BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482721
Length=2762
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37290.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 1967 0.0
> AT2G37290.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr2:15656714-15661685 REVERSE LENGTH=3322
Length=3322
Score = 1967 bits (1065), Expect = 0.0
Identities = 1150/1192 (96%), Gaps = 2/1192 (0%)
Strand=Plus/Plus
Query 1396 GTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGACCATGGTTCCTA 1455
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1851 GTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTA 1910
Query 1456 TCTATTTTTGTGAACATTATTCCTTGGGAATGCGTTCTGCGGATGTGGGATGTGCTTCTC 1515
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 TCTATTTTTGTCAACATTATTCCTTGGGAATGCGTTCTGCGGATGTGGGATGTGCTTCTC 1970
Query 1516 TTTGAAGGAAACCGTGTAGTGTTGTTCCGAACAGCATTTGCTATAATGGAACTATATGGT 1575
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1971 TTTGAAGGAAACCGTGTAGTGTTGTTCAGAACAGCATTTGCTATAATGGAACTATATGGT 2030
Query 1576 CCTGCAATTGTTGCCACAAAAGATGCAGGAGATGCTATTACTTCGCTACAAAGTCTTGCT 1635
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2031 CCTGCAATTGTTGCAACAAAAGATGCAGGAGATGCTATTACTTCACTACAAAGTCTTGCT 2090
Query 1636 AGTTCAACATTTGATAGTAGTCAACTTGTTTTGACCGCATGCATGGGTTATATATCGACA 1695
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2091 AGTTCAACATTTGATAGTAGTCAACTTGTTTTGACTGCATGCATGGGTTATATATCGACA 2150
Query 1696 AATGAAGCTAGACTAGAGGAGCTGAGGAAAATACATAGACCGGCGGTACTAGAGATTGTC 1755
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2151 AATGAAGCTAGACTAGAGGAGCTGAGGAAAATACATAGACCCGCGGTACTAGAGATTGTC 2210
Query 1756 GAGGAAAGAATACAAAAAGGTCGAGTCTGGAAGGATAAAAAAGGATTGGCTTCTAAGTTA 1815
|||||| |||||||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 2211 GAGGAACGAATACAAAAGGGTCGAGTATGGAAGGACAAAAAGGGATTGGCTTCTAAGTTA 2270
Query 1816 TATAGCTTTAAACATGAAGGCTCTATCTTAGATCATGAACAAAAGTCTACTCAAAGAAAT 1875
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2271 TATAGCTTTAAACATGAAGGTTCTATCTTAGATCATGAACAAAAGTCTACTCAAAGGAAT 2330
Query 1876 GATGGTGAGGATCCAGATGATGATGATGAATCTTGTTCGCCTTCTCTGAATCTGGATGGT 1935
||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2331 GATGGTGAGAATCAAGATGATGATGATGAATCTTGTTCGCCTTTTCTGAATCTTGATGGT 2390
Query 1936 GCTAATGTTGATTCTGAAGTAGATTCTTTACCAGATCTTCAAGAGCAGGTGGTATGGATG 1995
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2391 GCAAATGTTGATTCCGAAGTAGATTCTTTACCAGATCTTCAAGAACAGGTGGTATGGATG 2450
Query 1996 AAGGTTGAACTATGTAGATTGTTGGAGGAGAAAAGATCAGCTGTAATGAGAGCTGAGGAG 2055
|||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 2451 AAGGTTGAACTATGCAGACTGTTGGAGGAGAAAAGATCAGCGGTGATGAGAGCTGAGGAG 2510
Query 2056 CTGGAGATAGCTTTGATGGAGATGGTCAAAGAAGATAACAGATTGGAATTAAGTGCACGG 2115
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2511 CTGGAGATAGCTTTGATGGAGATGGTCAAAGAAGATAACAGACTGGAATTAAGTGCACGG 2570
Query 2116 ATTGAACAACTGGAAAGGGAAGTAAGAGAACTAAAGCAAGTCCTTTCTGATAAGAAAGAA 2175
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2571 ATTGAACAACTGGAAAGGGATGTAAGAGAACTAAAGCAAGTCCTTTCTGACAAGAAAGAA 2630
Query 2176 CAAGAAACAGCAATGCTTCAGGTCTTGATGAAAGTTGAGCAAGACCAAAAGCTAACAGAA 2235
