BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482744
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37500.1 | Symbols: | arginine biosynthesis protein ArgJ fa... 2555 0.0
> AT2G37500.1 | Symbols: | arginine biosynthesis protein ArgJ
family | chr2:15739783-15742838 REVERSE LENGTH=1677
Length=1677
Score = 2555 bits (1383), Expect = 0.0
Identities = 1525/1596 (96%), Gaps = 0/1596 (0%)
Strand=Plus/Plus
Query 1 CCAACGGCGACTTTTCTCTGTCACTGTGACTTTCCTCTAGGGTTTAAGGTTTGATTTTCA 60
||||| | || |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 6 CCAACAGTGAATTTTCTCTGTTACTGTGACTTTCCTCTAGGGTTTAAGGTTTGATTTTCA 65
Query 61 GACAAAAGTACAAACAATCAATCTGCAGCTTAAGGTTTGATTTTCAGACAAAAGTACAAT 120
|||||||||| || |||||| |||| | ||||||||||||| ||||||||||||||||||
Sbjct 66 GACAAAAGTATAATCAATCATTCTGTAACTTAAGGTTTGATATTCAGACAAAAGTACAAT 125
Query 121 CAATTCGGCGATTGGTCTCCGAAGATGCATTCTTGTTTTCAAACTCACTTCGTCTCCTTC 180
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| || |||
Sbjct 126 CAATTCGGCGATTGGTCTCAGAAGATGCATTCTTGTTCTCATACTCACTTCGTATCTTTC 185
Query 181 AAGCTTCCTCATTTTTTCGCGCCTAAGAGTTTTGTGGCATCTTCACGGAGAGAATTAAGA 240
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 186 AAGCTTCCTCATTTCTTCGCGCCTAAGAGTTTTGTGGTGTCTTCACGGAGAGAATTAAGA 245
Query 241 GTGTTCGCAGTGGCAACCACCGTGGAGGAGGCGTCTGGTTACATACCAGCGGCTCCGATT 300
||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 246 GTGTTCGCAGTGGCAACTACCGTCGAGGAGGCGTCCGGTAACATACCAGCGGCTCCGATT 305
Query 301 TCTCTACCTGAAGGGTCATGGAAACAGATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTT 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTCTACCTCAAGGGTCATGGAAACAGATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTT 365
Query 361 AAAGCTGCTGGTATGTATGCTGGTTTACGAGCTGCAGGGAAGAAACCTGATCTTGCTCTT 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 366 AAAGCTGCTGGTATGTATGCTGGATTACGAGCTGCAGGGAAGAAACCTGATCTCGCTCTT 425
Query 421 GTAACCTGTGATGTCGAAGCTGTAGCTGCAGGGGTGTTTACTACTAATGTGGTTGCTGCT 480
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 426 GTAACATGTGATGTCGAAGCTGTAGCTGCAGGTGTGTTTACTACTAATGTGGTTGCTGCT 485
Query 481 GCTCCTGTAGTTTACTGCAAAAAAGTTCTTGAGACTTCGAAAACGGCTCGTGCAGTGTTG 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GCTCCTGTAGTTTACTGTAAAAAAGTTCTTGAGACTTCGAAAACGGCTCGTGCAGTGTTG 545
Query 541 ATCAATGCCGGTCAGGCCAATGCAGCTACGGGTGATGCCGGTTACCAAGATATGTTAGAT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 546 ATCAATGCCGGTCAGGCCAATGCAGCTACGGGTGATGCTGGTTACCAAGATATGTTAGAT 605
Query 601 TGTGTTGGATCTATTGCGACGCTACTTAAAGTGAAGCCAGAACAAGTGTTGATTGAGTCA 660
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 606 TGTGTTGGATCTATTGCGACGCTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCA 665
Query 661 ACTGGTGTTATTGGTCAGAGAATAAAAAAGGAAGAGCTTCTCCAAGCACTTCCAACCCTA 720
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 666 ACTGGTGTTATCGGTCAGAGAATAAAAAAGGAAGAGCTTCTCCACGCACTTCCAACTCTA 725
Query 721 GTCAACTCGAGATCAGACGCTGTTGAAGAGGCAGACTCTGCTGCTGTAGCAATCACAACA 780
