BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482724
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37320.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2314 0.0
> AT2G37320.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15667208-15668851 FORWARD LENGTH=1644
Length=1644
Score = 2314 bits (1253), Expect = 0.0
Identities = 1467/1570 (93%), Gaps = 16/1570 (1%)
Strand=Plus/Plus
Query 1 TTTTGAGTTTCATGTCTTGTCTGAGTAATTATTATTGTCGAGCTGTCAGG-TATATTCAA 59
|||| |||||||||||||||||||| |||||||||||||||||| || || |||| ||
Sbjct 5 TTTTTAGTTTCATGTCTTGTCTGAGAAATTATTATTGTCGAGCTTTC-GGTTATAAACAG 63
Query 60 TCTCGGTCTTGCTACAGTCGATCACTGAATCGTGATATAGCTAACGAATCATCTGACGTT 119
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 64 TCTCGATCTTGCTACAGTCGATCACTGAATCGTGAAATAGCTAACGAGTCATCTGAAGTT 123
Query 120 GAGAGACGAGCTCGTTCTCTGAGAGTTTTAGATATCATATCTTCGAAATCTGGTGGAGTT 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 124 GAGAGACGAGCTCGTTCTCTGAGAGTTTTGGATATCATATCTTCGAAATCTGGTGGAGTT 183
Query 180 TCGAATCGACAGAATCATTTTGGTTTCGTTCAGGAATTTCTACAAACAGATTCGAGGCAA 239
|||||||| ||| | ||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 184 TCGAATCGTCAGGACCATTTTGGTTTCGTTCAGGAATTTCGACAAACAGATTCGTGGCGA 243
Query 240 TTCAGAGGTCAAGCAATTTCCGAGGATTTTGATCTCTCAAGAACCAAAAATGGAGTTTCA 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TTCAGAGGTCAGGCAATTTCCGAGGATTTTGATCTCTCAAGAACCAAAAATGGAGTTTCA 303
Query 300 AGCGTGCTCGAAGAAGTTATGCTGGAGGATTCTTCAAGCTCTGTCAAGCGAGATGGATGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGCGTGCTCGAAGAAGTTATGCTGGAGGATTCTTCAAGCTCTGTCAAGCGAGATGGATGG 363
Query 360 AGTTTCGATGCTTATGGTTTATCATCCGCCGTGAGATCCTGTGGGTCGAATCGAGACTTT 419
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 364 AGTTTCGATGCTTATGGTTTATCATCCGCCGTGAGATCTTGTGGGTTGAATCGAGACTTT 423
Query 420 AGAACCGGTTCGGGGTTTCATTGCTTAGCATTGAAAGGTGGGTTTATCTCAGATGTCTAC 479
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 424 AGAACCGGTTCTGGGTTTCATTGTTTAGCGTTGAAAGGTGGGTTTATCTCAGATGTCTAC 483
Query 480 TTAGGAAGTTCCCTGGTCGTTTTGTACCGAGATTCTGGTGAAGTAGAGAATGCACATAAA 539
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 484 TTAGGAAGTTCTCTGGTCGTTTTGTACAGAGATTCTGGTGAAGTAGAGAATGCATATAAA 543
Query 540 GTGTTTGCTGAAATGCCTGACAAGAACGTGGTTTCATGGACGGCTATGATTTCAGGGTTT 599
||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 544 GTGTTTGAAGAAATGCCTGAGAGGAATGTGGTTTCATGGACGGCTATGATTTCAGGGTTT 603
Query 600 GCGCAAGAATGGCGAGTTGATATCTGCATGAAGCTGTATTCAGAGATGAGAAATTCAACC 659
||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||
Sbjct 604 GCGCAAGAATGGCGAGTTGATATCTGCTTGAAGCTTTATTCAAAGATGAGAAAGTCAACC 663
Query 660 TCTGATCCGAATGATTATACTTTCACGGCTCTCTTGAGCGCTTGCACGGGAAGCGGAGCC 719
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 664 TCTGATCCGAATGATTACACATTCACGGCTCTCTTGAGCGCTTGCACGGGAAGCGGAGCC 723
Query 720 CTAGGGCAAGGAAGAAGCGTTCATTGTCAGACACTCCAAATGGGATTGAAGTCGTATCTT 779
