BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482717
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37250.1 | Symbols: ADK, ATPADK1 | adenosine kinase | chr2:1... 1932 0.0
> AT2G37250.1 | Symbols: ADK, ATPADK1 | adenosine kinase | chr2:15641906-15643786
FORWARD LENGTH=1408
Length=1408
Score = 1932 bits (1046), Expect = 0.0
Identities = 1296/1413 (92%), Gaps = 32/1413 (2%)
Strand=Plus/Plus
Query 1 ATGGTCGGGCACGTTCTTGTTTAGGGTAAAGCTCAAAGCTCAAGCCGCTTCTATCTCTCT 60
||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 10 ATGTTCGTGCACGTTCTTGTTTAGGGT-AAGCTCAAAGCTCAAGCCGCTTCTATCTCTCT 68
Query 61 ACATTTCTCTTTCTGCAATGGCGAGAATAGTGCGTGTGGCTAGATCCTCCTCCTTCTTTG 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 69 ACATTTCTCTTTCTGCAATGGCGAGATTAGTGCGTGTGGCTAGATCCTCCTCCCTCTTTG 128
Query 121 GCTATGGAAACCGTTTCTACTCCACCTCCGCCGAAGCTAGCCACGCGTCGTCTCCTTCGC 180
||| ||| |||||||||||||| || || ||||||||||||||||||||||| |||||||
Sbjct 129 GCTTTGGTAACCGTTTCTACTCTACTTCAGCCGAAGCTAGCCACGCGTCGTCGCCTTCGC 188
Query 181 CGTTTCTTCACGGCGCCGGAGCTCGCAGGGATGTTGCC-AAGGATAGGAATGTCCAGTGG 239
||||||||||||||| ||||||| |||||| || | || || ||||| ||||| ||||||
Sbjct 189 CGTTTCTTCACGGCGGCGGAGCTAGCAGGGTTGCT-CCGAAAGATAGAAATGTTCAGTGG 247
Query 240 GTGTTTTTGGGGTGTCCTGGTGTCGGAAAAGGAACTTACGCTAGTAGACTGTCGACCCTT 299
||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 248 GTGTTTTTGGGATGTCCTGGTGTTGGAAAAGGAACTTACGCTAGTAGACTATCAACCCTT 307
Query 300 CTCGGCGTTCCTCATATCGCCACCGGCGATCTCGTCCGTGAAGAGCTTGCTTCGTCTGGA 359
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 308 CTCGGCGTTCCTCACATCGCCACCGGCGATCTCGTCCGTGAAGAGCTTGCATCTTCTGGA 367
Query 360 CCTCTCTCTCAAAAGCTATCGGAGATTGTAAACCAGGGAAAATTGGTTTCTGATGAGATT 419
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 368 CCTCTCTCTCAAAAGCTATCGGAGATTGTAAATCAGGGAAAATTGGTTTCTGATGAGATC 427
Query 420 ATAGTAGACCTATTGTCCAAGAGACTTGAGGCTGGTGAAGCCAAAGGTGAATCAGGGTTT 479
|| |||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 428 ATTGTAGACTTATTGTCCAAAAGACTTGAGGCTGGTGAAGCTAGAGGTGAATCAGGGTTT 487
Query 480 ATTCTTGATGGCTTTCCTCGTACCATGAGACAAGCTGAAATACTGGGAGATGTAACCGAC 539
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 488 ATCCTTGATGGCTTTCCTCGTACCATGAGACAAGCTGAAATACTGGGAGATGTAACTGAC 547
Query 540 ATCGATTTGGTAGTGAATTTGAAGCTACCTGAGGAAGTTTTGGTTGACAAATGCCTCGGG 599
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 548 ATCGATTTGGTGGTGAATTTGAAGCTTCCTGAGGAAGTTTTGGTTGACAAATGCCTTGGA 607
Query 600 AGGAGAACTTGTAGCCAATGTGGTAAGGGTTTCAATATTGCTCACATCAACTTAAAGGGT 659
|||||||| ||||| |||||||| |||||||| ||| | |||||||||||||||||||||
Sbjct 608 AGGAGAACATGTAGTCAATGTGGCAAGGGTTTTAATGTAGCTCACATCAACTTAAAGGGT 667
