BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482722
Length=466
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37300.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 464 3e-130
> AT2G37300.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 12 growth stages. | chr2:15662567-15664599
REVERSE LENGTH=1025
Length=1025
Score = 464 bits (251), Expect = 3e-130
Identities = 394/457 (86%), Gaps = 34/457 (7%)
Strand=Plus/Plus
Query 1 GCAGAGCTTATTACAAGAAAGATGGAAGAGCTGGAGCGTAATCTGAAAGAAGAAATTAGA 60
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 340 GCAGAGCTTATTACTAGAAAGATGGAAGAGTTGGAGCGTAATCTGAAAGAAGAGATCAGA 399
Query 61 TTAAGGGAAAAAGCAGAGAAGAGACTAAAGTTTCTGATGAA-AAAGCTTGAATCCATTAA 119
|| ||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||
Sbjct 400 TTGAGGGAAAAAGCAGAGAAGAGACTAAAGCTTCTGATGAAGAAA-CTTGAATTCATTAA 458
Query 120 AGGGTCACGCAGTTCGGAGGGATCAAATTCATCTGAAGTTTCTTGTATATCATCAGTTTG 179
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct 459 AGGGTCACGCAGTTCGGAGGGATCAAGTTCATCTGAAGTTTCTTGCATATCATCGGTTTG 518
Query 180 CACTTCAGCCTCCAAGGAAGAAGAAGAAGAAACTCATGAAAATGGAGCCGTGGATGAAGA 239
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 519 CACTTCAGCCTCCAAGGAAGAAGAAGAAGAAACTCATGATAGTGGAGCCGTGGATGAAG- 577
Query 240 GAAAA-CTGATCATGCAACTGCAAATGCTGCTTCCATGAAAGAAGCTGATTCAAAATCAA 298
||||| |||| |||||||||| ||||| ||| |||| | ||||||||||||||| ||||
Sbjct 578 GAAAAACTGACCATGCAACTGAAAATGTTGCCTCCACGGAAGAAGCTGATTCAAGTTCAA 637
Query 299 AGCTCAAAGATGTTGCTTC-----AA-C-----------CT-CAA------GTCATGAAG 334
|||||||||||||| |||| || | || ||| ||||| |||
Sbjct 638 AGCTCAAAGATGTTTCTTCTGGTGAAGCAAGTGTTGTTGCTTCAACCTCAAGTCATAAAG 697
Query 335 AAGAATCACAGGCTGGTAATGAGTTTTCTTGGTACTCAGATGCAACTTAAGAGTTGAAGA 394
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 698 AAGAATCCCAGTTTGGTAATGAGTTTTCTTGGTACTCAGATGCAACTTAAGAGTTCAAGA 757
Query 395 CA-CAAGAATGTTCA-T-TTCTCATCCCCTAAACAAC 428
| ||||||| | || | || | || |||||||||||
Sbjct 758 -ATCAAGAATAT-CAATCTTTT-ATTCCCTAAACAAC 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22153258827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5