BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482736
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37430.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 880 0.0
> AT2G37430.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr2:15706357-15707224 FORWARD LENGTH=868
Length=868
Score = 880 bits (476), Expect = 0.0
Identities = 593/647 (92%), Gaps = 17/647 (3%)
Strand=Plus/Plus
Query 1 TCAATTCAGGTTTCTTTTCTAACAAGCAAAAACTCCAACCTTTAC------------TT- 47
||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TCAATTCAGGTTTCTTTTCTAACAAGCAAAAACTCCAACCTTTACTTTATTTTTGTTTTG 60
Query 48 TTTTATAACCCTCTCAAATCTTAATTTACTaaaaaaaGTATGAAGAGAGAAAGATCTGAT 107
|||| ||||||||||| ||||||| || || ||| |||||||||||||||||||||||||
Sbjct 61 TTTTGTAACCCTCTCAGATCTTAA-TT-CTCAAAGAAGTATGAAGAGAGAAAGATCTGAT 118
Query 108 TTCGAAGAATCCATCAAGAATCTAGACATTGCCAAATGTCTGATGATTCTAGCACAAACC 167
|||||||||||| |||||||| | |||||||| |||||||||||||| ||||||||||||
Sbjct 119 TTCGAAGAATCCCTCAAGAATATTGACATTGCTAAATGTCTGATGATACTAGCACAAACC 178
Query 168 TCCATGGTTAAACAGATCGGTTTGAGCCAACATACCGAGAGCCATACAAGCAACCGATTC 227
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 179 TCCATGGTCAAACAGATCGGTTTGAACCAACATACCGAGAGCCATACAAGCAACCAATTC 238
Query 228 GAATGCAAGACGTGTAACCGGAGATTTTCTTCGTTTCAAGCCCTTGGTGGTCACCGGGCA 287
|||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 239 GAATGCAAAACATGTAACAAGAGATTTTCTTCGTTTCAAGCCCTTGGTGGCCACCGGGCA 298
Query 288 AGCCATAAGAAGCCAAAGCTCACCCTTGAGCAGAAAGATGTCAAACCTCTTAGCAACAAT 347
|||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| ||
Sbjct 299 AGCCATAAGAAGCCAAAGCTCACCGTTGAGCAGAAAGATGTGAAACATCTTAGCAACGAT 358
Query 348 TACAAAGGAAATCATACGCACGAGTGTTCCATATGCGGTCAAAGTTTTGGGACCGGACAG 407
|| |||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||
Sbjct 359 TATAAAGGAAATCATTTTCACAAGTGTTCCATATGCAGTCAGAGTTTTGGGACCGGACAG 418
Query 408 GCTTTAGGTGGTCACATGAGACGGCATAGGTCAAGCATGACGGTCGAGCCATCGTTCATC 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCTTTAGGTGGTCACATGAGACGGCATAGGTCAAGCATGACGGTCGAGCCATCGTTCATC 478
Query 468 TCTCCGGTGATTCC-TACCATGCCAGTTTTGAAACGATGCAGTAGTAGCAAGAGGGTTTT 526
|||||| ||||||| | ||||||| ||||||||||||||| ||||||| |||||| ||||
Sbjct 479 TCTCCGATGATTCCAT-CCATGCCGGTTTTGAAACGATGCGGTAGTAGTAAGAGGATTTT 537
Query 527 GTGTTTGGATTTGAATCTAACTCCGTTAGAGAATGATCTTGAATATATTTTTGGGAAGAC 586
| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 538 GAGTTTGGATTTGAATCTGACTCCGTTAGAGAATGATCTTGAATATATCTTTGGGAAGAC 597
Query 587 ATTTGTCCCAAAAATAGATATGAAGTTCGCTCTTTAGtttttttttt 633
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 ATTTGTCCCAAAAATAGATATGAAGTTCGTTCTTTAGTTTTTTTTTT 644
Score = 148 bits (80), Expect = 6e-35
Identities = 83/84 (99%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 633 ttCATTTGTATTGTAATTCCTATTCTTTTAATTCTTCAAACGTTAAATGTCAACAAACTT 692
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 680 TTCATTTGTATTGTAATTCCTATTCTTTTAATTCTTCAAACGTT-AATGTCAACAAACTT 738
Query 693 CATGGTATATGTGTGGGGTCCCTA 716
||||||||||||||||||||||||
Sbjct 739 CATGGTATATGTGTGGGGTCCCTA 762
Score = 115 bits (62), Expect = 6e-25
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 717 TAT-ATGTACTCTAGAAAAAGATTTTAAACTAAATTATTTAGTTTCCATTCCTGGAACAA 775
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TATCATGTACGCTAGAAAAAGATTTTAAACTAAATTATTTAGTTTCCATTCCTGGAACAA 858
Query 776 GTACAACAT 784
|||||||||
Sbjct 859 GTACAACAT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5