BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482750
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37550.1 | Symbols: ASP1, AGD7 | ARF-GAP domain 7 | chr2:157... 2809 0.0
AT2G37555.1 | Symbols: | other RNA | chr2:15756722-15758279 FO... 1336 0.0
> AT2G37550.1 | Symbols: ASP1, AGD7 | ARF-GAP domain 7 | chr2:15755097-15757601
REVERSE LENGTH=1882
Length=1882
Score = 2809 bits (1521), Expect = 0.0
Identities = 1750/1855 (94%), Gaps = 38/1855 (2%)
Strand=Plus/Plus
Query 1 CACGTGACAAAAACACGCACAAAACTA-TCAAAGTTACCACGTTTATTAAGCAAAGACGA 59
|||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||
Sbjct 9 CACGTGACAAAAACACGCACAAAATTATTC-AAGTTACCACGTTTATTAAGCAAA-ACGA 66
Query 60 TTAAGCCaaaaaaaaaCGCATCAGTCTCATCAGAATCCGGAACCTGGATCAGATCTATTC 119
|| |||| ||||||| | | | |||||||||| ||||||||||||||||||| ||
Sbjct 67 TTGAGCC--AAAAAAA---A-C-G---CATCAGAATCTGGAACCTGGATCAGATCTAGTC 116
Query 120 GGGTCGGGTCATATCGGAAAACCGGCAACATAATGGCGGCGGCGAGACGATTACGGACGC 179
| |||||| |||||| | ||||||| |||||||| ||||||||||||||||||||||
Sbjct 117 -AG--GGGTCAGATCGGAGAGCCGGCAATATAATGGCAGCGGCGAGACGATTACGGACGC 173
Query 180 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 233
Query 240 CATCGGTTTCATATGGAATCTTCATGTGCTTGGAGTGCTCCGGTAAGCACCGTGGCTTAG 299
||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 234 CATCGATTTCATATGGAATCTTCATGTGCTTGGAATGCTCCGGTAAGCACCGTGGTTTAG 293
Query 300 GTGTTCACATCTCCTTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GTGTTCACATCTCATTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 353
Query 360 AGAAAATGGACGCCGGAGGCAACGAGCGTCTCAACAAATTTCTGGCTCAGTACGGGATCT 419
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 354 AGAAAATGGACGCTGGAGGCAACGAGCGTCTCAACAATTTTCTCGCTCAGTACGGGATCT 413
Query 420 CTAAAGAGACCGATATCATCGCAAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 479
| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 414 CGAAAGAGACTGATATCATCTCCAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 473
Query 480 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 533
Query 540 TTGGTGGTGGAGGGATGATTAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 599
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTGGTGGTGGATTGATGAATAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 593
Query 600 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTCAGATCTACGGATATGA-GA 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 594 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTTAGATCTACGGATATGAGGA 653
Query 659 CGGAATCAATCGGCGAGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCAAAGTCG 718
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 654 -GGAATCAATCGGCGGGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCGAAGTCG 712
Query 719 AAATCGTCGGAGGATATATACTCTCGGTCTCAGCTGGAAGCTTCGGCGGCGAATAAGGAG 778
|||||||| ||||||||||| || |||||||||||||| || ||||||||||||||||||
Sbjct 713 AAATCGTCTGAGGATATATATTCACGGTCTCAGCTGGAGGCGTCGGCGGCGAATAAGGAG 772
Query 779 AGTTTCTTTGCGAAGAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 838
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGTTTCTTTGCGAAAAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 832
Query 839 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCCGGTCCAGCTCCGAGAAGCAATCAA 898
