BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482718
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37260.1 | Symbols: TTG2, ATWRKY44, WRKY44, DSL1 | WRKY fami... 2178 0.0
> AT2G37260.1 | Symbols: TTG2, ATWRKY44, WRKY44, DSL1 | WRKY family
transcription factor family protein | chr2:15644840-15647065
FORWARD LENGTH=1816
Length=1816
Score = 2178 bits (1179), Expect = 0.0
Identities = 1414/1523 (93%), Gaps = 33/1523 (2%)
Strand=Plus/Plus
Query 1 CATCCAACGTTCCCTATAGTGACACGTGTATTCATTACAGTGTCGGCCAAACTCCAAAGC 60
|||||||||||||||||| |||||||||||| ||| |||||||||| || |||||
Sbjct 17 CATCCAACGTTCCCTATACTGACACGTGTATCCATCACAGTGTCGG-----CT--AAAGC 69
Query 61 TCAACGAACTCATACGAAGGGATACATCATCATCGCTCAATAATCACTAACCGGATCCGG 120
|||| |||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 70 TCAAGGAACTCATACCAAGAAATACATCATCATCTCTCAATAATCACAAACCGGATCCGG 129
Query 121 AT-AAGTTCGGATCCATCAGATTTTCTTCGTT-CCTAACTCCTAAAAA-G-GA-A-TC-- 172
|| || || ||||||||||||||||||||||| ||||||||||||||| | || | ||
Sbjct 130 ATCAA-TTTGGATCCATCAGATTTTCTTCGTTCCCTAACTCCTAAAAAGGAGAGATTCTT 188
Query 173 C---T--TT-TCACAACTTCAGTTTTTGCATTCA-C--CGTGAGTGTTCTACTTTTGGTC 223
| | || |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 189 CAAATCCTTATCACAACTTCAGTTTTTGCATTCACCGTCGTGAGTGTTCTACTTTTGGTC 248
Query 224 AAGTAATGGAGGTGAAGGATGGTGAAAGAGTGGTAATAGCAAAACCGGTGGCCTCAAGGC 283
|||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 249 AAGTAATGGAGGTGAATGATGGTGAAAGAGTGGTAATAGCAAAACCAGTTGCCTCAAGAC 308
Query 284 CTTCTTCAAGCCCTAGCTTCAGGACATTCACTGAGCTTCTCACTGATTCAGTTACTGTAT 343
|||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 309 CTTCTTCAAGTTCTGGCTTCAGGACATTCACTGAGCTTCTTACTGATTCAGTTACCGTAT 368
Query 344 CTCCCCAATCGAATTGTCACGCGATTGTAGACGCTGCTATAAGACCAAAGACTTTGAGGT 403
|||| ||| ||| ||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct 369 CTCCGCAAACGACTTGCCACGAGATTGTAGACGCTGCTATAAGACCAAAGACTTTGAGAT 428
Query 404 TCAACCAGCCAGTTGCAGCTTCGGTCTCATGTCCACGGGCTGAAGGAAATGGTATTGGAA 463
|||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 429 TCAATCAGCCAGTAGCAGCTTCGGTCTCATGTCCACGGGCTGAAGTAAAAGGTATTGGAA 488
Query 464 ATGAAAAGTC-T-TG-TGATGATTCAGATAGCAGAAACTATGTCGTTTATAAACCAAAAG 520
||| || ||| | || |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 489 ATGGAATGTCTTGTGATGATGATTCAGATAGCAGAAACTACGTCGTTTATAAACCGAAAG 548
Query 521 CAAAGCTTGTCTCCAAAGCAACTGTCTCTGCATTGGCTAATATGCTTCAGGGGAATCGGC 580
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 549 CAAAGCTTGTCTCCAAAGCAACCGTCTCTGCATTGGCTAATATGCTTCAGGGGAATCGTC 608
Query 581 AACAGACTTGGAGACAAACCGAAACAGTATCCTATGGGAAGAGTGTGAGCCAAGGTACAC 640
|||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 609 AACAAACTTGGAGACAAAGCGAAGCAGTATCCTATGGGAAGAGTGTGAGCCAAGGTACAC 668
Query 641 ATCGAGCGGGTCCTAATCTAGTCCAGAAAGTTCCATCCTTTACGGAATCAGAGACATCTA 700
