BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482731
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37380.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1666 0.0
> AT2G37380.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G39370.1);
Has 1284 Blast hits to 422 proteins in 114 species: Archae
- 0; Bacteria - 90; Metazoa - 125; Fungi - 151; Plants - 136;
Viruses - 0; Other Eukaryotes - 782 (source: NCBI BLink).
| chr2:15686758-15688003 FORWARD LENGTH=1246
Length=1246
Score = 1666 bits (902), Expect = 0.0
Identities = 1141/1248 (91%), Gaps = 50/1248 (4%)
Strand=Plus/Plus
Query 1 AAGTAAACCACAGAGAG-AAATATATACAAATTAAGACAGATACAT--ACACTATTACAT 57
||||||||||||||||| |||||||||| | |||||||||||| |||| |||||||
Sbjct 1 AAGTAAACCACAGAGAGAAAATATATAC--A--CAGACAGATACATACACACAATTACAT 56
Query 58 ACATAGAG--AGACATGGATTTGCATGAATCAGAATCACGAACACATGTTTTGTCCAACG 115
|||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 57 ACATAGAGAAAGACATGGATTTGCATGAATCAGAATCAAGAACACATGTTCTGTCCACCG 116
Query 116 ACGGTGATGATGGTTACATAGACTTAGAAGTCAAtctctcttc--c-tcttcttc-t-t- 169
| ||||||||||||||||||||| | ||||||||||||||||| | |||||||| | |
Sbjct 117 ATGGTGATGATGGTTACATAGACATGGAAGTCAATCTCTCTTCTTCTTCTTCTTCTTCTA 176
Query 170 c--c-tcctcaagcttcttcagcttccccgtcacttcctcGCCGCCGCAAAGCAGAGAGT 226
| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 177 CTTCGTCCTCAAGCTTCTTCAGCTTCCCCGTCACTTCCTCCCCGCCGCAAAGCAGAGAGT 236
Query 227 TCGAGTTTCAAATGTGTTCCTCCGCCGTAGCTTCCGGTGAATCAACGACATCTCCGGCCG 286
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 237 TCGAGTTTCAAATGTGTTCCTCCGCCGTAGCTTCCGGTGAATCAACCACATCTCCGGCTG 296
Query 287 ATGAGCTTTTCTACAAAGGTCAACTTCTTCCTCTTCATCTCCCTCCTCGTCTCAAAATGG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATGAGCTTTTCTACAAAGGTCAACTTCTTCCTCTTCATCTCCCTCCTCGTCTCAAAATGG 356
Query 347 TACAAAAGCTTCTTCTCGCTTCCTCCTCC---ACCGCCGCAACAGAAACTCCTATTTCCC 403
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 357 TACAAAAGCTTCTTCTCGCTTCCTCCTCCTCCACCGCCGCAACGGAAACTCCTATCTCCC 416
Query 404 CACGCGCCACCG----T--ATCCTCGCCGCGGAGATTCAGTAGCAGTGAGATCGGACAAG 457
|||||||| ||| | || || || ||||||||||||||| |||||||||||||||
Sbjct 417 CACGCGCCGCCGCAGATGTATTGTCTCCACGGAGATTCAGTAGCTGTGAGATCGGACAAG 476
Query 458 ACGAGCAAT-GTTTCTTTGAGATTTCAACAGAGCTCAAGAGATTCATTGAGAGCAGCGAG 516
||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 477 ACGAG-AATTGTTTCTTTGAGATTTCGACAGAGCTCAAGAGATTCATCGAGAGCAACGAG 535
Query 517 AATCATCTTGGAAACAGTTGGAGCAAAAAGATCAAACATTCATCGATTACACAAAAGCTT 576
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 536 AATCATCTTGGAAACAGTTGGAGCAAAAAGATCAAACATTCATCCATAACACAAAAACTC 595
Query 577 AAAGCCTCACGCGCTTACATAAAAGCTCTGTTCTCAAAACAAACCTGCTCAGATTCATCA 636
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 596 AAAGCCTCACGCGCTTACATAAAAGCTCTGTTCTCAAAACAAGCCTGTTCAGATTCATCA 655
Query 637 GAGATCAATCTAAGATTCAAAATTGAACCTTGTAAAGTCTCAAGAAAGAAGAACCCTTTT 696
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 656 GAGATCAATCCAAGATTCAAAATTGAACCTTCTAAAGTCTCAAGAAAGAAGAACCCATTT 715
Query 697 ATAAACAGTGAAAAACCTCAATTGTTTCATAGAAGATCCTTCTCTGGTGTGATACAGAGA 756
| |||||||| || |||| || ||||||| ||||| |||||||||||||||||||||
Sbjct 716 GTGAACAGTGAGAATCCTCTGTTAATTCATAGGAGATCTTTCTCTGGTGTGATACAGAGA 775
Query 757 CATTCTCAAGCTAAGTGTTCAACAtcttcttcttcttcttcCTCTGCATCGTCGTTGTCT 816
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 776 CATTCTCAAGCAAAGTGTTCAACATCTTCTTCTTCTTCTTCCTCTGCGTCTTCGTTGTCT 835
Query 817 TCTTCGTTCAGTTTTGGATCAAACGGGTCTTTGGATCTGCAGACACTGATGAGAAGCAGC 876
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 836 TCTTCGTTCAGTTTTGGATCAAACGGGTCGTTGGATCTGCAGACACTGATGAGAAGCAGC 895
Query 877 AACGCGAGTGATAACTCCATTGAAGGAGCGATTGAGCATTGTAAGCAGTCGTTTACTAGT 936
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 896 AATGCGAGTGATAACTCCATTGAAGGAGCGATCGAGCATTGTAAGCAGTCGTTTACTACT 955
Query 937 AGGAAGAGCAATGTGACTGAATCTGAGCTCTGTTCTTCAAGAACCTCTGTTTCTACTTGT 996
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGGAAGAGTAATGTGACTGAATCTGAGCTCTGTTCTTCAAGAACCTCTGTTTCTACTTGT 1015
Query 997 GGTGACCTTGAAAAAGATTGAAATTCTCAGATCTGTGAAGCGCTCTCT----GATTCTCA 1052
||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||
Sbjct 1016 GGTGACCTTGATAAAGATTGAGATTCTCAGATCTGTGACGCTCTCTCTCTCTGATTC-CA 1074
Query 1053 TTCCAAAAGGATACaaaaaaaaaa-a-a-aaa--G---A------TAACTTTTCTCTTCT 1098
|||||||||||||||||||||||| | | ||| | | |||||||| ||||||
Sbjct 1075 TTCCAAAAGGATACAAAAAAAAAATACATAAAAAGTTCAAAAAGATAACTTTT-TCTTCT 1133
Query 1099 ACTCTGatttttttacttttgtattttagattattttgtgtgcttttgtt-tagaagttt 1157
||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1134 ACTCTGATTTTTTTATTTTTGTAATTTAGATTCTTTTGTGTGCTTTTGTTGTAGAAGTTT 1193
Query 1158 gCTGAATTCGAGGTTTCTTTATGTGTTATAAATGTTAATGCTACCAAA 1205
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1194 GCTGAATTCGAGGTTTCTTTATGTGTTATAAATGTTAATGCTACAAAA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5