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482705
Length=2101
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37160.2 | Symbols: | Transducin/WD40 repeat-like superfami... 2684 0.0
AT3G53390.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1563 0.0
> AT2G37160.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:15608828-15612934 FORWARD LENGTH=2346
Length=2346
Score = 2684 bits (1453), Expect = 0.0
Identities = 1629/1712 (95%), Gaps = 20/1712 (1%)
Strand=Plus/Plus
Query 297 TCAGGTTACTCTAGCTCACCTTAAGGATAAACCTGCTCCATCGACACCAACTGGTACCTC 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 486 TCAGGTTACTCTAGCTCACCTTAAGGATAAACCTGCTCCATCGACACCAACTGGGACCTC 545
Query 357 CTCAAGTTACACTGCTAGTAGCGGTTTCCGGTCAGCAACAGCAAGGTTGTTGGGTGGTGG 416
||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 546 GTCAAGTTCCACAGCTAGTAGCGGTTTCCGGTCAGCAACAGCAAGGTTATTGGGTGGTGG 605
Query 417 GAATGGTAACCGTGCGCTTAGTTTTGTTGGAAGTAATGGAGGGACCAAAAATGTGGGTGC 476
||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 606 GAATGGTAACCGTGCGCTTAGTTTTGTTGGAGGTAATGGAGGGGCTAAAAATGTGGGTGC 665
Query 477 AAGTTCAAGAATTGGTGCCTCCTTCCCTGCTTCTAGTTCTAGTACCTCGGCTACTAATAC 536
||||||||| ||||| ||||| ||| ||||||||||||||| |||||| |||||||||||
Sbjct 666 AAGTTCAAGGATTGGGGCCTCATTCGCTGCTTCTAGTTCTAATACCTCAGCTACTAATAC 725
Query 537 AAATTTCGATGGGAGAGGAACTTACTTAGTCTTCAATGTGGGTGACGCTATTTTTATTAG 596
|||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 726 AAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAG 785
Query 597 TGACTTGAACTCACAAGACAAGGATCCAGTAAAGTCTATACATATCAGCAATTCGAACCC 656
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 786 TGACTTGAACTCGCAGGACAAGGATCCAGTAAAGTCTATACATATCAGCAATTCAAACCC 845
Query 657 TATGTGCCACGCATTTGATCCAGATGCTAAGGATGGACATGATCTACTTATTGGGCTGAA 716
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TATGTGCCATGCATTTCATCCAGATGCTAAGGATGGACATGATCTACTTATTGGGCTGAA 905
Query 717 TTCTGGGGATGTCTACACGGTATCACTAAGACAACAGTTGCAGGATGTTGGTAAGAAGCT 776
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 906 CTCTGGGGATGTCTACACCGTATCACTAAGACAGCAGTTGCAGGATGTTGGTAAGAAGCT 965
Query 777 TGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGCCGCTGTACTAGTAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGCCGCTGTACTAGTAT 1025
Query 837 CGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATTTGTA 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1026 AGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTA 1085
Query 897 CGTATATGAGAAGAATAAAGAAGGTGCAACTGATTCTTCATTTTCTGCTATAAGGGATCC 956
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CGTATATGAAAAGAATAAAGAAGGTGCAACTGATTCTTCATTTTCTGCTATAAGGGATCC 1145
Query 957 TACACAATTTTCAGTTGATAAAGCAAAATATAGCAAGAGTAATCCAGTAGCAAGATGGCA 1016
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1146 TACACAGTTTTCAGTTGACAAAGCAAAATATAGCAAGAGTAATCCAGTAGCGAGATGGCA 1205
Query 1017 TATTGGGCAAGGTGCGATTAATTGCATTGCATTTTCAAATGATGGAGCATACTTGGCAAC 1076
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1206 TATTGGGCAAGGTGCGATTAATAGCATTGCATTTTCAAATGATGGAGCGTACTTGGCAAC 1265
Query 1077 TGTTGGAAGAGATGGTTATCTTCGAATTTTTGATTTCTCAACCCAAAAGCTAGTGTGTGG 1136
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1266 TGTTGGAAGAGATGGTTATCTTCGAATTTTTGATTTTTCAACCCAAAAGCTAGTGTGTGG 1325
