BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482750 Length=1836 Score E Sequences producing significant alignments: (Bits) Value AT2G37550.1 | Symbols: ASP1, AGD7 | ARF-GAP domain 7 | chr2:157... 2809 0.0 AT2G37555.1 | Symbols: | other RNA | chr2:15756722-15758279 FO... 1336 0.0 > AT2G37550.1 | Symbols: ASP1, AGD7 | ARF-GAP domain 7 | chr2:15755097-15757601 REVERSE LENGTH=1882 Length=1882 Score = 2809 bits (1521), Expect = 0.0 Identities = 1750/1855 (94%), Gaps = 38/1855 (2%) Strand=Plus/Plus Query 1 CACGTGACAAAAACACGCACAAAACTA-TCAAAGTTACCACGTTTATTAAGCAAAGACGA 59 |||||||||||||||||||||||| || || |||||||||||||||||||||||| |||| Sbjct 9 CACGTGACAAAAACACGCACAAAATTATTC-AAGTTACCACGTTTATTAAGCAAA-ACGA 66 Query 60 TTAAGCCaaaaaaaaaCGCATCAGTCTCATCAGAATCCGGAACCTGGATCAGATCTATTC 119 || |||| ||||||| | | | |||||||||| ||||||||||||||||||| || Sbjct 67 TTGAGCC--AAAAAAA---A-C-G---CATCAGAATCTGGAACCTGGATCAGATCTAGTC 116 Query 120 GGGTCGGGTCATATCGGAAAACCGGCAACATAATGGCGGCGGCGAGACGATTACGGACGC 179 | |||||| |||||| | ||||||| |||||||| |||||||||||||||||||||| Sbjct 117 -AG--GGGTCAGATCGGAGAGCCGGCAATATAATGGCAGCGGCGAGACGATTACGGACGC 173 Query 180 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 233 Query 240 CATCGGTTTCATATGGAATCTTCATGTGCTTGGAGTGCTCCGGTAAGCACCGTGGCTTAG 299 ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 234 CATCGATTTCATATGGAATCTTCATGTGCTTGGAATGCTCCGGTAAGCACCGTGGTTTAG 293 Query 300 GTGTTCACATCTCCTTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 359 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 GTGTTCACATCTCATTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 353 Query 360 AGAAAATGGACGCCGGAGGCAACGAGCGTCTCAACAAATTTCTGGCTCAGTACGGGATCT 419 ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 354 AGAAAATGGACGCTGGAGGCAACGAGCGTCTCAACAATTTTCTCGCTCAGTACGGGATCT 413 Query 420 CTAAAGAGACCGATATCATCGCAAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 479 | |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 414 CGAAAGAGACTGATATCATCTCCAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 473 Query 480 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 533 Query 540 TTGGTGGTGGAGGGATGATTAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 599 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TTGGTGGTGGATTGATGAATAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 593 Query 600 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTCAGATCTACGGATATGA-GA 658 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 594 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTTAGATCTACGGATATGAGGA 653 Query 659 CGGAATCAATCGGCGAGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCAAAGTCG 718 |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 654 -GGAATCAATCGGCGGGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCGAAGTCG 712 Query 719 AAATCGTCGGAGGATATATACTCTCGGTCTCAGCTGGAAGCTTCGGCGGCGAATAAGGAG 778 |||||||| ||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct 713 AAATCGTCTGAGGATATATATTCACGGTCTCAGCTGGAGGCGTCGGCGGCGAATAAGGAG 772 Query 779 AGTTTCTTTGCGAAGAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 838 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 AGTTTCTTTGCGAAAAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 832 Query 839 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCCGGTCCAGCTCCGAGAAGCAATCAA 