BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482740
Length=488
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15... 497 3e-140
AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein ... 287 7e-77
AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19... 285 3e-76
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 259 2e-68
AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr... 237 7e-62
> AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15736764-15737368
FORWARD LENGTH=605
Length=605
Score = 497 bits (269), Expect = 3e-140
Identities = 411/472 (87%), Gaps = 39/472 (8%)
Strand=Plus/Plus
Query 1 ATCTCTAATGGCGCCGAAAGCAGCGGAGAAGAAACCGGCAGAGAA-AAA--A-CC----- 51
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 62 ATCTCTAATGGCGCCGAAAGCAGCGGAGAAGAAACCGGCAGAGAAGAAACCAGCCGGGAA 121
Query 52 AG--CC-G-GGA-AAGCT-CC---GGC-G-G-AGAAACTC-CCAAAG--G-CGGA-GAAG 94
|| || | ||| || || || ||| | | ||||| || ||||| | |||| ||||
Sbjct 122 AGCTCCGGCGGAGAAACTCCCAAAGGCGGAGAAGAAAATCAGCAAAGACGCCGGAGGAAG 181
Query 95 -AAG-ATCAGCA-AAGACGCCGGAGCA-AGCGTCGAGACTTACAAGATCTACATCTTCAA 150
|| | || | |||| || || | ||||||||||||||||||||||||||||||||
Sbjct 182 CGAGAAGAAGAAGAAGAAATCGAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAA 241
Query 151 GGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAAGCTATGGGAATTATGAA 210
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 GGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAAGCTATGGGGATTATGAA 301
Query 211 CAGTTTCATCAATGATATCTTCGAGAAACTTGCTCAGGAATCGTCAAAGCTCGCTAGATA 270
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 CAGTTTCATCAATGACATCTTCGAGAAACTTGCTCAGGAATCGTCAAAGCTCGCTAGGTA 361
Query 271 CAACAAGAAGCCGACGATTACATCGAGGGAGATTCAAACTGCTGTGAGACTTGTGTTGCC 330
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 362 CAATAAGAAGCCGACGATTACATCGAGGGAGATTCAAACCGCTGTGAGACTTGTGTTGCC 421
Query 331 TGGAGAACTCGCTAAGCATGCGGTTTCAGAAGGCACGAAGGCGGTTACCAAATTCACCAG 390
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 422 TGGAGAACTCGCTAAACATGCGGTTTCTGAAGGCACGAAGGCGGTTACCAAATTCACCAG 481
Query 391 TTAGGGTTTTTCTTTGTGTGTGTAAATTTTCGGTTTAATTGTTTGGTTTAGA 442
|||||||||| || || |||||| ||||| || |||||||||||||
Sbjct 482 TTAGGGTTTTCCT--GT------AAATTTCCGGTT-AAGTGTTTGGTTTAGA 524
> AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein
| chr3:16897287-16898013 REVERSE LENGTH=727
Length=727
Score = 287 bits (155), Expect = 7e-77
Identities = 228/263 (87%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 128 ACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCT 187
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 253 ACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTATTTCA 312
Query 188 GGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG-C-TC 245
| || |||||||| |||||||||||||||||||| || |||||||||||| ||| | ||
Sbjct 313 AGCAAGGCTATGGGTATTATGAACAGTTTCATCAACGACATCTTCGAGAAA-TTGGCATC 371
Query 246 AGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAGATTC 305
|||||| |||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct 372 -GGAATCTTCAAAGCTCGCTAGGTATAACAAGAAGCCGACGATTACTTCTCGGGAGATTC 430
Query 306 AAACTGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAAGGC 364
| |||||||| ||||| || || ||||| || |||||||| || || ||||| |||||
Sbjct 431 AGACTGCTGTTAGACTCGTTCTT-CCTGGTGAGCTCGCTAAACACGCTGTTTCTGAAGGA 489
Query 365 ACGAAGGCGGTTACCAAATTCAC 387
|| ||||| ||||||||||||||
Sbjct 490 ACCAAGGCTGTTACCAAATTCAC 512
> AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19889358-19889774
FORWARD LENGTH=417
Length=417
Score = 285 bits (154), Expect = 3e-76
Identities = 229/266 (86%), Gaps = 2/266 (1%)
Strand=Plus/Plus
Query 123 TCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAA 182
||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 143 TCGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCTGATATCGGAA 202
Query 183 TCTCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG 242
|||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||| |
Sbjct 203 TCTCCGGGAAAGCGATGGGGATCATGAACAGTTTCATCAACGACATCTTCGAGAAACTAG 262
Query 243 CTCAGGAATCGTCAAAGCTCG-CTAGATACAACAAGAAGCCGACGATTACATCGAGGGAG 301
|||||||||| || | | | |||| ||||||||||| |||||||| || || ||||
Sbjct 263 CTCAGGAATCATCGC-GATTGGCTAGGTACAACAAGAAACCGACGATCACTTCTCGGGAA 321
Query 302 ATTCAAACTGCTGTGAGACTTGTGTTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAA 361
||||| || || ||||||||||||||||||||||| ||| | || || || ||||| |||
Sbjct 322 ATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAGCTCTCGAAACACGCTGTTTCTGAA 381
Query 362 GGCACGAAGGCGGTTACCAAATTCAC 387
||||| ||||||||||| ||||||||
Sbjct 382 GGCACTAAGGCGGTTACTAAATTCAC 407
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 259 bits (140), Expect = 2e-68
Identities = 217/254 (85%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 125 GAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATC 184
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 246 GAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTATT 305
Query 185 TCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG-C 243
|| | ||||||||||| |||||||||||||||||||| || ||||| |||||| ||| |
Sbjct 306 TCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTGGC 364
Query 244 -TCAGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAGA 302
|| ||||||||| |||||||| || || || ||||||||||||||||| || ||||||
Sbjct 365 ATC-GGAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGA 423
Query 303 TTCAAACTGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAA 361
|||| |||||||| |||||||| || ||||| || || || || ||||| ||||| |||
Sbjct 424 TTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTTGCGAAACATGCTGTTTCTGAA 482
Query 362 GGCACGAAGGCGGT 375
|| || ||||||||
Sbjct 483 GGAACTAAGGCGGT 496
> AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr5:24127128-24127935
FORWARD LENGTH=808
Length=808
Score = 237 bits (128), Expect = 7e-62
Identities = 224/271 (83%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 122 GTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGA 181
|||||||||||||||||||||||||||||||| || || ||||||||||| ||| | |||
Sbjct 256 GTCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGA 315
Query 182 ATCTCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTT 241
||||| | ||||| ||||| || |||||||||||||| || |||||||||||||| |||
Sbjct 316 ATCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCGAGAAGCTT 375
Query 242 GCTCAGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAG 301
||||| || |||| ||||| || || ||||| ||||| || ||||| || || |||||
Sbjct 376 GCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCACTTCTCGGGAG 435
Query 302 ATTCAAACTGCTGTGAGACTTG-TG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAG 359
||||| |||||||||||| ||| || || |||||||| | || |||||||| ||||| |
Sbjct 436 ATTCAGACTGCTGTGAGA-TTGGTGCTT-CCTGGAGAGTTGGCGAAGCATGCCGTTTCTG 493
Query 360 AAGGCACGAAGGCGGTTACCAAATTCACCAG 390
| || || || || || || |||||||||||
Sbjct 494 AGGGGACTAAAGCCGTCACGAAATTCACCAG 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23258410061
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5