BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482713
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37210.2 | Symbols: | lysine decarboxylase family protein |... 872 0.0
AT3G53450.1 | Symbols: | Putative lysine decarboxylase family ... 793 0.0
AT2G35990.1 | Symbols: | Putative lysine decarboxylase family ... 204 2e-51
> AT2G37210.2 | Symbols: | lysine decarboxylase family protein
| chr2:15623991-15626938 REVERSE LENGTH=1086
Length=1086
Score = 872 bits (472), Expect = 0.0
Identities = 533/562 (95%), Gaps = 6/562 (1%)
Strand=Plus/Plus
Query 447 GTGGTTATGGAACACTTGAAGAATTGCTTGAAGTCATAACTTGGGCTCAGCTTGGTATAC 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GTGGTTATGGAACACTTGAAGAATTGCTTGAAGTCATAACTTGGGCTCAGCTTGGTATAC 588
Query 507 ATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCA 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCA 648
Query 567 TTGACAAAGCTGTCGAAGAAGGATTCATCAGCCCGAATGCTCGTGAGATCATCGTCTCTT 626
|||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 649 TTGACAAAGCAGTCGAAGAAGGATTTATTAGCCCGACTGCTCGTGAGATCATCGTCTCCG 708
Query 627 CACCTACTGCTAAAGAGCTGGTGAAAAAGCTAGAGGAATATGCACCTTGCCATGAAAGTG 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 709 CACCTACTGCTAAAGAGCTGGTGAAAAAGCTAGAGGAATATGCACCTTGCCATGAAAGGG 768
Query 687 TTGCAACTAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCGTCTGAAGAGTGATTAA 746
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 769 TTGCAACGAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCCTCTGAAGAGTGATTCA 828
Query 747 GATCAAGATTATCAATATAACTATTTAAAATATTTTATAATATAGATTTGAAACTTTCGA 806
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GATCAAGATTATCTATATAACTATTTAAAATATTTTATAATATAGATTTGAAACTTTCGG 888
Query 807 AGATTTCATGATTTTAATCTTACTAAAAAAGGAAGGAATAGATTTTGATTAGTTGGGTAA 866
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 889 AGATTTCATGATTT-AATCTTACTAAAAAAGGAAGGGATAGATTTTGATTAGTTGGGTAA 947
Query 867 AATTTCCACTACGGAGGAAATTCTTTTTATGTAAATTATTAGTAATGTCTTTTTAACTCG 926
|||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||| |||
Sbjct 948 AATTTCCACTTCGGAGGAGATT-TTTA-ATGTAAATTATTAGTAATGTCTTTTTAAGTCG 1005
Query 927 AAGCTAAATGTTTTTAGTTGATGTAAGTGTCGCAACTCTCT-CTATC-TACTATTGTAAC 984
||||||||||||||||||| |||||| |||||||||||||| |||| || |||||||
Sbjct 1006 AAGCTAAATGTTTTTAGTTTATGTAATTGTCGCAACTCTCTACTATTGTAAG-TTGTAAC 1064
Query 985 CAAGACAAGTTTCACACCTTCG 1006
||||||||||||||||| ||||
Sbjct 1065 CAAGACAAGTTTCACACTTTCG 1086
Score = 745 bits (403), Expect = 0.0
Identities = 432/446 (97%), Gaps = 1/446 (0%)
Strand=Plus/Plus
Query 1 ACTCGTAAAACAGTTTTAAGAAATTAGATTCTTGTGCTCAAAGAAACCTTAAACTGTTTA 60
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 12 ACTCGTAAAACTGTCTTAAGAAATTAGATTCTTGTGCTCAAAGAAACCTTAAACTGCTTA 71
Query 61 CCTTTTTCTCTTTCCAACCAAAGTTTAGAATCAAATGGAGATCAAAGGTGAAACGATGCA 120
|| |||||||||||| ||||| |||||||||| ||||| |||||||||||| |||||||
Sbjct 72 CC-TTTTCTCTTTCCGCCCAAAATTTAGAATCACATGGAAATCAAAGGTGAATCGATGCA 130
Query 121 AAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAGGCAGTCAAGGCAAGAAGAGTAG 180
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 131 AAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAAGGCAAGAAGAGCAG 190
Query 181 TTACCAAGATGCTGCTGTTGATCTCGGCAACGAACTGGTTTCAAGGAATATTGATCTAGT 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 191 TTACCAAGATGCTGCTGTTGACCTCGGCAACGAACTGGTTTCAAGGAATATTGATCTAGT 250
Query 241 CTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGATGGTGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGATGGTGG 310
Query 301 TCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAAC 370
Query 361 AGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAGCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAGCA 430
Query 421 CTCTGATGCTTTTATTGCCTTACCAG 446
||||||||||||||||||||||||||
Sbjct 431 CTCTGATGCTTTTATTGCCTTACCAG 456
> AT3G53450.1 | Symbols: | Putative lysine decarboxylase family
protein | chr3:19812977-19815430 REVERSE LENGTH=648
Length=648
Score = 793 bits (429), Expect = 0.0
Identities = 580/653 (89%), Gaps = 10/653 (2%)
Strand=Plus/Plus
Query 95 ATGGAGATCAA-AGGTGAAACGATGCAAAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTG 153
