BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482737
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37440.1 | Symbols: | DNAse I-like superfamily protein | ch... 2928 0.0
> AT2G37440.1 | Symbols: | DNAse I-like superfamily protein |
chr2:15718053-15722108 FORWARD LENGTH=1863
Length=1863
Score = 2928 bits (1585), Expect = 0.0
Identities = 1761/1844 (95%), Gaps = 19/1844 (1%)
Strand=Plus/Plus
Query 1 AACTTTTCTCTCTCTCCCTCACAAGTTTCTTTCTTCTCCTTC-AAAATTTAAACTGGCCC 59
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 AACTTTTCTCTCTCTCCCTCACAAGTTTCTTTCTTCTCC-TCAAAAATTTAAACTGGCCC 59
Query 60 TTCTCCATTTTCGTTCACAAAACCTTGTTTTGTATAACTTATACTCATATCCTCATCCTT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCTCCATTTTCGTTCACAAAACCTTGTTTTGTATAACTTATACTCATATCCTCATCCTT 119
Query 120 TATAATCCTCTAGATTGTGGTTCTAGAC-TCTTTACAAACAACGGTGGCGGAAAAAACGG 178
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 120 TATAATCCTCTAGATTGTGGTTCTAGACAT-TTTACAAACAACGGTGGCGGAAAAAACGG 178
Query 179 CAGGACGTTCTA-TCCACAAATATGGGGAAGATCTTGAAATCTAAGTCTTCTTGGCCAAG 237
||| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 179 CAGAACGTTCTATTACACAAATATGGGCAAGATCTTGAAATCTAAGTCTTCTTGGCCAAG 238
Query 238 AACCGTCGTGAGGAAGTGGCTAAACCTTCGTAGCGGCTCTTACGAATTTCACTCTGATTA 297
||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 239 AACCGTCGTGAGGAAATGGTTAAACCTACGTAGCGGCGCTTACGAATTTCACTCTGATTA 298
Query 298 TCCAGTCAAAGGGATGGAACCGAGGCGAAAAAGCTGATCCGACATGATCGTGCCGGAAAA 357
||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 299 CCCAGTCAAAGGGATGGAGCCAAGGCGAAAAAGCTGCTCCGACATGATCGTGCCGGAAAA 358
Query 358 TTTTCCAGGTTGGTTGGGCCAAGGAAATGGGGATTTAAAACATTCAACCGGTGAACAACA 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTTTCAAGGTTGGTTGGGCCAAGGAAATGGGGATTTAAAACATTCAACCGGTGAACAACA 418
Query 418 TGTGACACGCGTTGATGACAAGCTTGATCTTAAAATGTTCGTGGGGACATGGAACGTGGG 477
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 419 TGTGACACGCGTTGATGACAAACTTGATCTTAAAATGTTTGTGGGGACATGGAACGTGGG 478
Query 478 AGGGAAGTCGCCACATGAAGGATTAGACTTAAAAGATTGGCTTAAATCTCCCGCCGATGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 479 AGGGAAGTCGCCACATGAAGGATTAGACTTAAAAGATTGGCTTAAATCTCCGGCTGATGC 538
Query 538 CGACATTTACGTGCTAGGGTTTCAAGAAATCGTGCCGTTAAATGCCGGTAATGTACTTGG 597
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 AGACATTTACGTGCTAGGGTTTCAAGAAATCGTGCCGTTAAATGCCGGTAACGTACTTGG 598
Query 598 AGCAGAGGATAATGGTCCTGCGGCTAAGTGGTTGTCTCTTATCCGAGAAGCCTTGAACAA 657
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGCCGAGGATAATGGCCCTGCGGCTAAGTGGTTGTCTCTTATCCGAGAAGCCTTGAACAA 658
Query 658 CAACAACGACTTAGCTCAAAATGAGCTCGATCATACGAAATCATCACAACAGCCCCGTTT 717
|| |||| | ||| | | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 659 CACCAACAATTTATCGCCAAATGAGCTCGAGCATACGAAATCATCACAACAGCCCCGTTT 718
Query 718 CAGCTTCTCAGGTCTCTCAGATGATAACCGAATAATTCCATGCAATTCGACTCCTCCTCG 777
|||||||||||| |||||||||||| ||| ||| ||||||||||| |||||||||||
Sbjct 719 CAGCTTCTCAGGCCTCTCAGATGAT-ACC--CCAATCCCATGCAATTCAACTCCTCCTCG 775
Query 778 TGGGTATAGCCTTGCGGCGAGTAAACAGATGGTGGGGATATTTTTGTGTGTGTGGGTTAG 837
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CGGCTATAGCCTTGCGGCGAGTAAACAGATGGTGGGGATATTTTTGTGTGTGTGGGTTAG 835
Query 838 AGATGATCTCCGGAAACGTATAACCAACCTCAAGGTTTCATGTGTTGGCCGTGGTATCAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGATGATCTCCGGAAACGTATAACCAACCTCAAGGTTTCATGTGTTGGCCGTGGTATCAT 895
