BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482714
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1890 0.0
> AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634525-15636409 REVERSE LENGTH=1316
Length=1316
Score = 1890 bits (1023), Expect = 0.0
Identities = 1178/1250 (94%), Gaps = 21/1250 (2%)
Strand=Plus/Plus
Query 45 TCTTCCCATGGCTGCTTCAGCTTCTTCTCTCGCTCTCTCTTCCTTCAACCCTAAATCTCT 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 72 TCTTCCCATGGCTGCTTCAGCTTCGTCTCTCGCTCTCTCTTCCTTCAACCCTAAATCTCT 131
Query 105 TCCTTTCTGCGTCTCCAGACCAGCCTCCGTTTCCCTCTTACCTCCTTCCCTCTCCTTTAA 164
||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 132 TCCTTTCGGCGTCTCCAGACCTGCCTCCGTTTCCCTCTTATCTCCTTCCCTCTCCTTTAA 191
Query 165 ACTCAATTCCGACTCCGTTTCCTTCTCCATCGCCGGCAAATGGAACTCTCCCGCTTCTCG 224
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 192 ACTCAATTCCGACTCCGTTTCCTTCTCCATCGCCGCCAAATGGAACTCTCCCGCTTCTCG 251
Query 225 CTTCGTCCGTAACGTTGCAATCACCTCAGAGTTCGAGGTGGAAGAAGACGGTTGCGCTGA 284
||||| |||||||||||| || |||||||||||||||||||||||||| |||| ||||||
Sbjct 252 CTTCGCCCGTAACGTTGCGATTACCTCAGAGTTCGAGGTGGAAGAAGATGGTTTCGCTGA 311
Query 285 TGACGCAGCGCCACAAGAGCAATCTTTCTCTGCTGACCTCAAACTCTTCGTTGGTAACCT 344
| ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 312 CGTCGCTCCGCCAAAAGAGCAATCTTTCTCTGCTGACCTTAAACTCTTCGTTGGTAACCT 371
Query 345 TCCCTTCAACGTTGACAGTGCTCAGCTCGCTCAGCTCTTTGAGAGTGCCGGAAATGTTGA 404
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TCCTTTCAACGTTGACAGTGCTCAGCTCGCTCAGCTCTTTGAGAGTGCCGGAAATGTTGA 431
Query 405 GATGGTTGAGGTAATCTATGACAAAGTGACAGGAAGAAGCAGAGGTTTTGGATTCGTGAC 464
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 432 GATGGTTGAGGTAATCTATGACAAAATTACAGGAAGAAGCAGAGGTTTTGGATTCGTGAC 491
Query 465 TATGTCTTCAGTTTCTGAAGTTGAGGCAGCTGCTAATCAGTTCAATGGCTATGAGTTGGA 524
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 492 TATGTCTTCAGTTTCTGAAGTTGAGGCAGCTGCTCAGCAGTTCAATGGCTATGAGTTGGA 551
Query 525 TGGTAGACCTTTGAGAGTTAATGCTGGTCCTCCTCCACCAAAGAGGGAAGATGGTTTCTC 584
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 552 TGGTAGACCTTTGAGAGTCAATGCTGGTCCCCCACCACCAAAGAGGGAAGATGGTTTCTC 611
Query 585 CAGAGGACCTAGAAGCAGCTTTGGAAGCTCAGGTTCTGGATATGGAGGAGGTGGTGGTTC 644
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CAGAGGACCTAGGAGCAGCTTTGGAAGCTCAGGTTCTGGATATGGAGGAGGTGGTGGTTC 671
Query 645 TGGTGCTGGTTCAGGAAACCGGGTTTATGTTGGCAACCTTTCTTGGGGAGTTGATGACAT 704
||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct 672 TGGTGCTGGTTCAGGAAACCGTGTTTATGTGGGTAACCTCTCTTGGGGAGTTGATGACAT 731
Query 705 GGCTCTTGAGTGTTTGTTCGCGGAGCAAGGAAAAGTTGTTGAGGCTAGAGTCATCTACGA 764
|||||||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 732 GGCTCTTGAGAGTTTGTTCTCGGAGCAAGGAAAGGTTGTTGAGGCCAGAGTCATCTACGA 791
Query 765 CAGAGACAGCGGGCGATCCAAGGGTTTTGGGTTTGTGACTTAC-AGCTCTTCTAAAGAGG 823
||| ||||| || ||||||||||||||||| |||||||| ||| | ||||||| ||||||
Sbjct 792 CAGGGACAGTGGTCGATCCAAGGGTTTTGGATTTGTGACATACGA-CTCTTCTCAAGAGG 850
Query 824 TCCAAAATGCCATCAATTCCTTGAATGGTGCTGATTTGGACGGCAGACAAATTAGAGTCT 883
|||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 851 TCCAAAATGCCATCAAGTCCTTGGATGGTGCTGATTTGGACGGTAGACAAATTAGAGTCT 910
Query 884 CGGAAGCTGAGGCTAGGCCTCCAAGGCGCCAATTTTGAGCACCAATCTATGACTTCCTAT 943
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 911 CGGAAGCTGAGGCTAGGCCTCCAAGGCGCCAATATTGAGCACCAATCTATGACTTCCTAT 970
Query 944 TCTCAAAAACGCATATTCTTGAGGGCGCTTCGAAGCAAAGAGGGTTTGTGAGATGATGGC 1003
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 971 TCTCAAAAACGCATATTCTGGAGGGCGCTTCGAAGTAAAGAGGGTTTGTGAGATGATGGC 1030
Query 1004 AGTTTCAGACGGTACTAAGCTCTTAGCTTCGCCTATGTTTGTTGCCTTTGGATGCACGAA 1063
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1031 AGTTTCAGACGGTACTAAGCTCTTAGCTTCGCCTATGTTTGTTGCCTT-GGATGCAAGAA 1089
Query 1064 GGTCGTAAAGGAATGGTCtttttttttttGGGAAACGTATAATTAAGATA-AAAGCAG-A 1121
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | | |
Sbjct 1090 GGTCGTAAAGGAATGGTCTTTTTTTTTTTGAGAAACGTATAATTAAGATAGAAA-CTGGA 1148
Query 1122 GAAGACCATGTTCTTGTCTGTCTGATTGCTGCCATTGACTGCTTCGCTTTGGTTT-GATT 1180
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1149 GA-GACCATGTTCTTGTCTGTCTGAATGCTGCCATTGACTGCTTCGCTTTGGTTTTGATT 1207
Query 1181 CAAtttttttt-CTCTCTATTTCGTGGTCT-T-CAT---AATGCTTCTCTGTTTATTTGA 1234
||||||||||| |||||||| ||||||||| | | | |||||||||||||||||||||
Sbjct 1208 CAATTTTTTTTTCTCTCTATATCGTGGTCTCTTCTTCCTAATGCTTCTCTGTTTATTTGA 1267
Query 1235 TCCTCTGCTCAAATGAATGAATATGATGAACACACTTGAAAACCGGTTAA 1284
|||||||||||||||||| | | || | ||||||||||||||||||||
Sbjct 1268 TCCTCTGCTCAAATGAAT-A-T--GA--A-CACACTTGAAAACCGGTTAA 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5