Query 1137 TGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAGTATGGATGGAAAGTACCT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAGTATGGATGGAAAGTACCT 1385
Query 1197 TTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGT 1445
Query 1257 GGCGTGGGGTGAGGGACACAATTCGTGGGTAAGTGGTGTGGCGTTTGATTCGTATTGGTC 1316
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GGCATGGGGTGAGGGACACAATTCGTGGGTAAGTGGTGTGGCGTTTGATTCGTATTGGTC 1505
Query 1317 GTCACCAAATACAGAGGGGTCTGGTGAGAATGTCATGTATCGGTTTGGTTCCGTTGGTCA 1376
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1506 GTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCA 1565
Query 1377 GGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTTCGGCG 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1566 GGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTACGGCG 1625
Query 1437 ACCTCCAGGAGGATCGCCCACTTACAGCACAGGGAGTCAATCCGCTCACTGGGACAACAT 1496
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1626 ACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGTCCGCTCACTGGGACAACAT 1685
Query 1497 TGTTCCAATGGGCACTCTTCAGCCAGCGCCGTGCATGCGCGACGTCCCAAAGCTCTCACC 1556
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1686 TGTTCCAATGGGCACTCTTCAGCCAGCGCCGTGCATGCGCGATGTCCCAAAGCTCTCACC 1745
Query 1557 AGTAGTGGCTCACCGTGTTCACACCGAGCCCCTCTCGGGCTTGATCTTCACGCAAGAATC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1746 AGTAGTGGCTCACCGTGTTCACACCGAGCCCCTCTCGGGCTTGATCTTCACCCAAGAATC 1805
Query 1617 ATTGATAACAGCTTGCAGAGAAGGCCATTTAAAGATCTGGACACGACCTGACACTCAGTC 1676
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1806 ATTGATAACAGCTTGCAGAGAAGGCCATTTAAAGATCTGGACACGACCTGACACCCAGCC 1865
Query 1677 TAGCAGC---TCAGAAGCAACAAATCCAACCACAAGCAAACCGTTGCTGACCAGCAAGGT 1733
|||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1866 CAGCAGCAGCTCAGAAGCAACAAATCCAACCACAAGCAAACCCTCGCTGACCAGCAAGGT 1925
Query 1734 CGGTAGTTCCAGTTAACTCCGTCACCATTTAAATCATATTGTTTCAGGTCTTGGTTTCGA 1793
||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1926 TGGTGGTTCCAGTTAATTCAGTCACCATTTAAATCATATTGTTTCAGGTCGTGGTTTCGA 1985
Query 1794 AAGGAATCCCTCTGAATATCTCTCCTCGGAACTGAATCTGACTCTATTGATGTGTGGGAG 1853
|||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1986 AAGGAAACCCTGTGAATATCTCTCCTCGGTACTGAATCTGACTCTATCGATGTGTGGGAG 2045
Query 1854 AG-G-CTGAGACATTTCTGGGGATTGCTGGAGACGAAAGAGATGAAAGAGACGAAGACAG 1911
|| | ||||||||||||||||||||| |||||| ||||| || || | | | || || |
Sbjct 2046 AGAGGCTGAGACATTTCTGGGGATTGATGGAGATGAAAG-GA-GATA-A-A-GA-GA--G 2097
Query 1912 TTTTC-GAATGTAATTA-GAAGAAAACAGATTTTTTGGATTT-AGGGTTTATATCCAACA 1968
||||| || |||||||| || |||||||||| |||||||||| |||||||||||||||||
Sbjct 2098 TTTTCAGA-TGTAATTAAGA-GAAAACAGATCTTTTGGATTTTAGGGTTTATATCCAACA 2155
Query 1969 AATA-CTAACCAAAAACCAATAGTTCAAGatt 1999
|| | |||||||||||| |||| |||||||||
Sbjct 2156 AA-AGCTAACCAAAAACTAATAATTCAAGATT 2186
Score = 261 bits (141), Expect = 2e-68
Identities = 180/197 (91%), Gaps = 9/197 (5%)
Strand=Plus/Plus
Query 116 AGTGACCAATTATGATGAACTCTTCGAATGGCATGATCTCTGCGCCTTCTTCTTCGT--- 172
||||| ||| |||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 209 AGTGAGCAAATATGATGAACACTTCGAATGGGATGATCTCTGGGCCTTCTTCTTCGTCAG 268
Query 173 C-T-----GCGAATCCTCAGTCTCCGGGAATCAAAACGTATTTCAAGACGCCTGAAGGGA 226
