BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482732
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37400.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1716 0.0
> AT2G37400.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15696155-15697402 REVERSE LENGTH=1248
Length=1248
Score = 1716 bits (929), Expect = 0.0
Identities = 1139/1234 (92%), Gaps = 40/1234 (3%)
Strand=Plus/Plus
Query 1 GTAGGGTTTTTAGGGGTTTtctctctctctctctGCAATCATGGAGTCTCTAGGGAAGCT 60
|||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 1 GTAGGGTTTTTAGGGG-TTT-TCTCTCTCT-T-TGCAATCATGGAGTCTCTAGGGAAGCT 56
Query 61 ACAGCTTCATCAGCAACCAAATCACCTCTCTTTCACTCACTTCTCTTCATCTTTCCCTAA 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 57 ACAGCTTCATCAGCAACCAAATCACCTCTCTTTCACTCATTTCTCTTCATCTTTCCCCAA 116
Query 121 AACA-CCTTCGTCTTTCTCTCTCAGATCCTTACCCAGATCAACATCATCCTTGAAATGCG 179
|| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 117 AA-AGCCTTCGTCTTTCTCTCTCAGATCCTTACCCAGATCAACATCATCCTTCAAATGCA 175
Query 180 TTTCAATCAAAGCTTCATCATCCAAATCCCAAGACTCGAGGCTCTCATTCCTCAAATCCA 239
|||||||||||||||| |||||||| || |||||||||| ||||||| ||||||||||||
Sbjct 176 TTTCAATCAAAGCTTCCTCATCCAAGTCTCAAGACTCGAAGCTCTCAATCCTCAAATCCA 235
Query 240 CCTGCGTCACCTTCACTGCAGCAGCGGCACTGTTCCTTGTGAATCTCCAGCTCAAACCTT 299
| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 236 CATGCGTCAGCTTCACTGCGGCAGCAGCACTGTTCCTTGTGAATCTCCAGCTCAAACCTT 295
Query 300 CTCCGGCGATTGCGGCTCCTGTGGCGGCGACACCGTCGGTGGAATCTCTTAAACAGAGTA 359
| ||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||
Sbjct 296 CACCGGCGATTGCGGCTCCTGTGGCGGCGACGCCGTTAATGGAATCTCTCAAACAAAGT- 354
Query 360 ACAACGGAGATGTGTCATTGGAAGAAGAAGAGAGATCGCTCGAAGA-TCATCTTGCTTCT 418
|||||| | || ||||| ||||||||||||||||| |||||||| | |||||||||||
Sbjct 355 --AACGGAAACGTTTCATTTGAAGAAGAAGAGAGATCACTCGAAGAGT-ATCTTGCTTCT 411
Query 419 CACCCTGAAGATGTGGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTAGAAAG 478
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 412 CACCCTGATGATGTTGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTCGAAAG 471
Query 479 CTTATAGAAGCGATTGAATTGATTGATAGGTTGATTGAATTGGAACCAGAGGAGAAGGAA 538
||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CTTCTAGAAGCTATAGAATTGATTGATAGGTTGATTGAATTGGAACCAGAGGAGAAGGAA 531
Query 539 TGGCCAATTTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCTGCTAAAACT 598
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TGGCCAATGTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCTGCTAAAACT 591
Query 599 GGTTTTGAAGAGATTCTAGTTAAGGATCCGCTTCGTGTCGAGGCTTATCACGGCTTAGTT 658
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 592 GGTTTTGAAGAGATTCTAGTCAAAGATCCGCTTCGTGTCGAGGCTTATCACGGTTTAGTT 651
Query 659 ATGGCTTATTCTGATTCCGGTGCTGATTTGAATGCGGTGGAGAAGAGAATTGAGGAGGCA 718
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct 652 ATGGCTTATTCTGATTCTGGTGATGATTTGAATGCTGTGGAGAAGAGAATTGAGGAGGCA 711
Query 719 ATGGTTAGGTGCAAGAAGGAGAAGAATCGTAAGGATTTGAGGGATTTTAAGCTACTAGTG 778
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 712 ATGGTTAGGTGCAAGAAGGAGAAGAATCGTAAGGACTTGAGAGATTTTAAGCTACTAGTG 771
Query 779 GCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAGTTGTATGAGGAGCTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAGTTGTATGAGGAGCTT 831
Query 839 GTGAAGGAAGAACCGAGAGATTTCAGGCCGTATCTATGTCAAGGGATTATATACACAGTG 898
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GTGAAGGAAGAGCCGAGAGATTTCAGGCCGTATCTATGTCAAGGGATTATATACACAGTG 891
Query 899 TTGAAGAAGCAAGA-TGAGGCGGAGAAACAGTTTGAGAAGTTTAGGAGACTTGTCCCGAA 957
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TTGAAGAAGGA-GAATGAGGCGGAGAAACAGTTTGAGAAGTTTAGGAGACTTGTCCCGAA 950
Query 958 GAATCATCCTTACAGAGAGTATTTTATGGATAATATGGTTGCTACGAAGATCTTTGCGGA 1017
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 951 GAATCATCCTTATAGAGAGTATTTTATGGATAATATGGTTGCTTCGAAGCTCTTTGCCGA 1010
Query 1018 GAAAGCACAGCGAGAGATGGCTGGATGATTG-CTT--GAA-TG-T-GAT--T--TTG--T 1065
||| | ||||||||||||||||| ||||||| ||| ||| || | | | | ||| |
Sbjct 1011 GAAGGTACAGCGAGAGATGGCTGAATGATTGTCTTACGAAATGCTAG-TCGTGCTTGAAT 1069
Query 1066 -TGGT---------CT-TTT-CTGTTGCTAATGATTTTAGATGGTTGTAGTCGGTAGTTT 1113
|||| || ||| |||||||||||| ||||||||||||||||| |||| ||
Sbjct 1070 GTGGTTTTTTTTGTCTCTTTTCTGTTGCTAATGGTTTTAGATGGTTGTAGTATGTAGGTT 1129
Query 1114 GAGCATGAATTTATATCGTGATCGTGTGTTGTAGTATCG-ATCGAATACTCAATATGGGA 1172
|||| ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1130 GAGCTTGAATTTATGTCGTGATCGTGTGTTGTAGTA-CGGATCGAATACTCAATATGGGA 1188
Query 1173 ATCTTGAATTGCTTGCACTGTTTTTTGAGATGTG 1206
||||||||||||||||||||||||||||||||||
Sbjct 1189 ATCTTGAATTGCTTGCACTGTTTTTTGAGATGTG 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5