BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482740 Length=488 Score E Sequences producing significant alignments: (Bits) Value AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15... 497 3e-140 AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein ... 287 7e-77 AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19... 285 3e-76 AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 259 2e-68 AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr... 237 7e-62 > AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15736764-15737368 FORWARD LENGTH=605 Length=605 Score = 497 bits (269), Expect = 3e-140 Identities = 411/472 (87%), Gaps = 39/472 (8%) Strand=Plus/Plus Query 1 ATCTCTAATGGCGCCGAAAGCAGCGGAGAAGAAACCGGCAGAGAA-AAA--A-CC----- 51 ||||||||||||||||||||||||||||||||||||||||||||| ||| | || Sbjct 62 ATCTCTAATGGCGCCGAAAGCAGCGGAGAAGAAACCGGCAGAGAAGAAACCAGCCGGGAA 121 Query 52 AG--CC-G-GGA-AAGCT-CC---GGC-G-G-AGAAACTC-CCAAAG--G-CGGA-GAAG 94 || || | ||| || || || ||| | | ||||| || ||||| | |||| |||| Sbjct 122 AGCTCCGGCGGAGAAACTCCCAAAGGCGGAGAAGAAAATCAGCAAAGACGCCGGAGGAAG 181 Query 95 -AAG-ATCAGCA-AAGACGCCGGAGCA-AGCGTCGAGACTTACAAGATCTACATCTTCAA 150 || | || | |||| || || | |||||||||||||||||||||||||||||||| Sbjct 182 CGAGAAGAAGAAGAAGAAATCGAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAA 241 Query 151 GGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAAGCTATGGGAATTATGAA 210 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 242 GGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAAGCTATGGGGATTATGAA 301 Query 211 CAGTTTCATCAATGATATCTTCGAGAAACTTGCTCAGGAATCGTCAAAGCTCGCTAGATA 270 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 302 CAGTTTCATCAATGACATCTTCGAGAAACTTGCTCAGGAATCGTCAAAGCTCGCTAGGTA 361 Query 271 CAACAAGAAGCCGACGATTACATCGAGGGAGATTCAAACTGCTGTGAGACTTGTGTTGCC 330 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 362 CAATAAGAAGCCGACGATTACATCGAGGGAGATTCAAACCGCTGTGAGACTTGTGTTGCC 421 Query 331 TGGAGAACTCGCTAAGCATGCGGTTTCAGAAGGCACGAAGGCGGTTACCAAATTCACCAG 390 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 422 TGGAGAACTCGCTAAACATGCGGTTTCTGAAGGCACGAAGGCGGTTACCAAATTCACCAG 481 Query 391 TTAGGGTTTTTCTTTGTGTGTGTAAATTTTCGGTTTAATTGTTTGGTTTAGA 442 |||||||||| || || |||||| ||||| || ||||||||||||| Sbjct 482 TTAGGGTTTTCCT--GT------AAATTTCCGGTT-AAGTGTTTGGTTTAGA 524 > AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein | chr3:16897287-16898013 REVERSE LENGTH=727 Length=727 Score = 287 bits (155), Expect = 7e-77 Identities = 228/263 (87%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 128 ACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCT 187 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 253 ACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTATTTCA 312 Query 188 GGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG-C-TC 245 | || |||||||| |||||||||||||||||||| || |||||||||||| ||| | || Sbjct 313 AGCAAGGCTATGGGTATTATGAACAGTTTCATCAACGACATCTTCGAGAAA-TTGGCATC 371 Query 246 AGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAGATTC 305 |||||| |||||||||||||| || |||||||||||||||||||| || ||||||||| Sbjct 372 -GGAATCTTCAAAGCTCGCTAGGTATAACAAGAAGCCGACGATTACTTCTCGGGAGATTC 430 Query 306 AAACTGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAAGGC 364 | |||||||| ||||| || || ||||| || |||||||| || || ||||| ||||| Sbjct 431 AGACTGCTGTTAGACTCGTTCTT-CCTGGTGAGCTCGCTAAACACGCTGTTTCTGAAGGA 489 Query 365 ACGAAGGCGGTTACCAAATTCAC 387 || ||||| |||||||||||||| Sbjct 490 ACCAAGGCTGTTACCAAATTCAC 512 > AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19889358-19889774 FORWARD LENGTH=417 Length=417 