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 269 CTTCGGCGGCGAATCCTCAGTCTCCGGGAATCAAAACGTATTTCAAGACGCCTGAAGGAA 328
Query 227 AGTACAAGCTCCACTACGAGAAGACGCATCCCTCTGGGCTTCTTCACTATACTCATGGCA 286
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 329 AGTACAAGCTCCACTACGAGAAGACGCATCCCTCTGGGCTTCTTCACTACACTCATGGCA 388
Query 287 AAACCGTCACTCAGGTT 303
||||||| |||||||||
Sbjct 389 AAACCGTTACTCAGGTT 405
> AT3G53390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:19792531-19796753 FORWARD LENGTH=2252
Length=2252
Score = 1563 bits (846), Expect = 0.0
Identities = 1328/1559 (85%), Gaps = 40/1559 (3%)
Strand=Plus/Plus
Query 126 TATGATGAACTCTTCGAATGGCATGATCTCTGCG-C--CTTC-T--TCTT---CGTCTGC 176
|||||||||| |||| ||||| ||||| || ||| | |||| | |||| || | ||
Sbjct 250 TATGATGAACACTTCTAATGGAATGATATCAGCGCCATCTTCGTCGTCTTCACCGGCGGC 309
Query 177 GAATCCTCAGTCTCCGGGAATCAAAACGTATTTCAAGACGCCTGAAGGGAAGTACAAGCT 236
|||||||||||| |||||||| || || |||||||||||||||||||||||||| |||||
Sbjct 310 GAATCCTCAGTCGCCGGGAATTAAGACTTATTTCAAGACGCCTGAAGGGAAGTATAAGCT 369
Query 237 CCACTACGAGAAGACGCATCCCTCTGGGCTTCTTCACTATACTCATGGCAAAACCGTCAC 296
||||||||||| |||||| ||||||| || ||||| || | ||||||||||| || ||
Sbjct 370 TCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACATGGCAAAACTGTTAC 429
Query 297 TCAGGTTACTCTAGCTCACCTTAAGGATAA-ACCTGCTCCATCGACACCAACTGGTACCT 355
|||||| ||| ||||||| |||||||| || | ||||||| ||||| ||||||||||| |
Sbjct 430 TCAGGTAACTATAGCTCAGCTTAAGGA-AAGAGCTGCTCCTTCGACTCCAACTGGTACTT 488
Query 356 CCTCAAGTTACACTGCTAGTAGC-GGTTTCCGGTCAGCAACAGCAAGGTTGTTGGGTGGT 414
| || |||| | |||||||||| ||||| || ||||||||||| |||||| | || |
Sbjct 489 CGTCGGGTTATAGTGCTAGTAGCGGGTTT-CGTTCAGCAACAGCGAGGTTGCTAGGAACT 547
Query 415 GGGAATGGTAACCGTGCGCTTAGTTTTGTTGGAAGTAATGGAGG-GACCAAAAATGTGGG 473
|| ||||| | |||||||||||||||||||||| ||||||| || | |||| |||| |
Sbjct 548 GGAAATGGGAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGCG-GTAAAAGTGTGAG 606
Query 474 TGCAAGTTCAAGAATTGGTGCCTCCTTCCCTGCTTCTAGTTCTAGTACCTCGGCT-ACTA 532
| |||||||||||||| ||| ||||||| ||||||||| ||||| ||| || | | || |
Sbjct 607 TACAAGTTCAAGAATTAGTGGCTCCTTCGCTGCTTCTAATTCTAATACTTC-GATGACAA 665
Query 533 ATACAAATTTCGATGGGAGAGGAACTTACTTAGTCTTCAATGTGGGTGACGCTATTTTTA 592
|||| ||||| ||||||| |||||||||||| |||||||||||| |||| ||||||||||
Sbjct 666 ATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGATGCTATTTTTA 725
Query 593 T-TAGTGACTTGAACTCACAAGACAAGGATCCAGTAAAGTCTATACATATCAGCAATTCG 651
| | ||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||
Sbjct 726 TCT-GTGACTTGAACTCACAAGAAAAGGATCCAGTAAAGTCTATCCATTTCAGTAATTCA 784
Query 652 AACCCTATGTGCCACGCATTTGATCCAGATGCTAAGGATGGACATGATC-TACTTATTGG 710
||||||||||| || || |||||||| |||||||||||||| ||||| | ||||||||||
Sbjct 785 AACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGA-CTTACTTATTGG 843
Query 711 GCTGAATTCTGGGGATGTCTACACGGTATCACTAAGACAACAGTTGCAGGATGT-TGGTA 769
|||||||||||||||||| ||||| |||||||| ||||| ||||| ||||| || | ||
Sbjct 844 GCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTC-TA 902
Query 770 AGAAGCTTGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGCCGCTGTA 829
||||||| ||| |||||| |||||||||||| || |||||||| |||||||| || || |