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2631 CAAGAAACAGCAATGCTTCAGGTGTTGATGAAAGTTGAGCAAGACCAAAAGCTAACAGAA 2690
Query 2236 GATGCCCGGATAAGTGCAGAACAAGATGCAGCTGCACAAAGATATGCAGTACATGTGCTT 2295
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2691 GATGCCCGGATAAATGCAGAGCAGGATGCAGCTGCACAAAGATATGCAGTACATGTGCTT 2750
Query 2296 CAGGAAAAGAATGAGAAGCTTGTGACTCAACTCGCTCAAATGGAGAAGAAACTAGTTACA 2355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2751 CAGGAAAAGAATGAGAAGCTTGTGACTCAACTCGCTCAAATGGAGAAGAAACTAGTTACA 2810
Query 2356 GCAGAAACAACACTCGAAGCAACTTTGCAATATGAATCAGGTCAAAATAAAGCACTATCA 2415
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 2811 GCAGAAACAACACTCGAAGCTACTTTGCAATATGAATCCGGTCAAAATAAAGCACTATCA 2870
Query 2416 TCATCTCCAAGGTTTACTCGTACTACA-CAGGAGAGCCCTAAAAAGAAGACAGGCTTCCT 2474
||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 2871 TCATCTCCAAGGTTTACTCGTACTACAAC-GGAGAGTCCTAAAAAGAAGACAGGCTTCCT 2929
Query 2475 ATCATTTGGGCTTGGCTGGCGCGACAGGAACAAGGCAAAGCAAACGGATGAATCAAATGT 2534
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 2930 ATCATTTGGGCTTGGCTGGCGCGACAGGAACAAGGCAAAACAAACAGAGGAATCAAATGT 2989
Query 2535 TGATAATACTAGTAATGCATCATCTGAATCCAAATCTCCATCAAAAGAAAGC 2586
||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2990 TGATAATACTAGTAATGCAGCATCTGAAGCCAAATCTCCATCAAAAGAAAGC 3041
Score = 1794 bits (971), Expect = 0.0
Identities = 1295/1437 (90%), Gaps = 79/1437 (5%)
Strand=Plus/Plus
Query 1 ATGTTGTTATCTTTGGTGAGCAAGCGCTCACTGGAGGTTGATTCCAGGGACGCTTATGGA 60
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 351 ATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAGGGACGCCTATGGA 410
Query 61 TTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGAATACCTTAGCATCTATACAGAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGAATACCTTAGCATCTATACAGAG 470
Query 121 GAAGAGACAGAGAGGGCAGAGAAATGGAAAAACTTTCTTGACCGACAAGAAAACAGAGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 471 GAAGAGACAGAGAGGGCAGAGAAATGGAAAAACTTTCTTGACCGACAAGAAGACAGAACC 530
Query 181 GCTGAACCTTGTTCCTCAGAAGAGGAGTTTCAGGATTCATTCCAGGCTGATGGTTTGGAA 240
|||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 531 GCTGAACCTTGTTCCTCAGATGAGGAGTTTCAGGATACATTTCAGGCTGATGGTTTGGAA 590
Query 241 TCTGGAGAGGAGAGTGA-T-----TCAGAGGAGGGTTCAAGAAACGGGAAACTTGAAGAT 294
||||||||||| ||||| | |||||||||||||||||||| ||||||| |||||||
Sbjct 591 TCTGGAGAGGATAGTGATTCAGAATCAGAGGAGGGTTCAAGAAATGGGAAACATGAAGAT 650
Query 295 TGTGAACTTAGTGGTACAAGAGTACTGCAGCATCTTGAACAAGATAGGACTGAAACAGCT 354
|||||||||||||||||||| | | |||||| ||||||||||||||||||||||||| |
Sbjct 651 TGTGAACTTAGTGGTACAAGTG-A--GCAGCAACTTGAACAAGATAGGACTGAAACAGTT 707
Query 355 GGTGATGTTTCAAAAGAGAGAGAAACAGCCGAGGAGGCGCAGGTTCTTGACGAGCACCAA 414
||||||||||||||||||| |||| ||||||||||||| | ||||||| | | |
Sbjct 708 GGTGATGTTTCAAAAGAGACAGAACCAGCCGAGGAGGCACTGGTTCTT-----G-A-C-- 758
Query 415 TATTTGAGGGAGAAGAGTCTTAGAAGAGACACAGAACCTGTAAAAGACGAGGATGAAGAG 474
|||||||||||||| ||||||||| |||||||||| ||||| || |||
Sbjct 759 ------------AAGAGTCTTAGAAGCGACACAGAATCTGTAAAAGATGAGGAGGAGGAG 806
Query 475 ATATTTGAATCTGACAAGGATAAAGAATCATCAGT-GGAAAGTGAAAGTGAATCTGATAA 533
| |||||||||||| ||||||||||||||||| || || ||||||||||||||| ||| |
Sbjct 807 AAATTTGAATCTGATAAGGATAAAGAATCATCTGTCGG-AAGTGAAAGTGAATCGGATGA 865
