BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482752
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37560.1 | Symbols: ORC2, ATORC2 | origin recognition comple... 1821 0.0
> AT2G37560.1 | Symbols: ORC2, ATORC2 | origin recognition complex
second largest subunit 2 | chr2:15758645-15761262 FORWARD
LENGTH=1507
Length=1507
Score = 1821 bits (986), Expect = 0.0
Identities = 1093/1145 (95%), Gaps = 6/1145 (1%)
Strand=Plus/Plus
Query 30 GAAAATGGAGGACATTGAGAACATGGAAGAAGATGAGTATGGCTTCTCAAGAAACTACTT 89
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 266 GAAAATGGAGGACATTGAGAACATAGAAGAAGATGAGTATGGGTTTTCAAGAAACTACTT 325
Query 90 TTTGGCAAAAGAATTGGGTGGGGCCAGTAAGCGGTCAGCTCACAAGCTCTCTGATATTCA 149
||||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct 326 CTTGGCAAAAGAATTGGGTGGGGCGAGTAAGCGTTCTGCCCACAAGCTCTCTGATATACA 385
Query 150 TATTGTTGATGAGCAGGAGCTTAGAGAAACAG------CAATTGAAATGAAGCACGCGAA 203
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 386 TATTGTTGATGAGCAGGAGCTTAGAGAAACGGCTTCTACAATTGAAATGAAGCACTCGAA 445
Query 204 AGAGGTATCTGAGCTTATGAGTGATTACAAGACTATGTACTCAAACTGGGTCTTTGAGCT 263
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 446 AGAGATATCTGAGCTTATGAGTGATTACAAGACTATGTACTCAAAGTGGGTCTTTGAGCT 505
Query 264 CAGGTGTGGCTTTGGCCTTCTAATGTATGGCTTTGGATCTAAGAAAGCTTTAATTGAAGA 323
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 506 CAGGTGTGGCTTTGGCCTTCTAATGTATGGCTTTGGATCTAAGAAAGCTTTAGTTGAAGA 565
Query 324 TTTTGCTTCTGCTTCTTTGACTGAGTATTCGGTTATGGTCATCAATGGCTACCTCCCTTC 383
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 566 TTTTGCTTCTGCTTCTTTGACTGACTATTCTGTTGTGGTCATCAATGGCTACCTCCCTTC 625
Query 384 CGTAAATCTAAAGCAGGTTCTTTTAGCTTTAGCTGAACTTCTGTCTGAGCTTTTGAAATG 443
|||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||
Sbjct 626 CGTAAATCTAAAGCAGGTTCTTTTGGCATTAGCTGAACTTCTATCCGAGCTTTTGAAATG 685
Query 444 TAAAAGAAAGAGTTCCGGGAGTTTGTCTAAAGGTCAAGAAACATTTCCTTCACGCTCCAT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TAAAAGAAAGAGTTCCGGGAGTTTGTCTAAAGGTCAAGAAACATTTCCTTCACGCTCCAT 745
Query 504 GGATGATATTCTTTCCTTTCTACATGGTCCACAATCCGAAGATAAAGACTGCTTCATATG 563
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 746 GGATGATATTCTTTCCTTTCTACATGGTCCACAGTCTGGAGATAAAGACTGCTTCATATG 805
Query 564 CGTTGTTGTTCATAACATTGACGGCCCTGCTCTAAGAGATCCCGAATCACAACAAACTCT 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CGTTGTTGTTCATAACATTGACGGCCCTGCTCTAAGAGATCCCGAATCACAACAAACTCT 865
Query 624 TGCCCGACTTGCTTCTTGTTCACACATACGCATGGTTGCCTCTATTGACCATGTCAACTC 683
|||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 866 TGCCCGGCTTTCTTCTTGTTCACACATACGCTTGGTTGCCTCTATTGACCATGTCAACGC 925
Query 684 TCCATTATTGTGGGACAAGAAAATGGTGCACAAACAATTCAACTGGCTGTGGCACCATGT 743
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 926 TCCATTATTGTGGGACAAGAAAATGGTGCACAAACAGTTTAACTGGCTATGGCACCATGT 985
Query 744 TCCAACATTTGCACCATACAATGTCGAAGGTGTTTTCTTCCCGTTGGTTCTTGCACAGGG 803
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 986 TCCAACATTTGCACCATACAATGTCGAAGGTGTATTCTTCCCGTTGGTTCTTGCACAGGG 1045
Query 804 AAGCACAGCCCAAACCGCCAAAACAGCAGCCATTGTCTTACAGAGTTTAACACCAAATGC 863
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1046 AAGCACAGCCCAAACCGCCAAAACAGCAGCCATTGTTTTACAGAGTTTAACACCAAACGG 1105
Query 864 TCAGAATGTCTTCAAGATTCTTGCAGAGTACCAACTTTCACACCCAGATGAAGATGGCAT 923
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1106 TCAGAATGTCTTCAAGATTCTTGCTGAGTACCAACTTTCACACCCAGATGAAGATGGGAT 1165
Query 924 GCCCACTGATGATCTGTATTCAGCCTCTCGGGAACGCTTCTTTGTGAGCAGTCAAGTGAC 983
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1166 GCCCACTGATGATCTGTATTCAGCGTCTCGGGAACGCTTCTTTGTGAGCAGTCAAGTGAC 1225
Query 984 TTTGAACTCTCATCTCACGGAATTTAAAGACCACGAACTGGTTAAGACCAAGAGAAACTC 1043
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TTTAAACTCTCATCTCACGGAATTTAAAGACCACGAACTGGTTAAGACCAAGAGAAACTC 1285
Query 1044 CGATGGTCAAGAGTGTTTGAATATACCTCTCTCTTCAGATGCACTTCGACAGCTCTTGCT 1103
||||||||||||||||||||||||||| ||| |||| |||||| |||||||||| |||||
Sbjct 1286 CGATGGTCAAGAGTGTTTGAATATACCGCTCACTTCGGATGCAATTCGACAGCTTTTGCT 1345
Query 1104 TGATCTCAATCAGTAGCATGAAATTGTATCTCTGATATGATTCATTTTTATTGCTTGAAC 1163
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1346 TGATCTCAATCAGTAGCCTGAAATTGTATTTCTGATATGATTCATTTTTATTGCTTGAAC 1405
Query 1164 GAGTT 1168
|||||
Sbjct 1406 GAGTT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630225660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5