Score = 285 bits (154), Expect = 3e-76 Identities = 229/266 (86%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 123 TCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAA 182 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |||| Sbjct 143 TCGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCTGATATCGGAA 202 Query 183 TCTCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG 242 |||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||| | Sbjct 203 TCTCCGGGAAAGCGATGGGGATCATGAACAGTTTCATCAACGACATCTTCGAGAAACTAG 262 Query 243 CTCAGGAATCGTCAAAGCTCG-CTAGATACAACAAGAAGCCGACGATTACATCGAGGGAG 301 |||||||||| || | | | |||| ||||||||||| |||||||| || || |||| Sbjct 263 CTCAGGAATCATCGC-GATTGGCTAGGTACAACAAGAAACCGACGATCACTTCTCGGGAA 321 Query 302 ATTCAAACTGCTGTGAGACTTGTGTTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAA 361 ||||| || || ||||||||||||||||||||||| ||| | || || || ||||| ||| Sbjct 322 ATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAGCTCTCGAAACACGCTGTTTCTGAA 381 Query 362 GGCACGAAGGCGGTTACCAAATTCAC 387 ||||| ||||||||||| |||||||| Sbjct 382 GGCACTAAGGCGGTTACTAAATTCAC 407 > AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | chr3:16913448-16914131 REVERSE LENGTH=684 Length=684 Score = 259 bits (140), Expect = 2e-68 Identities = 217/254 (85%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 125 GAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATC 184 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 246 GAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTATT 305 Query 185 TCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG-C 243 || | ||||||||||| |||||||||||||||||||| || ||||| |||||| ||| | Sbjct 306 TCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTGGC 364 Query 244 -TCAGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAGA 302 || ||||||||| |||||||| || || || ||||||||||||||||| || |||||| Sbjct 365 ATC-GGAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGA 423 Query 303 TTCAAACTGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAA 361 |||| |||||||| |||||||| || ||||| || || || || ||||| ||||| ||| Sbjct 424 TTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTTGCGAAACATGCTGTTTCTGAA 482 Query 362 GGCACGAAGGCGGT 375 || || |||||||| Sbjct 483 GGAACTAAGGCGGT 496 > AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr5:24127128-24127935 FORWARD LENGTH=808 Length=808 Score = 237 bits (128), Expect = 7e-62 Identities = 224/271 (83%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 122 GTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGA 181 |||||||||||||||||||||||||||||||| || || ||||||||||| ||| | ||| Sbjct 256 GTCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGA 315 Query 182 ATCTCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTT 241 ||||| | ||||| ||||| || |||||||||||||| || |||||||||||||| ||| Sbjct 316 ATCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCGAGAAGCTT 375 Query 242 GCTCAGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAG 301 ||||| || |||| ||||| || || ||||| ||||| || ||||| || || ||||| Sbjct 376 GCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCACTTCTCGGGAG 435 Query 302 ATTCAAACTGCTGTGAGACTTG-TG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAG 359 ||||| |||||||||||| ||| || || |||||||| | || |||||||| ||||| | Sbjct 436 ATTCAGACTGCTGTGAGA-TTGGTGCTT-CCTGGAGAGTTGGCGAAGCATGCCGTTTCTG 493 Query 360 AAGGCACGAAGGCGGTTACCAAATTCACCAG 390 | || || || || || || ||||||||||| Sbjct 494 AGGGGACTAAAGCCGTCACGAAATTCACCAG 524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23258410061 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5