BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482733
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37410.1 | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase ... 833 0.0
> AT2G37410.1 | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase
inner membrane subunit 17-2 | chr2:15697842-15699275 REVERSE
LENGTH=1162
Length=1162
Score = 833 bits (451), Expect = 0.0
Identities = 606/676 (90%), Gaps = 30/676 (4%)
Strand=Plus/Plus
Query 432 GGGGTTGGCGCGGCTTCAAGATCAGCGGCTTTTGGAGGGGTTTTACTTGCTTTGATTGAA 491
|||| ||| || ||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 475 GGGGCTGGTGCTGCTTCGAGATCAGCTATTTTTGGAGGGGTTTTGCTTGCTTTGATTGAA 534
Query 492 GGAGCTGGGATAATGTTGAACAAGCTACTGGCTCAGCCTCAGAATATGATGATGGAGGAT 551
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 535 GGAGCTGGGATCATGTTGAACAAGGTACTGGCTCAGCCTCAGAATATGATGATGGAGGA- 593
Query 552 CCC-GGAATGCAAGGAATGCCTGGGATGC--------C-CGGAATGCCTGGGATGCAAGG 601
||| ||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 594 CCCTGGAATGCAAGGAATGCCTGGGATGCAGGGAATGCAGGGAATGCCTGGGATGCCCGG 653
Query 602 AATGCAAGGAATACAAGGAATGCAAGGAATGCAGATGGGGCAGATGCAGAATCAAGCACA 661
|||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 AATGCAAGGAATGCCTGGGATGCAAGGAATGCAGATGGGGCAGATGCAGAGTCAAGCACA 713
Query 662 GATGATGTCAGAGAGTCAAAACCAGAGTACAG------C-T--TCATCATCATCATGGTT 712
||| | |||||||||||||||||||| ||||| | | |||||||||||||||||
Sbjct 714 GATAAGGTCAGAGAGTCAAAACCAGAATACAGCTTCATCATCATCATCATCATCATGGTT 773
Query 713 TGGAGGGCTTTTTGGTAAGAAAAAGGAGGAGGTGCAACCAGGCAGTGGAAGTAAAACAGA 772
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 774 TGGAGGGCTTTTTGATAAGAAAAAGGAGGAGGTGCAACCAGGCAGTGAAAGTAAAACAGA 833
Query 773 GGTGTTGGAGAGTTTTGATGCACCTCCGGTGCCATCATTTGAGTACAAGTAAGCTTATGT 832
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 834 GGTGTTGGAGAGTTTTGATGCTCCTCCGGTGCCATCATTTGAGTTCAAGTAAGCTT-TGT 892
Query 833 GGACATC----TCTCTGTCATTCAATGGTTGGTTTGCCTACTGCCTCAACAATCAATTCC 888
||||||| |||||||||| ||| |||||| |||||||||||||| |||||||||
Sbjct 893 GGACATCTATTTCTCTGTCATCCAA----TGGTTTACCTACTGCCTCAACTATCAATTCC 948
Query 889 ATTTCGTCGT-TTTTGGTGTATCCTCTGTTCTCTGCTGAATTCTTCTTGTTCATGGAAGA 947
|||||||||| |||| || |||||| |||||| ||||||||||||||||||||||||||
Sbjct 949 ATTTCGTCGTCTTTTTGTCTATCCTAAGTTCTCAGCTGAATTCTTCTTGTTCATGGAAGA 1008
Query 948 ATCAGCATGCTATGTCCTCTCTCCTTTCGCCTATGGTTATGTTTCAATGAGCTTATGTAC 1007
||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||| ||
Sbjct 1009 ATCAGCATGCTATGTTCTCTCTCTTTTCACTTATGGTTATGTTTCAATGAGCTTATGCAC 1068
Query 1008 TCAATCTAGGAATCTTATCTTTGTGAAACCATTCCACAGATATTGTTGGTTCTTAAATAA 1067
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TCAATCTAGGAATATTCTCTTTGTGAAACCATTCCACAGATATTGTTGGTTCTTAAATAA 1128
Query 1068 TGTAGTTATAGATTTT 1083
||||||||||||||||
Sbjct 1129 TGTAGTTATAGATTTT 1144
Score = 623 bits (337), Expect = 1e-177
Identities = 409/442 (93%), Gaps = 12/442 (3%)
Strand=Plus/Plus
Query 1 GACGCCGTTTCTTCATTTT--CTTCCTTCTCTCGCTCACCGTCGCACCTCCTTCATTTtc 58
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACGCCGTTTCTTC-TTTTACCTTCCTTCTCTCGCTCACCGTCGCACCTCCTTCATTTTT 59
Query 59 tctctctctctcaaactcg--tct----ctcGTCCGCCGATTAATTCCTCGTTAGTCTCA 112
||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 60 TCTCTCTCTCTCAAACTCGTCTCTAAAACTCGTCCGTCGATTAATTCCTCGTTAGTCTCA 119
Query 113 GGTTTGATAGAATCATTGCCTGAGGTATCTATTAATGGGAACACCAGAGACATCTCGAGA 172
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 120 GGTTTGATAGAATCATTGCCTGAGGCATCTAATAATGGGAACACCAGAGACATCTCGGGA 179
Query 173 GCCTTGCCCTGACCGTATCCTCGACGATATCGGTGGTGCTTTTGGTATGGGAGCTGTTGG 232
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 GCCTTGCCCTGATCGTATACTCGATGATATCGGTGGTGCTTTTGGTATGGGAGCTGTTGG 239
Query 233 AGGATCTGCCTTTCATTTCATTAAAGGGACTTACAATTCCCCCAAAGGTAGTCGCTTTGT 292
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 240 AGGATCTGCCTTTCATTTCATTAAAGGGACTTACAATTCTCCTAAAGGTAGTCGCTTTGT 299
Query 293 TGGAGGAACACAAGCTGTGAGCATGAATGCTCCTCGT-CTTGGAGGCAGTTTTGCTGTAT 351
||||||||||||| | ||||||||||| || |||||| || ||||||||||||||||| |
Sbjct 300 TGGAGGAACACAATCGGTGAGCATGAACGCACCTCGTACT-GGAGGCAGTTTTGCTGTTT 358
Query 352 GGGGAGGTTTATTCTCGACCTTTGACTGTTCCATGGTGTACTTA-GGCAGAAGGAGGATC 410
||||||||||||||||||| ||||||||| ||||||||||| || |||| ||||||||||
Sbjct 359 GGGGAGGTTTATTCTCGACATTTGACTGTACCATGGTGTACCTAAGGCAAAAGGAGGATC 418
Query 411 CGTGGAACTCTATCATCGCTGG 432
| |||||||||||||| |||||
Sbjct 419 CTTGGAACTCTATCATTGCTGG 440
Score = 60.2 bits (32), Expect = 4e-08
Identities = 39/42 (93%), Gaps = 1/42 (2%)
Strand=Plus/Plus
Query 548 GGAT-CCCGGAATGCAAGGAATGCCTGGGATGCCCGGAATGC 588
|||| |||||||||||||||||||||||||||| |||||||
Sbjct 644 GGATGCCCGGAATGCAAGGAATGCCTGGGATGCAAGGAATGC 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5