|||||| |||| | |||||| ||||||||||||||||| ||||||||||||| || ||
Sbjct 1 ATGGAGGTCAACA-ATGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTTTG 59
Query 154 TGGAGGCAGTCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTTGATCTCGGCAACGA 213
|||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 60 TGGAAGCAGCCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACGA 119
Query 214 ACTGGTTTCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTT 273
| |||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 120 ATTGGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTT 179
Query 274 GGTTTCACAAGCTGTTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCT 333
|||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||| ||
Sbjct 180 GGTTTCGCAAGCTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACT 239
Query 334 CATGCCTAGAGAGTTGACTGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCA 393
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CATGCCTAGAGAGTTGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCA 299
Query 394 CCAAAGGAAAGCTGAGATGGCTA-AGCACTCTGATGCTTTTATTGCCTTACCAGGTGGTT 452
||||| ||||| |||||||||| | |||||||||||||||||||| ||||||||||| |
Sbjct 300 TCAAAGAAAAGCAGAGATGGCTAGA-CACTCTGATGCTTTTATTGCTTTACCAGGTGGAT 358
Query 453 ATGGAACACTTGAAGAA-TTGCTTGAAG-TCATAACTTGGGCTCAGCTTGGTATACATGA 510
|||||||||||||||| || ||| || ||||||| |||||||||||||| ||||||||
Sbjct 359 ATGGAACACTTGAAGAGCTT--TTGGAGGTCATAACATGGGCTCAGCTTGGAATACATGA 416
Query 511 CAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCATTGA 570
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 417 TAAACCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTTCATTGA 476
Query 571 CAAAGCTGTCGAAGAAGGATTCATCAGCCCGAATGCTCGTGAGATCATCGTCTCTTCACC 630
||||| || |||||||| |||||||| | || || || ||||||| | ||| ||||
Sbjct 477 TAAAGCCGTTGAAGAAGGCTTCATCAGTACAAACGCACGCCAGATCATAATTTCTGCACC 536
Query 631 TACTGCTAAAGAGCTGGTGAAA-AAGCTAGAGGAATATGCACCTTGCCATGAAAGTGTTG 689
|||||| || ||||| || ||| ||||| ||||||||| | |||||||||||||||||||
Sbjct 537 TACTGCCAAGGAGCTTGT-AAAGAAGCTGGAGGAATATTCGCCTTGCCATGAAAGTGTTG 595
Query 690 CAACTAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCGTCTGAAGAGTGA 742
| |||||||||||||||||||| || ||||||| ||||| |||||||| |||
Sbjct 596 CGACTAAGCTTTGTTGGGAGATAGAGCGGATTGACTACTCTTCTGAAGACTGA 648
> AT2G35990.1 | Symbols: | Putative lysine decarboxylase family
protein | chr2:15113955-15116776 FORWARD LENGTH=886
Length=886
Score = 204 bits (110), Expect = 2e-51
Identities = 334/440 (76%), Gaps = 23/440 (5%)
Strand=Plus/Plus
Query 119 CAAAAGTCAAAG-TTCAGAAGAATCTGTGTCTTCTGTGGAGGCAG-TCAAGGCAAGAAGA 176
||||| || ||| ||||| || |||||||||||||| ||| |||| || ||||| || |
Sbjct 126 CAAAA-TC-AAGATTCAGGAGGATCTGTGTCTTCTGCGGAAGCAGTTC-CGGCAACAAAA 182
Query 177 GTAGTTACCAAGATGCTGCTGTTGATCTCGGCAACGAACTGGTTTCA-AGGAATATTGAT 235
| ||| || || |||||| | | |||| | || |||||| | | || || || |||
Sbjct 183 CCACTTATCACGACGCTGCTCTCCAACTCGCCCACCAACTGG-TGGAGAGAAACATCGAT 241
Query 236 CTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGAT 295
| || |||||||| || ||| | || | |||||| | |||| |||||||||||||||
Sbjct 242 TTGGTGTATGGAGGAGGAAGCGTGGGGCTAATGGGTCTCATTTCTCAAGCTGTTCATGAT 301
Query 296 GGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGC-CTA-GAGAGTTGACTG 353
||||||||||||||| |||| |||||||| ||| | || | || | | ||||| | || |
Sbjct 302 GGTGGTCGTCATGTTCTTGGGATCATTCCGAAGTCTCT-A-GCACCAAGAGAGATAACCG 359
Query 354 GTGAAACAGTAGGAGAAGTAAGAGCAGT-TGCAGA-TATGCACCAAAGGAAAGCTGAGAT 411
||||| || |||||||||| | | |||| | | || ||||||||||||||| ||||| ||
Sbjct 360 GTGAATCAATAGGAGAAGTTATAACAGTAT-C-GACTATGCACCAAAGGAAGGCTGAAAT 417
Query 412 GGCTAAGC-ACTCTGATGCTTTTATTGC-CTTACCAGGTGGTTATGGAACACTTGAAGAA 469
|| | || | | ||||| || || || ||| || ||||| ||||| ||| |||||||
Sbjct 418 GGGTC-GCCAAGCGGATGCCTTCATCGCACTT-CCTGGTGGATATGGGACATTTGAAGAG 475
Query 470 TTGCTTG-AAGTCATAACTTGGGCTCAGCTTGGTATACATGAC-AAGCCGGTGGGTTTGC 527
||| ||| ||||||| || ||| |||||||||| || || || || |||||||| |
Sbjct 476 TTG-TTGGAAGTCATCACCTGGTCTCAGCTTGGGATTCAC-ACTAAACCGGTGGGACTAT 533
Query 528 TCAATGTTGATGGATACTAC 547
| || || ||||||| ||||
Sbjct 534 TGAACGTGGATGGATTCTAC 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5