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 724 CTAGGGCAAGGAAGAAGTGTTCATTGTCAGACACTCCACATGGGATTGAAGTCGTATCTA 783
Query 780 CATATCTCAAACTCTCTCATCTCGATGTACTGCAAATGTGGCGATTTGAAGGATGCTTTT 839
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 784 CATATCTCAAACTCTCTCATCTCGATGTACTGCAAATGCGGTGATTTGAAGGATGCTTTT 843
Query 840 CGTATCTTTGACCAGTTTTCAAACAAAGACGTTGTTTCCTGGAACTCTATGATTGCTGGT 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 844 CGTATCTTTGACCAGTTTTCAAACAAAGACGTTGTTTCTTGGAACTCTATGATTGCTGGT 903
Query 900 TACGCGCAGTACGGCCTTGCAACGCAAGCAATCGAGCTCTTTGAATTAATGATGCCCAAA 959
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 904 TACGCGCAGCACGGCCTTGCAATGCAAGCAATCGAGCTCTTTGAATTAATGATGCCTAAA 963
Query 960 AGCGGAATAAAGCCGGATGCAATCACATATCTAGGACTTCTGTCATCGTGCAGACACGCA 1019
||||||| |||||| ||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 964 AGCGGAACAAAGCCAGATGCAATCACATATCTAGGAGTTTTGTCATCGTGTAGACACGCA 1023
Query 1020 GGTCTTGTAATAGAAGGAAGAAAGTTCTTCAACTTGATGGCAGAACGCGGCCTGAAACCA 1079
|||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct 1024 GGTCTTGTAAAAGAAGGAAGAAAGTTCTTCAATTTGATGGCGGAACACGGCCTGAAACCA 1083
Query 1080 GAACTCAACCACTACTCTTGTCTGGTCGATCTTCTTGGCAGATTTGGTCTGTTGCAAGAA 1139
||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1084 GAACTCAACCATTACTCTTGTCTAGTCGATCTTCTCGGGAGATTTGGTCTGTTGCAAGAA 1143
Query 1140 GCCCTGGAACTGATAGAGAACATGCCAATGAAACCAAACTCAGTCATATGGGGATCCCTG 1199
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1144 GCCCTGGAACTGATCGAGAACATGCCAATGAAACCAAACTCAGTCATATGGGGATCTCTG 1203
Query 1200 CTTTTTTCTTGCCGTGTGCACGGCGATGTCTGGATGGGAATCAGAGCTGCAGAGGAACGG 1259
|| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1204 CTATTCTCTTGCCGTGTTCACGGCGATGTCTGGACCGGAATCAGAGCTGCAGAGGAACGA 1263
Query 1260 TTGATTCTTGAACCTGAATGTGCAGCCACACATGTCCAGCTGGCGAATCTTTACGCCAGT 1319
| || ||||||||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 1264 CTAATGCTTGAACCTGATTGCGCAGCCACGCATGTCCAGCTGGCAAATCTTTACGCCAGT 1323
Query 1320 GTCGGCTACTGGAAAGAGGCGGCGATAGTGAGGAAACTGATGAAAGATAAAGGACTGAGG 1379
|| || ||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 1324 GTAGGGTACTGGAAAGAAGCGGCGACAGTGAGGAAGCTGATGAAAGATAAAGGACTGAAG 1383
Query 1380 ACGAATCCAGGTTGTAGTTGGATCGAGATCAATAA-TAATATTTTTATGTTTAAAGCTGA 1438
|||||||| ||||| |||||||||||||||||||| || | |||| ||||||||||||||
Sbjct 1384 ACGAATCCGGGTTGCAGTTGGATCGAGATCAATAACTA-TGTTTTCATGTTTAAAGCTGA 1442
Query 1439 AGATGGTAGCAACTGTAGAATGCTAGAGATTGTTCATGTTCTTCATTGTCTAATTGATCA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1443 AGATGGTAGCAACTGTAGAATGCTAGAGATTGTTCATGTTCTTCATTGTCTCATTGATCA 1502
Query 1499 CATGGAGTTCCTCTAATAT-C----T-C------ATTAGTTTTATAGTGTATACCAGATC 1546
||||||||||||||||||| | | | ||||||||||||||| ||||||||||
Sbjct 1503 CATGGAGTTCCTCTAATATTCAGGGTTCTCTCTCATTAGTTTTATAGTGCATACCAGATC 1562
Query 1547 CATATCTTTT 1556
|| |||||||
Sbjct 1563 CAGATCTTTT 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5