|||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||||
Sbjct 726 GTCAACTCGAGATCAGACTCTGTGGAAGAGGCAGATTCTGCTGCTGTAGCTATCACAACA 785
Query 781 ACAGATCTTGTAAGCAAGAGTGTTGCAATTGAATCACAGGTTGGTGGAATCATGATTCGA 840
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 786 ACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGGTTGGTGGAATCAAAATTCGA 845
Query 841 GTTGGTGGTATGGCAAAAGGCTCCGGGATGATCAATCCAAATATGGCAACTATGTTAGGT 900
|||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 846 GTTGGTGGTATGGCTAAAGGCTCCGGGATGATCCATCCCAATATGGCAACTATGTTAGGT 905
Query 901 GTCATCACAACAGATGCACTAGTTGAAAGTGATATCTGGAGAAAGATGGTAAAGGTTGCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GTCATCACAACAGATGCACTAGTTGAAAGTGATATCTGGAGAAAGATGGTAAAGGTTGCA 965
Query 961 GTAAACCGAAGTTTCAACCAGATCACTGTAGATGGAGACACAAGTACTAACGACACAGTC 1020
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 966 GTTAACCGAAGTTTCAACCAGATCACTGTAGATGGAGACACGAGTACTAACGACACAGTC 1025
Query 1021 ATTGCTTTAGCGAGCGGGCTATCTGGATCACCTTCTATATCATCTTTGAACTGTAACGAA 1080
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1026 ATTGCTTTAGCTAGCGGGCTATCTGGATCACCTTCTATATCATCTTTGAACTGTAAAGAA 1085
Query 1081 GCTTCACAGCTTCAGGCATGCCTCGATGCGGTGATGCAAGGACTGGCTAAATCAATAGCT 1140
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1086 GCTGCACAGCTTCAGGCATGCCTCGATGCGGTGATGCAAGGACTTGCTAAATCAATAGCT 1145
Query 1141 TGGGATGGTGAAGGTGCTACATGTCTCATCGAGGTAACTGTTAAAGGAACAGAAACTGAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TGGGATGGTGAAGGTGCTACATGTCTCATCGAGGTAACTGTTAAAGGAACAGAAACTGAA 1205
Query 1201 GCAGAAGCAGCGAAAATTGCACGCTCGGTGGCTTCCTCTTCCCTGGTCAAAGCAGCTGTT 1260
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1206 GCAGAAGCAGCGAAAATTGCACGCTCTGTGGCTTCCTCTTCCCTGGTCAAAGCAGCTGTT 1265
Query 1261 TATGGGAGAGATCCAAACTGGGGACGCATAGCTGCAGCTGCTGGCTATGCCGGGGTTTCT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TATGGGAGAGATCCAAACTGGGGACGCATAGCTGCAGCTGCTGGCTATGCCGGGGTTTCT 1325
Query 1321 TTCCAGATGGATGAGCTGAAGATATCGCTCGGAGAGTTCTCACTCATGGAGAGTGGTCAA 1380
|| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1326 TTTCAGATGGATAAGCTGAAGATATCCCTCGGCGAGTTCTCACTCATGGAGAGTGGTCAA 1385
Query 1381 CCTCTTCCGTTTGACAGGGATGGAGCCAGTAACTACCTCAGGAAAACTGGTGAGGTTCAC 1440
|||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct 1386 CCTCTTCCGTTTGACAGGGATGGAGCAAGTAACTACCTCAAGAAAACCGGTGAGGTTCAC 1445
Query 1441 GGAACGGTTACAATCGATATATCAGTAGGCGAAGGTGCAGTCATCGGAAAGGCATGGGGA 1500
||||| ||||||||||||||||| ||||| || ||||||| |||||||||||||||||||
Sbjct 1446 GGAACAGTTACAATCGATATATCCGTAGGTGATGGTGCAGCCATCGGAAAGGCATGGGGA 1505
Query 1501 TGCGATCTTAGCTATGACTATGTCAAGATCAACGCTGAGTACACTTCATAGGACTGAGAC 1560
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1506 TGCGATCTTAGCTATGACTATGTCAAGATCAACGCTGAGTACACCTCATAGAACTGAGAC 1565
Query 1561 CAAGAGACGGAGTTTCATATACTATTGTTGTGTTAT 1596
| |||||| ||||||||| |||| || |||||||||
Sbjct 1566 CGAGAGACAGAGTTTCATTTACTGTTTTTGTGTTAT 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5