BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482719
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37270.1 | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B | ... 1356 0.0
AT3G11940.1 | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein... 747 0.0
> AT2G37270.1 | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B
| chr2:15647677-15649221 REVERSE LENGTH=930
Length=930
Score = 1356 bits (734), Expect = 0.0
Identities = 843/894 (94%), Gaps = 13/894 (1%)
Strand=Plus/Plus
Query 4 TGAGCTTCCTCCTCTTCTTCTTCTTCAAGCCGCAGCCAAAGATCCCTACTT-TGCT--A- 59
|||||||||| |||||||||||||||||||||| || |||||||||||||| | || |
Sbjct 24 TGAGCTTCCTTCTCTTCTTCTTCTTCAAGCCGCGGCTAAAGATCCCTACTTCT-CTCGAC 82
Query 60 ATCTTCTACTGATCCTCCAGTCATGGCCACCTCCGTAGAAATCGACGCCGAGATTCAGCA 119
| ||| || || | ||||||||||| |||||| |||||||||||| |||||||| ||
Sbjct 83 A-CTTATA--GA-GTTTCAGTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACA 138
Query 120 ACAGCTTACCAATGAGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGGCTAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 139 GCAGCTTACCAATGAGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGGTTAC 198
Query 180 TCATATTAGTCTTGTGGACTACATTGGTGTTCAGCCAGCGAAGCACGCAACTTTTGTTCC 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 199 GGATATTAGTCTTGTGGACTACATTGGTGTTCAGCCATCGAAGCACGCAACTTTTGTTCC 258
Query 240 TCACACTGCTGGGA-GATACTCTGTGAAGAGGTTCAGAAAGGCTCAATGCCCAATTGTTG 298
|| |||||| ||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 259 CCATACTGCT-GGACGATACTCTGTGAAGAGGTTCAGAAAGGCGCAGTGCCCAATTGTTG 317
Query 299 AGAGGCTCACTAACTCTCTCATGATGCACGGAAGGAACAACGGTAAGAAGTTGATGGCTG 358
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 318 AGAGGCTCACTAACTCTCTCATGATGCACGGAAGAAACAATGGTAAGAAGTTGATGGCTG 377
Query 359 TCAGGATCGTCAAGCATGCCATGGAGATCATCCACCTCTTGTCTGACTTGAACCCAATTC 418
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 378 TCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTC 437
Query 419 AAGTTATCATTGATGCCATTGTTAACAGTGGTCCTCGTGAAGATGCTACAAGGATTGGAT 478
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 438 AAGTTATCATTGATGCCATTGTTAACAGTGGTCCACGTGAAGATGCTACCAGGATTGGAT 497
Query 479 CTGCTGGTGTGGTTAGGAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CTGCTGGTGTGGTTAGGAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAG 557
Query 539 CAATCTTCTTGCTCACCACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCG 598
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CGATCTTCTTGCTTACAACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCG 617
Query 599 CTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCA 677
Query 659 TCAAGAAGAAAGATGAGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTTTCTTT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 678 TCAAGAAGAAAGATGAGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTCCCTTT 737
Query 719 CCTCTAAGTTTGCATTATATCAAAAGAGTTTTTGTGTTGTTTCCATTAGCTTTGGATATG 778
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 738 CCTCTAAGTTTGCATTATATCAAA-GAGTTTTTGTGTTGTTTCCATTAGCTTTGGATATG 796
Query 779 TTTCAGATGATCTCTCTATCTTTAATGAAGTTTTGACGCTTTTAAACGACTTGGGATCTT 838
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 797 TTTCAGATGATCTCTCTATCTTTAATGAAATTTTGACGCTTATAATCGACTTGGGATCTT 856
Query 839 GATCAATGAAATGGTTTCATATTTAAAGTTATTTCATCTATATATGTTTCAGTT 892
||||| | ||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 857 GATCA-TCAAACGGTTTCATATTTAAAATTATTTCATCTATATATTTTTCAGTT 909
> AT3G11940.1 | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein
5A | chr3:3777895-3779467 REVERSE LENGTH=1017
Length=1017
Score = 747 bits (404), Expect = 0.0
Identities = 564/642 (88%), Gaps = 8/642 (1%)
Strand=Plus/Plus
Query 77 CAGTCATGGCCACCTCCGTAGAAATCGACGCCGAGATTCAGCA-ACAGCTTACCAATGAG 135
||| |||||||||| ||| ||| | ||||| ||||||||||| | ||| || || ||
Sbjct 109 CAGCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGC-GCTCACTAACGAA 167
Query 136 GTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGGCT-ACTCATATTAGTCTTGT 194
|| |||||||||||||| |||| || ||| |||||| ||| | || | || ||||||||
Sbjct 168 GTCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGG-TCACAGACATCAGTCTTGT 226
Query 195 GGACTACATTGGTGTTCAGCCAGCGAAGCACGCAACTTTTGTTCCTCACACTGCTGGGAG 254
||||||||||| |||||| |||| || || || || |||||||| ||||| ||||| ||
Sbjct 227 TGACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAAG 286
Query 255 ATACTCTGTGAAGAGGTTCAGAAAGGCTCAATGCCCAATTGTTGAGAGGCTCACTAACTC 314
||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 287 ATACTCTGTGAAGAGATTCAGGAAGGCTCAGTGCCCCATTGTTGAGAGGCTCACCAACTC 346
Query 315 TCTCATGATGCACGGAAGGAACAACGGTAAGAAGTTGATGGCTGTCAGGATCGTCAAGCA 374
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 347 TCTCATGATGCACGGGAGGAACAACGGTAAGAAATTGATGGCTGTCAGGATCGTCAAGCA 406
Query 375 TGCCATGGAGATCATCCACCTCTTGTCTGACTTGAACCCAATTCAAGTTATCATTGATGC 434
||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 407 CGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATTCAGGTCATCATTGACGC 466
Query 435 CATTGTTAACAGTGGTCCTCGTGAAGATGCTACAAGGATTGGATCTGCTGGTGTGGTTAG 494
|||||| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||
Sbjct 467 CATTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTAG 526
Query 495 GAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAGCAATCTTCTTGCTCAC 554
||| || ||||||||||||||||||||||||||||| ||||| || ||||||||| | ||
Sbjct 527 GAGACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAGGCTATCTTCTTGATTAC 586
Query 555 CACTGGTGCACGTGAAGCTGCCTTT-AGAAACATCAAGACAATCGCTGAGTGCCTTGCTG 613
||||||||| ||||||||||| ||| |||||||||||||| || ||||||||||||||||
Sbjct 587 CACTGGTGCTCGTGAAGCTGC-TTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTG 645
Query 614 ATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCATCAAGAAGAAAGATG 673
||||| | ||||| || || ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 646 ATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGATG 705
Query 674 AGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTTTC 715
||||||| |||||||| ||||| ||||||||||| || ||||
Sbjct 706 AGATTGAAAGAGTTGCCAAGGCTAATCGTTAAGG-AT-TTTC 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5