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 669 ATCGAGCAGGTCCTAATCTAGTCCAGAAAGTTCCATCTTTTACGGAATCAGAGACATCTA 728
Query 701 TTGGTGACAGATCTTCAGTGGACGGATACAACTGGAGGAAATACGGACAGAAGCAAGTTA 760
||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 729 CTGGGGATAGATCTTCTGTGGATGGATACAACTGGAGGAAATACGGACAGAAGCAAGTTA 788
Query 761 AAGGAAGTGAGTGTCCAAGAAGTTACTACAAATGCACACACCCAAAATGTCCAGTGAAGA 820
||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct 789 AAGGAAGTGAGTGTCCAAGGAGTTATTACAAATGCACACACCCGAAATGTCCGGTGAAGA 848
Query 821 AGAAAGTAGAGAGATCAGTGGAAGGTCAAGTATCAGAGATTGTGTATCAAGGTGAACATA 880
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 849 AGAAAGTAGAGAGATCAGTGGAAGGTCAAGTTTCAGAGATTGTGTATCAAGGTGAACATA 908
Query 881 ATCATTCAAAGCCTTCTTGTCCACTTCCACGGCGCGCTTCGTCATCAATCTCTTCAGGGT 940
|||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 909 ATCACTCAAAGCCATCTTGTCCTCTTCCACGGCGTGCTTCATCATCAATCTCTTCAGGGT 968
Query 941 TTCAGAAACCACCAAAAGGGATTGCTTCTGAAGGATCAATGGGACAAGACTCTAACAATA 1000
|||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 969 TTCAAAAACCACCAAAATCGATTGCTTCTGAAGGATCAATGGGACAAGACCCTAACAATA 1028
Query 1001 ATCTCTATTCTCCTCTTTGGAACAATCAAGGCAATGACTCTACTAAAAACAGAACAGAAA 1060
|||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
Sbjct 1029 ATCTCTATTCTCCTCTATGGAACAATCAAAGCAATGACTCTACTCAAAACAGAACAGAGA 1088
Query 1061 AGATGAATGAGGGATGTGTTATAACACCATTCGAGTTTGCTGTTCCAAGATCAACAAATT 1120
|||||| ||| || |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1089 AGATGAGTGAAGGTTGTGTTATTACACCATTTGAGTTTGCTGTTCCAAGATCGACAAATT 1148
Query 1121 CAAATCCCGGAACTTCGGATTCC-G--GCAAGAGTAGCCAATGTGATGAAGGAGAGCTTG 1177
|||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 1149 CAAATCCCGGAACTTCAGATTCCGGTTGCAAGAGTAGCCAATGTGATGAAGGAGAGCTTG 1208
Query 1178 ATGATCAAAGCAGAAGCAAAAGAAGGAAGAACGAGAAGCAATCTAGTGAAGCAGGAGTAT 1237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 ATGATCCAAGCAGAAGCAAAAGAAGGAAGAACGAGAAGCAATCTAGTGAAGCAGGAGTAT 1268
Query 1238 CGCAAGGCTCAGTGGAATCAGACAGTCTTGAAGATGGATTCAGGTGGAGAAAGTATGGAC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CGCAAGGCTCAGTGGAATCAGACAGTCTTGAAGATGGATTCAGGTGGAGAAAGTATGGAC 1328
Query 1298 AAAAAGTGGTCGGAGGCAATGCGTATCCAAGAAGTTATTACAGATGCACAAGTGCTAATT 1357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AAAAAGTGGTAGGAGGCAATGCGTATCCAAGAAGTTATTACAGATGCACAAGTGCTAATT 1388
Query 1358 GCAGAGCAAGGAAACATGTTGAGA-GAGCGAGTGATGATCCAAGAGCTTTCATTACAACC 1416
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1389 GCAGAGCAAGGAAACATGTTGA-ACGAGCGAGTGATGATCCAAGAGCTTTCATTACAACC 1447
Query 1417 TACGAGGGTAAACATAATCATCATTTGCTCTTGAGCCCTCCAACTTCCTCTGCTCTTCCC 1476
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1448 TACGAGGGTAAACATAATCATCATTTGCTCTTGAGCCCTCCATCTTCCTCTACTCTTCCC 1507
Query 1477 TTTAACTCACCACAGCTTTCTAA 1499
|||||||| ||||| ||||||||
Sbjct 1508 TTTAACTCCCCACAACTTTCTAA 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5