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 833 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCAGGTCCAGCTCCGAGAAGCAATCAA 892
Query 899 CAGAGTGGTGGTGGTGATGTTTTCTCTGTTATGTCTGAGGGTTTTGGAAGATTGTCTCTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CAGAGTGGTGGTGGTGATGTTTTCTCTGTTATGTCTGAGGGTTTTGGAAGATTGTCTCTT 952
Query 959 GTTGCTGCATCAGCTGCGAATGTTGTTCAAACTGGAACCATGGAGTTTACTTCCAAGGTT 1018
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 953 GTTGCTGCATCAGCTGCAAATGTTGTTCAGACTGGAACCATGGAGTTTACTTCCAAGGTC 1012
Query 1019 AAAGAAGGTGGCTTAGATCACACGGTCAGTGAGACAGTTAATGTTGTTGCGAGTAAGACA 1078
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1013 AAAGAAGGTGGCTTAGATCAGACGGTCAGTGAGACTGTTAATGTTGTTGCGAGTAAGACA 1072
Query 1079 ACAGAGATAGGACAGAGGACATGGGGGATCATGAAAGGAGTAATGGCAATTGCCTCACAA 1138
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1073 ACAGAGATAGGACAGAGGACATGGGGGATCATGAAAGGAGTGATGGCAATTGCCTCACAA 1132
Query 1139 AAGGTTGAAGAGTTCACTAAAGAAGAAGCATCAACTTGGAATCAACAGAATAAAACCGAG 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1133 AAGGTTGAAGAGTTCACTAAAGAAGAAGCATCAACTTGGAATCAACAGAATAAAACTGAG 1192
Query 1199 GGCAACGGTTACTACCAGAACTCTGGGATTGGAAACAAAACAGCAAATTCATCTTTTGGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GGCAACGGTTACTACCAGAACTCTGGGATTGGAAACAAAACAGCAAATTCATCTTTTGGA 1252
Query 1259 GGATCACAATCATCATCAAGTGGTCACAACAACAGTTATCGTAACTCGAATTCTTGGGAT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GGATCACAATCATCATCAAGTGGTCACAACAACAGTTATCGTAACTCGAATTCTTGGGAT 1312
Query 1319 GACTGGGGAGAAGAGAACAATACCAAAAAGGAAGCAGCACCAAAGGTGACGACTTCTAAT 1378
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1313 GACTGGGGAGAAGAGAACAATAGCAAAAAGGAAGCAGCACCAAAGGTGTCGACTTCTAAT 1372
Query 1379 GATGACGACGACGGCGGTTGGGCTGGTTGGGATGATAATGATGCTAAAGATGATGATTTT 1438
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GATGATGACGACGGCGGTTGGGCTGGTTGGGATGATAATGATGCTAAAGATGATGATTTC 1432
Query 1439 TATTATCAGAGTGCAAGCGAGAAGAAATCTGTAGGTCACAATGGGAAATCAGACACTGCT 1498
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TATTATCAGCCTGCAAGCGATAAGAAATCTGTAGGTCACAATGGGAAATCAGACACTGCT 1492
Query 1499 TGGACCGGTGGAGGTTTTCTCTAGCGGTATTTCAGGATAAT--TG--T-A--------CA 1545
||||||||||||||||||||||| |||| || ||||||||| || | | ||
Sbjct 1493 TGGACCGGTGGAGGTTTTCTCTAACGGTGTTACAGGATAATGGTGAATGAAGTTTGTACA 1552
Query 1546 ATTAAGGAAAAGCAGAACCTTGTGGTCTTCTCGTGCTCTGTCACAAGAGAGAGCAGAGTG 1605
||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1553 ATTAAGGAATAGCAGAGCCT-GTGGTCTTCTCGTGCTCTGTCACAAGAGAGAGCAGAGTG 1611
Query 1606 GTCATCTCAACCATTAAAGCCATCAAAGGTTCTT-CTTTCCACATATCAATTGCTTGGCG 1664
||||||||||||||||| |||| || ||| ||| |||| ||||||||||||||||||||
Sbjct 1612 GTCATCTCAACCATTAA-GCCACCACTGGT-CTTTCTTTTCACATATCAATTGCTTGGCG 1669
Query 1665 TTCAATCAAATCGATCGTCATTATTTGTTCTTCTACAATATATA--GTTTCATTTAT-AT 1721
|||||||||||||||||||| ||||||||||||||||||||||| |||| ||| | ||
Sbjct 1670 TTCAATCAAATCGATCGTCACTATTTGTTCTTCTACAATATATATAGTTTTTTTTTTTAT 1729
Query 1722 TTGTACAAGCTTCACAGTCACAGAGGACTGCTTACTAAACTATTCGGGTTAGTCTTCAGC 1781
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1730 TTGTACAAGTTTCACAGTCACAGAGGATTGCTTGCTAAACTATTCGGGTTAGTCTTCAGC 1789
Query 1782 TCtttttttGAGATTCAAACTTTTATTTTTCTTCAAATCTGTAATGACCACAAAA 1836