Query 898 GGGATATCTTGGAAACAAGGGCTCGGTATCGATCAGCATGTCGTTGCATGAAACAAGTTT 957
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 896 GGGATATCTTGGAAACAAGGGCTCGGTTTCGATCAGCATGTCGTTGCATGAGACAAGTCT 955
Query 958 ATGCTTCGTTTGTACCCATCTTACGTCTGGAGAAAAAGAAGGCGACGAGCTCAGAAGAAA 1017
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 956 ATGTTTCGTTTGTACGCATCTTACGTCTGGAGAAAAAGAAGGCGACGAGCTTAGAAGAAA 1015
Query 1018 CTTAGATGTGTCCGAAATATTTAAGAGGACAAGATTTTCACGTTCTTCTAAAGATTCTCG 1077
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTTAGATGTGACCGAAATATTTAAGAGGACAAGATTTTCACGTTCTTCTAAAGATTCTCG 1075
Query 1078 ACCGGAGACAATTATGGACCATGATAAAGTAATATGGCTCGGAGATTTGAATTATCGGCT 1137
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACCGGAGACAATAATGGACCATGATAAAGTAATATGGCTCGGAGATTTGAATTATCGGCT 1135
Query 1138 GAGCGCGAGCAGTGACGTGCATGAACAGCTTAGAAACCATGATTGGGAAGCACTTCTAGA 1197
|| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1136 AAGGGCGAGCAGTGACTTGCATGAACAGCTTAGAAACCATGATTGGGAATCACTTCTAGA 1195
Query 1198 GAAAGATCAGCTTAAGATAGAACAAAGAGCTGGTAGGATTTTTAAGGGATGGGAAGAAGG 1257
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1196 GAAAGATCAGCTTAAGATAGAACAAAGAGCTGGTAGAATTTTTAAGGGATGGGAAGAAGG 1255
Query 1258 GAAGATTTATTTCGCACCAACGTATAAATATCGAATAAACTCTGATAATTACGTTGTTCA 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1256 GAAGATTTATTTCGCACCAACATATAAATATCGAATAAACTCTGATAATTACGTTGTCCA 1315
Query 1318 AACCGAAAAATCAAAGGAAAAACGAAGAACTCCGGCTTGGTGTGATAGGATATTGTGGAA 1377
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1316 AACCGAAAAATCAAAGGAAAAACGAAGAACTCCGGCTTGGTGTGATCGGATATTGTGGAA 1375
Query 1378 AGGTGACGGAATGAAACAGCTTTGGTACGTGAGGGGAGAGTCGAAATTCTCGGACCATC- 1436
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1376 AGGTGACGGAATGAAACAACTTTGGTACGTGAGGGGAGAGTCGAAATTCTCGGACCA-CA 1434
Query 1437 GACCGGTTCAATCTCTATTTTTGGTACATATTGACTTGACTCAGAATCAATCGAACCGGA 1496
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1435 GACCGGTTCAATCTCTATTTTCGGTACATATTGACTTGA---AGAATCAATCGAACCGGA 1491
Query 1497 AAACTAAACCGGTTAACCAAAATCATCGTCCCAACCCGGTATTGCCTTATACGTGCCACG 1556
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1492 AAACTAAACCGGTTAACCAAAATCATCGTCCAAACCCGGTATTGACTTATACGTGCCACG 1551
Query 1557 GGAAAGTTCAAGCTGAAGAGATCTTGTTGCTCACGCGTGCACAGAGTTGTATAGATACCC 1616
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1552 GGAAAGTTCAAGCTGAAGAGATCTTGTTGCTCACACGTGCACAGAGTTGTATAGATACAC 1611
Query 1617 AACCTAGACTTATATCGTCTGCTTCCTAAtttacttttggttttttgtttctatttcttt 1676
|||||||||||| ||||| |||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1612 TACCTAGACTTATTTCGTCCGCTTCCTAATTTTCTTTTG-TTTTTTGTTTCGATTTCTTT 1670
Query 1677 ttggatgttttCATGTTGACAAAGAAGAGATGACACATGGATTCCTAGGATTGGACAATG 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TTGGATGTTTTCATGTTGACAAAGAAGAGATGACACATGGATTCCTAGGATTGGACAATG 1730
Query 1737 GAGCTTTCAAATTTGGCAAAAGCAGGATTGTTT-AAATTATTTTAATATTGGGTTA-C-- 1792
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1731 GAGCTTTCAAATTTGGCAAAAGCAGGATTGTTTTAAATTATTTTAATATTGGGTTAACGT 1790
Query 1793 CTTTTTTCCTT-GTTTCCCTCTATTAGCTAAGTTTTGGTTCAGA 1835
||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1791 CTTTTTTTGTTTGTTTCCCTCTATTAGCTAAGTTTTGGTTTAGA 1834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5