898 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 833 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCAGGTCCAGCTCCGAGAAGCAATCAA 892 Query 899 CAGAGTGGTGGTGGTGATGTTTTCTCTGTTATGTCTGAGGGTTTTGGAAGATTGTCTCTT 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 CAGAGTGGTGGTGGTGATGTTTTCTCTGTTATGTCTGAGGGTTTTGGAAGATTGTCTCTT 952 Query 959 GTTGCTGCATCAGCTGCGAATGTTGTTCAAACTGGAACCATGGAGTTTACTTCCAAGGTT 1018 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 953 GTTGCTGCATCAGCTGCAAATGTTGTTCAGACTGGAACCATGGAGTTTACTTCCAAGGTC 1012 Query 1019 AAAGAAGGTGGCTTAGATCACACGGTCAGTGAGACAGTTAATGTTGTTGCGAGTAAGACA 1078 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1013 AAAGAAGGTGGCTTAGATCAGACGGTCAGTGAGACTGTTAATGTTGTTGCGAGTAAGACA 1072 Query 1079 ACAGAGATAGGACAGAGGACATGGGGGATCATGAAAGGAGTAATGGCAATTGCCTCACAA 1138 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1073 ACAGAGATAGGACAGAGGACATGGGGGATCATGAAAGGAGTGATGGCAATTGCCTCACAA 1132 Query 1139 AAGGTTGAAGAGTTCACTAAAGAAGAAGCATCAACTTGGAATCAACAGAATAAAACCGAG 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1133 AAGGTTGAAGAGTTCACTAAAGAAGAAGCATCAACTTGGAATCAACAGAATAAAACTGAG 1192 Query 1199 GGCAACGGTTACTACCAGAACTCTGGGATTGGAAACAAAACAGCAAATTCATCTTTTGGA 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1193 GGCAACGGTTACTACCAGAACTCTGGGATTGGAAACAAAACAGCAAATTCATCTTTTGGA 1252 Query 1259 GGATCACAATCATCATCAAGTGGTCACAACAACAGTTATCGTAACTCGAATTCTTGGGAT 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1253 GGATCACAATCATCATCAAGTGGTCACAACAACAGTTATCGTAACTCGAATTCTTGGGAT 1312 Query 1319 GACTGGGGAGAAGAGAACAATACCAAAAAGGAAGCAGCACCAAAGGTGACGACTTCTAAT 1378 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1313 GACTGGGGAGAAGAGAACAATAGCAAAAAGGAAGCAGCACCAAAGGTGTCGACTTCTAAT 1372 Query 1379 GATGACGACGACGGCGGTTGGGCTGGTTGGGATGATAATGATGCTAAAGATGATGATTTT 1438 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 GATGATGACGACGGCGGTTGGGCTGGTTGGGATGATAATGATGCTAAAGATGATGATTTC 1432 Query 1439 TATTATCAGAGTGCAAGCGAGAAGAAATCTGTAGGTCACAATGGGAAATCAGACACTGCT 1498 ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1433 TATTATCAGCCTGCAAGCGATAAGAAATCTGTAGGTCACAATGGGAAATCAGACACTGCT 1492 Query 1499 TGGACCGGTGGAGGTTTTCTCTAGCGGTATTTCAGGATAAT--TG--T-A--------CA 1545 ||||||||||||||||||||||| |||| || ||||||||| || | | || Sbjct 1493 TGGACCGGTGGAGGTTTTCTCTAACGGTGTTACAGGATAATGGTGAATGAAGTTTGTACA 1552 Query 1546 ATTAAGGAAAAGCAGAACCTTGTGGTCTTCTCGTGCTCTGTCACAAGAGAGAGCAGAGTG 1605 ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1553 ATTAAGGAATAGCAGAGCCT-GTGGTCTTCTCGTGCTCTGTCACAAGAGAGAGCAGAGTG 1611 Query 1606 GTCATCTCAACCATTAAAGCCATCAAAGGTTCTT-CTTTCCACATATCAATTGCTTGGCG 1664 ||||||||||||||||| |||| || ||| ||| |||| |||||||||||||||||||| Sbjct 1612 GTCATCTCAACCATTAA-GCCACCACTGGT-CTTTCTTTTCACATATCAATTGCTTGGCG 1669 Query 1665 TTCAATCAAATCGATCGTCATTATTTGTTCTTCTACAATATATA--GTTTCATTTAT-AT 1721 |||||||||||||||||||| ||||||||||||||||||||||| |||| ||| | || Sbjct 1670 TTCAATCAAATCGATCGTCACTATTTGTTCTTCTACAATATATATAGTTTTTTTTTTTAT 1729 Query 1722 TTGTACAAGCTTCACAGTCACAGAGGACTGCTTACTAAACTATTCGGGTTAGTCTTCAGC 1781 ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1730 TTGTACAAGTTTCACAGTCACAGAGGATTGCTTGCTAAACTATTCGGGTTAGTCTTCAGC 1789 Query 1782 TCtttttttGAGATTCAAACTTTTATTTTTCTTCAAATCTGTAATGACCACAAAA 1836 ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct 1790 