BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482733 Length=1083 Score E Sequences producing significant alignments: (Bits) Value AT2G37410.1 | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase ... 833 0.0 > AT2G37410.1 | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase inner membrane subunit 17-2 | chr2:15697842-15699275 REVERSE LENGTH=1162 Length=1162 Score = 833 bits (451), Expect = 0.0 Identities = 606/676 (90%), Gaps = 30/676 (4%) Strand=Plus/Plus Query 432 GGGGTTGGCGCGGCTTCAAGATCAGCGGCTTTTGGAGGGGTTTTACTTGCTTTGATTGAA 491 |||| ||| || ||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct 475 GGGGCTGGTGCTGCTTCGAGATCAGCTATTTTTGGAGGGGTTTTGCTTGCTTTGATTGAA 534 Query 492 GGAGCTGGGATAATGTTGAACAAGCTACTGGCTCAGCCTCAGAATATGATGATGGAGGAT 551 ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 535 GGAGCTGGGATCATGTTGAACAAGGTACTGGCTCAGCCTCAGAATATGATGATGGAGGA- 593 Query 552 CCC-GGAATGCAAGGAATGCCTGGGATGC--------C-CGGAATGCCTGGGATGCAAGG 601 ||| ||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 594 CCCTGGAATGCAAGGAATGCCTGGGATGCAGGGAATGCAGGGAATGCCTGGGATGCCCGG 653 Query 602 AATGCAAGGAATACAAGGAATGCAAGGAATGCAGATGGGGCAGATGCAGAATCAAGCACA 661 |||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 654 AATGCAAGGAATGCCTGGGATGCAAGGAATGCAGATGGGGCAGATGCAGAGTCAAGCACA 713 Query 662 GATGATGTCAGAGAGTCAAAACCAGAGTACAG------C-T--TCATCATCATCATGGTT 712 ||| | |||||||||||||||||||| ||||| | | ||||||||||||||||| Sbjct 714 GATAAGGTCAGAGAGTCAAAACCAGAATACAGCTTCATCATCATCATCATCATCATGGTT 773 Query 713 TGGAGGGCTTTTTGGTAAGAAAAAGGAGGAGGTGCAACCAGGCAGTGGAAGTAAAACAGA 772 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 774 TGGAGGGCTTTTTGATAAGAAAAAGGAGGAGGTGCAACCAGGCAGTGAAAGTAAAACAGA 833 Query 773 GGTGTTGGAGAGTTTTGATGCACCTCCGGTGCCATCATTTGAGTACAAGTAAGCTTATGT 832 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| Sbjct 834 GGTGTTGGAGAGTTTTGATGCTCCTCCGGTGCCATCATTTGAGTTCAAGTAAGCTT-TGT 892 Query 833 GGACATC----TCTCTGTCATTCAATGGTTGGTTTGCCTACTGCCTCAACAATCAATTCC 888 ||||||| |||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 893 GGACATCTATTTCTCTGTCATCCAA----TGGTTTACCTACTGCCTCAACTATCAATTCC 948 Query 889 ATTTCGTCGT-TTTTGGTGTATCCTCTGTTCTCTGCTGAATTCTTCTTGTTCATGGAAGA 947 |||||||||| |||| || |||||| |||||| |||||||||||||||||||||||||| Sbjct 949 ATTTCGTCGTCTTTTTGTCTATCCTAAGTTCTCAGCTGAATTCTTCTTGTTCATGGAAGA 1008 Query 948 ATCAGCATGCTATGTCCTCTCTCCTTTCGCCTATGGTTATGTTTCAATGAGCTTATGTAC 1007 ||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||| || Sbjct 1009 ATCAGCATGCTATGTTCTCTCTCTTTTCACTTATGGTTATGTTTCAATGAGCTTATGCAC 1068 Query 1008 TCAATCTAGGAATCTTATCTTTGTGAAACCATTCCACAGATATTGTTGGTTCTTAAATAA 1067 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 TCAATCTAGGAATATTCTCTTTGTGAAACCATTCCACAGATATTGTTGGTTCTTAAATAA 1128 Query 1068 TGTAGTTATAGATTTT 1083 |||||||||||||||| Sbjct 1129 TGTAGTTATAGATTTT 1144 Score = 623 bits (337), Expect = 1e-177 Identities = 409/442 (93%), Gaps = 12/442 (3%) Strand=Plus/Plus Query 1 GACGCCGTTTCTTCATTTT--CTTCCTTCTCTCGCTCACCGTCGCACCTCCTTCATTTtc 58 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 GACGCCGTTTCTTC-TTTTACCTTCCTTCTCTCGCTCACCGTCGCACCTCCTTCATTTTT 59 Query 59 tctctctctctcaaactcg--tct----ctcGTCCGCCGATTAATTCCTCGTTAGTCTCA 112 ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct 60 TCTCTCTCTCTCAAACTCGTCTCTAAAACTCGTCCGTCGATTAATTCCTCGTTAGTCTCA 119 Query 113 GGTTTGATAGAATCATTGCCTGAGGTATCTATTAATGGGAACACCAGAGACATCTCGAGA 172 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || Sbjct 120 GGTTTGATAGAATCATTGCCTGAGGCATCTAATAATGGGAACACCAGAGACATCTCGGGA 179 Query 173 GCCTTGCCCTGACCGTATCCTCGACGATATCGGTGGTGCTTTTGGTATGGGAGCTGTTGG 232 |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 180 GCCTTGCCCTGATCGTATACTCGATGATATCGGTGGTGCTTTTGGTATGGGAGCTGTTGG 239 Query 233 AGGATCTGCCTTTCATTTCATTAAAGGGACTTACAATTCCCCCAAAGGTAGTCGCTTTGT 292 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 240 AGGATCTGCCTTTCATTTCATTAAAGGGACTTACAATTCTCCTAAAGGTAGTCGCTTTGT 299 Query 293 TGGAGGAACACAAGCTGTGAGCATGAATGCTCCTCGT-CTTGGAGGCAGTTTTGCTGTAT 351 ||||||||||||| | ||||||||||| || |||||| || ||||||||||||||||| | Sbjct 300 TGGAGGAACACAATCGGTGAGCATGAACGCACCTCGTACT-GGAGGCAGTTTTGCTGTTT 358 Query 352 GGGGAGGTTTATTCTCGACCTTTGACTGTTCCATGGTGTACTTA-GGCAGAAGGAGGATC 410 ||||||||||||||||||| ||||||||| ||||||||||| || |||| |||||||||| Sbjct 359 GGGGAGGTTTATTCTCGACATTTGACTGTACCATGGTGTACCTAAGGCAAAAGGAGGATC 418 Query 411 CGTGGAACTCTATCATCGCTGG 432 | |||||||||||||| ||||| Sbjct 419 CTTGGAACTCTATCATTGCTGG 440 Score = 60.2 bits (32), Expect = 4e-08 Identities = 39/42 (93%), Gaps = 1/42 (2%) Strand=Plus/Plus Query 548 GGAT-CCCGGAATGCAAGGAATGCCTGGGATGCCCGGAATGC 588 |||| |||||||||||||||||||||||||||| ||||||| Sbjct 644 GGATGCCCGGAATGCAAGGAATGCCTGGGATGCAAGGAATGC 685 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53061976065 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5