||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1790 TCTTTTTTTGAGATTCAAACTTTTATTTTTCTTGAAATTTGTAATGATCACAAAA 1844
> AT2G37555.1 | Symbols: | other RNA | chr2:15756722-15758279
FORWARD LENGTH=1468
Length=1468
Score = 1336 bits (723), Expect = 0.0
Identities = 836/888 (94%), Gaps = 18/888 (2%)
Strand=Plus/Minus
Query 1 CACGTGACAAAAACACGCACAAAACTA-TCAAAGTTACCACGTTTATTAAGCAAAGACGA 59
|||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||
Sbjct 872 CACGTGACAAAAACACGCACAAAATTATTC-AAGTTACCACGTTTATTAAGCAAA-ACGA 815
Query 60 TTAAGCCaaaaaaaaaCGCATCAGTCTCATCAGAATCCGGAACCTGGATCAGATCTATTC 119
|| |||| ||||||| | | | |||||||||| ||||||||||||||||||| ||
Sbjct 814 TTGAGCC--AAAAAAA---A-C-G---CATCAGAATCTGGAACCTGGATCAGATCTAGTC 765
Query 120 GGGTCGGGTCATATCGGAAAACCGGCAACATAATGGCGGCGGCGAGACGATTACGGACGC 179
| |||||| |||||| | ||||||| |||||||| ||||||||||||||||||||||
Sbjct 764 -AG--GGGTCAGATCGGAGAGCCGGCAATATAATGGCAGCGGCGAGACGATTACGGACGC 708
Query 180 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 648
Query 240 CATCGGTTTCATATGGAATCTTCATGTGCTTGGAGTGCTCCGGTAAGCACCGTGGCTTAG 299
||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 647 CATCGATTTCATATGGAATCTTCATGTGCTTGGAATGCTCCGGTAAGCACCGTGGTTTAG 588
Query 300 GTGTTCACATCTCCTTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GTGTTCACATCTCATTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 528
Query 360 AGAAAATGGACGCCGGAGGCAACGAGCGTCTCAACAAATTTCTGGCTCAGTACGGGATCT 419
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 527 AGAAAATGGACGCTGGAGGCAACGAGCGTCTCAACAATTTTCTCGCTCAGTACGGGATCT 468
Query 420 CTAAAGAGACCGATATCATCGCAAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 479
| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 467 CGAAAGAGACTGATATCATCTCCAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 408
Query 480 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 348
Query 540 TTGGTGGTGGAGGGATGATTAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 599
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TTGGTGGTGGATTGATGAATAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 288
Query 600 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTCAGATCTACGGATATGAG-A 658
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 287 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTTAGATCTACGGATATGAGGA 228
Query 659 CGGAATCAATCGGCGAGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCAAAGTCG 718
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 227 -GGAATCAATCGGCGGGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCGAAGTCG 169
Query 719 AAATCGTCGGAGGATATATACTCTCGGTCTCAGCTGGAAGCTTCGGCGGCGAATAAGGAG 778
|||||||| ||||||||||| || |||||||||||||| || ||||||||||||||||||
Sbjct 168 AAATCGTCTGAGGATATATATTCACGGTCTCAGCTGGAGGCGTCGGCGGCGAATAAGGAG 109
Query 779 AGTTTCTTTGCGAAGAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 838
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 AGTTTCTTTGCGAAAAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 49
Query 839 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCCGGTCCAGCTCCG 886
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 48 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCAGGTCCAGCTCCG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5