TCTTTTTTTGAGATTCAAACTTTTATTTTTCTTGAAATTTGTAATGATCACAAAA 1844 > AT2G37555.1 | Symbols: | other RNA | chr2:15756722-15758279 FORWARD LENGTH=1468 Length=1468 Score = 1336 bits (723), Expect = 0.0 Identities = 836/888 (94%), Gaps = 18/888 (2%) Strand=Plus/Minus Query 1 CACGTGACAAAAACACGCACAAAACTA-TCAAAGTTACCACGTTTATTAAGCAAAGACGA 59 |||||||||||||||||||||||| || || |||||||||||||||||||||||| |||| Sbjct 872 CACGTGACAAAAACACGCACAAAATTATTC-AAGTTACCACGTTTATTAAGCAAA-ACGA 815 Query 60 TTAAGCCaaaaaaaaaCGCATCAGTCTCATCAGAATCCGGAACCTGGATCAGATCTATTC 119 || |||| ||||||| | | | |||||||||| ||||||||||||||||||| || Sbjct 814 TTGAGCC--AAAAAAA---A-C-G---CATCAGAATCTGGAACCTGGATCAGATCTAGTC 765 Query 120 GGGTCGGGTCATATCGGAAAACCGGCAACATAATGGCGGCGGCGAGACGATTACGGACGC 179 | |||||| |||||| | ||||||| |||||||| |||||||||||||||||||||| Sbjct 764 -AG--GGGTCAGATCGGAGAGCCGGCAATATAATGGCAGCGGCGAGACGATTACGGACGC 708 Query 180 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 648 Query 240 CATCGGTTTCATATGGAATCTTCATGTGCTTGGAGTGCTCCGGTAAGCACCGTGGCTTAG 299 ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 647 CATCGATTTCATATGGAATCTTCATGTGCTTGGAATGCTCCGGTAAGCACCGTGGTTTAG 588 Query 300 GTGTTCACATCTCCTTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 359 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587 GTGTTCACATCTCATTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 528 Query 360 AGAAAATGGACGCCGGAGGCAACGAGCGTCTCAACAAATTTCTGGCTCAGTACGGGATCT 419 ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 527 AGAAAATGGACGCTGGAGGCAACGAGCGTCTCAACAATTTTCTCGCTCAGTACGGGATCT 468 Query 420 CTAAAGAGACCGATATCATCGCAAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 479 | |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 467 CGAAAGAGACTGATATCATCTCCAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 408 Query 480 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 348 Query 540 TTGGTGGTGGAGGGATGATTAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 599 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 347 TTGGTGGTGGATTGATGAATAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 288 Query 600 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTCAGATCTACGGATATGAG-A 658 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 287 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTTAGATCTACGGATATGAGGA 228 Query 659 CGGAATCAATCGGCGAGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCAAAGTCG 718 |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 227 -GGAATCAATCGGCGGGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCGAAGTCG 169 Query 719 AAATCGTCGGAGGATATATACTCTCGGTCTCAGCTGGAAGCTTCGGCGGCGAATAAGGAG 778 |||||||| ||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct 168 AAATCGTCTGAGGATATATATTCACGGTCTCAGCTGGAGGCGTCGGCGGCGAATAAGGAG 109 Query 779 AGTTTCTTTGCGAAGAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 838 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 AGTTTCTTTGCGAAAAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 49 Query 839 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCCGGTCCAGCTCCG 886 ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 48 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCAGGTCCAGCTCCG 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90862986450 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5