Query 660 GAGAATGGAAAACCTGGAATTAGCATGGATCCACTTCTCCCTCCACCTCACTGCATGTCA 719
|||||||||| |||||||||||| |||||||||||||||||||||| ||| || ||||||
Sbjct 668 GAGAATGGAAGACCTGGAATTAGTATGGATCCACTTCTCCCTCCACATCAATGTATGTCA 727
Query 720 AAGCTCATCACTCGAGCTGACGATACTGAAGAGGTGGTGAAAGCAAGGCTTCGTATATAC 779
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 728 AAGCTTGTCACTCGAGCTGATGATACTGAAGAGGTGGTGAAAGCAAGGCTTCGTATATAC 787
Query 780 AATGAAACGAGCCAACCTCTTGAAGAATACTACCGTAGCAAGGGAAAGCTTATGGAGTTT 839
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 788 AATGAAACGAGCCAGCCTCTTGAAGAATACTACCGTACCAAGGGAAAGCTTATGGAGTTT 847
Query 840 GACTTACCTGGAGGCATCCCAGAGTCATGGCCAAGGCTACTGGAAGCTTTAAGGCTTGAC 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 848 GACTTACCTGGAGGCATCCCAGAGTCATGGCCAAGGCTATTGGAAGCTTTAAGGCTTGAC 907
Query 900 GATTACGAAGAGAAGCAGTCTG-CTGTGGCATA-GTTCACAAGCAAATCCCGGTATTTAA 957
|||||||| ||||| ||||||| | | ||||| |||||| | |||||||||||||||||
Sbjct 908 GATTACGAGGAGAAACAGTCTGTC-GCAGCATAAGTTCACTATCAAATCCCGGTATTTAA 966
Query 958 A-TTCTTTGCATGTGGAAGACATATGCCTAATCAATTTTGTGTTGGAAATAAAAGTAAAG 1016
| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 967 AATTCTTTGCATGTGGAATACATATGCGTAATCAATTTTGTGTTGGAAATAAAAGTAAA- 1025
Query 1017 aaaaaaaCCTTAGATTGTTTT-CACCTCAATAGAAATAATCATACACACTTGC--AAACT 1073
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1026 AAGAAAACCTTAGATTGTTTTTCACCTCAATAGAAATAATCATACACACTTGCGCAAACT 1085
Query 1074 ATTATTTTTCCATGAGCCGAGACCGAGGTTTCGGCTCCGTAAGAGAAATATGCTGTATCA 1133
|||||||||||| ||||| | || ||| |||||| | ||||||||||| |||||||
Sbjct 1086 ATTATTTTTCCACCAGCCGGG---GAT-TTT-GGCTCCATGAGAGAAATATGATGTATCA 1140
Query 1134 TGATGGTTTGAGTTTGCTAGCGAGCAGTGACATTACAGGAATGTATGAATACTTCTACAC 1193
|||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1141 TGATTGTTTGAGATTGCTAG-------TGACATTACAGGAATGTATCAATACTTCTACAC 1193
Query 1194 TACTTGATATGCATTGGGTTTGATCTTTATGCTCTTGTGATATATTTGTT--GGAGAAT- 1250
||||| ||||||||| |||| ||| ||||||||||||||||| ||| || ||| |||
Sbjct 1194 CACTTGTTATGCATTGAGTTTAATCGTTATGCTCTTGTGATATGTTTTTTTTGGAAAATG 1253
Query 1251 --ATGA-TGA--A-ATTGCGGCTGGCCGAGCTGGCTGGTTAAAGAACTCTACCAGACAGT 1304
|||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1254 TGATGAATGATGATATTGCGGCTGGCCGAGCTGGCTGGTTAAAGAACTCAACCAGACAGT 1313
Query 1305 AAAGTAAAACAGCCGCATAGATTAAATGGGAACTTATAACCAGCTCTTGACTGTCCTAGA 1364
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1314 AAAGTAAAACAGCCGCATAGATTAAACGGGAACTTATAACCAGCTCTTGACTGTCCTAGC 1373
Query 1365 ATTGGCGGTGCGGGATAGAATTGTTCCTTACAT 1397
||||||||||||||||||||| |||||||||||
Sbjct 1374 ATTGGCGGTGCGGGATAGAATCGTTCCTTACAT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5