Query 534 AGAACAACAATCTCAAGCAGTAAAAGAACCTGTGGATCATGT--ACA-T----------- 579
|||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 866 AGAACAACAATCTCAAGCAGTAAAAGAACCTGTGGATCATGTACACATTCAACAAGAAGA 925
Query 580 ----CTTGTGGCAGAAGAAGATAAATGTGAACCGGGACAT---GATAAAGCAGAAAAAGA 632
||||||||||||||||||||||||||| |||||||| || |||||| |||||||
Sbjct 926 AAAGCTTGTGGCAGAAGAAGATAAATGTGAATCGGGACATGAAGAAAAAGCACAAAAAGA 985
Query 633 AACCAAGG---CTCGTTCAGTTATAGAATGGGCTCATATTCGACCTTGTCTTGCGTCCAT 689
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 986 AACCAAGGCTCCTCGTTCAGTTATAGAATGGGCTCATATTAGACCTTGTCTTGCGTCCAT 1045
Query 690 AGAGGATATGATGTGCGCTCGTGTTAAGAACGTAAAGTATA-TGAAAAATAATCAGAAGA 748
||||||||||||||| ||||||||||||||||||||| || | |||||| ||||||||
Sbjct 1046 AGAGGATATGATGTGTTCTCGTGTTAAGAACGTAAAGTCTACT-AAAAATGGTCAGAAGA 1104
Query 749 CTATAGTAGGTGACCATATTTCACCGAGAAAAGAATCGCTGCCTTCCATTGAAGAATCTG 808
|||||||| ||||||| |||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 1105 ATATAGTAGATGACCATGCTTCATCGATAAAAGAATCGCTGTCTTCCATTGAAGAATCTG 1164
Query 809 AACAAAACTCTGGAGAAAATGACCGTGATAGTGAGACTTCCACGAGTAGATCCCATTCGA 868
|| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1165 -----------GG-GAAAATGACCGTGACAGTGAGACTTCCACAAGTAGATCCCATTCGA 1212
Query 869 T----GAAG-GAA-GAA---CAGGGTAGTGTTTCTCCAGAGCCATTTTTCCCTTGGTATG 919
| |||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TAAAGGAAGAAAACGAAGCTCAGGGTAGTGTTTCTCCAGAGCCATTTTTCCCTTGGTATG 1272
Query 920 AAGAACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTCAGAGGGGAGGTTTGGC 979
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1273 AAGAACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAGGTTTGGC 1332
Query 980 AAGCCTTTGTAGGTGTAAAGGCAAGAAGAGTTGAGAGATACTATCAGGATTTGTTGGCTC 1039
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTATCAGGATTTGTTGGCTC 1392
Query 1040 AGATAACTAACTCTGATGAAAGCTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTG 1099
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AAATAACTAACTCTGATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTG 1452
Query 1100 AAAAGGATATACCTCGGACATTCCCAGGCCACCCTGCTCTGAATGAAAATGGTCGCGATT 1159
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 1453 AAAAGGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGAGATT 1512
Query 1160 CGTTAAGGCGGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGATACTGTCAGG 1219
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1513 CGTTAAGGCGGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAGG 1572
Query 1220 CTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGATGCCAGAGGAAAATGCATTTTGGA 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 CTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGATGCCAGAGGAAAATGCATTTTGGA 1632
Query 1280 CTTTGGTTGGGATTATTGATGACTATTTTGATGGCTACTATACAGAAGAGATGATAGAAT 1339
||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1633 CTTTGGTTGGGATAATTGATGATTATTTTGATGGCTACTATACTGAAGAAATGATAGAAT 1692
Query 1340 CTCAGGTTGATCAACTAGTCTTTGAAGAGTTGATGCGAGAAAGATTTCCAAAGCTCG 1396
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1693 CTCAGGTTGATCAACTAGTCTTTGAAGAGTTGATGCGCGAAAGATTTCCAAAGCTCG 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137206589105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5