Sbjct 903 AGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAGTCGTTGCA 962
Query 830 CTAGTATCGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAA 889
||||||| ||||||||||||||||||||||| | ||||| | ||||||||||||||| |
Sbjct 963 CTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCA 1022
Query 890 ATTTGTACGTATATGAGAAGAATAAAGAAGGTGCAACTGATTCTTCATTTTCTGCTATAA 949
||||||| || ||||||||||| ||||| ||||| ||||| || ||||| |||||||||
Sbjct 1023 ATTTGTATGTGTATGAGAAGAACAAAGATGGTGCCACTGAATCAACATTTCCTGCTATAA 1082
Query 950 GGGATCCTACACAATTTTCAGTTGATAAAGCAAAATATAGCAAGAGTAATCCAGTAGCAA 1009
| ||||||||||||||||||||||| || ||||||||||||||||||||||| || || |
Sbjct 1083 GAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCCTGTTGCGA 1142
Query 1010 GATGGCATAT-TGGGCAAGGTGCGATTAATTGCATTGCATTTTCAAATGATGGAGCATAC 1068
|||||||||| || |||||| | ||||| |||||||||| ||||||||||| ||| ||
Sbjct 1143 GATGGCATATATGT-CAAGGTTCAATTAACAGCATTGCATTCTCAAATGATGGGGCACAC 1201
Query 1069 TTGGCAACTGTTGGAAGAGATGGTTATCTTCGAATTTTTGATTTCTCAACCCAAAAGCTA 1128
||||||||||||||||||||||| |||||||| |||||||| |||| |||||| ||||||
Sbjct 1202 TTGGCAACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTTAACCCAGAAGCTA 1261
Query 1129 GTGTGTGGTGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAGTATGGATGGA 1188
|| ||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 1262 GTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTATGGATGGA 1321
Query 1189 AAGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCG- 1247
|||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1322 AAGTACATTTTGACTGGAGGTGAAGATGATTTAGTTCAAGTGTGGAGTATGGAGGATCGG 1381
Query 1248 AAAGGTTGTGGCGTGGGGTGAGGGACACAATTCGTGGGTAAGTGGTGTGGCGTTTGATTC 1307
|||| |||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1382 AAAG-TTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGTGGAGTAGCGTTTGATTC 1440
Query 1308 GTATTGGTCGTCACCAAA-TACAGAGGGGTCTGGTGAGAATGTCATGTATCGGTTTGGTT 1366
|||||||||||||||| | | || ||||| || ||| |||||||||| || ||||| |
Sbjct 1441 CAATTGGTCGTCACCAAACT-CGGATGGGTCAGGAGAGCATGTCATGTACCGTTTTGGAT 1499
Query 1367 CCGTTGGTCAGGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTC 1426
| ||||||||||||||||||||||| || |||||||| || ||||| ||||| || ||||
Sbjct 1500 CAGTTGGTCAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGTAGTTC 1559
Query 1427 CCCTTCGGCGACCTCCAGGAGGATCGCCCACTTACAGCACAGGGAGTCAATCCGCTCACT 1486
| ||| ||||| ||||||||||||| || |||||||||||||| || | || |||||||
Sbjct 1560 CACTTAGGCGAGCTCCAGGAGGATCTCCAACTTACAGCACAGGAAG-C--TCAGCTCACT 1616
Query 1487 GGGACAACATTGTTCCAATGGGCACTCTTCAGCCAGCGCCGTGCATGCGCGACGTCCCAA 1546
||||||| | | |||||||| |||||||| || || || |||| ||||| || ||||
Sbjct 1617 GGGACAATGTCATACCAATGGGAACTCTTCAACCGGCTCCTTGCAAACGCGATGTTCCAA 1676
Query 1547 AGCTCTCACC-AGT-AGTGGCTCACCGTGTTCACACCGAGCCCCTCTCGGGCTTGATCTT 1604
|||| ||||| | | | | || ||||| |||||||| ||||||||||| |||||||| ||
Sbjct 1677 AGCTGTCACCGA-TCA-TAGCACACCGAGTTCACACAGAGCCCCTCTCTGGCTTGATGTT 1734
Query 1605 CACGCAAGAATCATT-GATAACAGCTTG-CAGAGAAGGCCATTTAAAGATCTGGACACG 1661
||| ||||||||| | | || | ||||| | ||||||||||| ||||||||||||||||
Sbjct 1735 CACACAAGAATCAGTCGTTA-CGGCTTGTC-GAGAAGGCCATATAAAGATCTGGACACG 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104166130875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5