BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482761
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37640.1 | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 ... 1742 0.0
AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1... 167 2e-40
> AT2G37640.1 | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3
| Barwin-like endoglucanases superfamily protein | chr2:15787705-15789853
REVERSE LENGTH=1202
Length=1202
Score = 1742 bits (943), Expect = 0.0
Identities = 1115/1196 (93%), Gaps = 20/1196 (2%)
Strand=Plus/Plus
Query 1 CCTATCCAATACACAtctctctctctc-tctctctctcAATGACGGCGACTGCGTTT-GG 58
||||||||||||||||||||||||||| | | | |||||||||||||||||||||| ||
Sbjct 4 CCTATCCAATACACATCTCTCTCTCTCTTAT-TAACTCAATGACGGCGACTGCGTTTAGG 62
Query 59 AATCGGCTTGTGGTTGGCCGTTACGGCTTCCTTTCTCTTCACCGCTTCAAACGCCAAAAT 118
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 63 -GTCGGCTTGTGGTTGGCCGTTACGGCTTCCTTTCTCTTAACCGCAACAAACGCCAAAAT 121
Query 119 CCCCGGCGTTTACAGCGGCGGCCCGTGGCAGAACGCACACGCCACTTTCTACGGTGGTAG 178
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 122 CCCCGGCGTTTACAGTGGCGGACCGTGGCAGAATGCACACGCCACTTTCTACGGTGGCAG 181
Query 179 TGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATA 241
Query 239 CGGTGTGAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGGATTCAGCTGCGGTGC 298
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 242 CGGTGTGAACACGGCGGCGTTGAGCACTGCTTTGTTCAACAACGGATTCAGCTGTGGTGC 301
Query 299 TTGTTTTGAGATTAAGTGTACTGATGACCCGAGATGGTGTGTTCCGGGAAATCCGTCTAT 358
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 302 TTGTTTTGAGATTAAGTGTACTGATGATCCGAGATGGTGTGTTCCGGGAAATCCATCTAT 361
Query 359 TCTTGTGACGGCGACAAACTTTTGTCCACCGAATTTCGCTCAGCCGAGTGACGACGGAGG 418
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 362 TCTTGTGACGGCGACGAACTTTTGTCCGCCGAATTTTGCTCAGCCGAGTGACGACGGAGG 421
Query 419 ATGGTGTAATCCGCCGCGAGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGG 478
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GTGGTGCAATCCGCCGCGCGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGG 481
Query 479 TTTGTACCGTGCCGGCATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGG 538
| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TCTATACCGTGCAGGCATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGG 541
Query 539 AGGGATAAGATTCACAGTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AGGGATAAGATTCACAGTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGT 601
Query 599 TGCCGGCGCCGGAGATATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGCCGGCGCCGGAGATATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAG 661
Query 659 GATGAGTAGGAACTGGGGACAGAACTGGCAGTCCAACGCCGTCCTCATCGGCCAATCACT 718
||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 662 GATGAGTCGGAACTGGGGACAGAACTGGCAATCCAACGCCGTTCTCATCGGCCAATCACT 721
Query 719 CTCTTTCCGAGTCACCGCCTCTGATCGACGTTCCTCCACCTCATGGAACGTTGCTCCTTC 778
|||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |
Sbjct 722 CTCTTTCCGAGTCACCGCCTCTGACCGACGTTCTTCTACCTCATGGAACGTTGCTCCTGC 781
Query 779 CACGTGGCAGTTTGGTCAGACTTTCTCCGGCAAAAACTTCCGAGTCTGAAGTCCGAAAA- 837
||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 782 CACGTGGCAGTTTGGTCAGACTTTCTCCGGCAAAAACTTTCGAGTCTGAAATCTGAAAAA 841
Query 838 C-ACCCAACAGAATGTTAtttttattttatttttAATA-TGG--GA-GACAGAAACAAGA 892
| |||||| ||| |||| |||| ||||||||||| | | ||| || |||| ||||||||
Sbjct 842 CCACCCAAAAGA-TGTT-TTTTAATTTTATTTTTTACAATGGAAGAAGACACAAACAAGA 899
Query 893 AGAGAGATGGGACATTTTCCAGCCCTGGGTTTTCTCTTTAATTTTCTTGGGAAAATTCCG 952
||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 900 AGAGAGATGAGACATTTTCCAGCCCTGGGTTTTCCCTTTAATTTTCTTGGGAATATTCCG 959
Query 953 GTGGCTTGTGGAAAATATTTCCTTTTTTAGTATTATTATCAGCAAAATTTCTTTTTAATG 1012
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 960 GTGGCTTGTGGAAAATATTTCCGTTTTTAGTATTATTATCAGCAAAATTTCTTTT-AATC 1018
Query 1013 TTTGCGATTTAAGAGTGATTTGTTTTTCTTTTGGTTATGTT-TCCCTT-AGTTACTTCGT 1070
||||||||||| ||||||||||||||||| |||||||| || | |||| | ||| |||||
Sbjct 1019 TTTGCGATTTACGAGTGATTTGTTTTTCTCTTGGTTATTTTGTTCCTTTAATTATTTCGT 1078
Query 1071 TGGTGGCATCTTCTTTCTGCAAATAAGCCAAAGAGTGGGGATCAGTCTTATGATCGAGTC 1130
||||||||||||| |||||| |||||||||||||||| || ||||| ||||||||||
Sbjct 1079 TGGTGGCATCTTCGTTCTGCTAATAAGCCAAAGAGTGTCGAACAGTCAG-TGATCGAGTC 1137
Query 1131 GGATGGACCGTGTAATAGGCCATTGGGCCAA-TATA-T--ATATAAAATCTGAAAT 1182
| |||||||||||||| |||||||||||||| | | | ||||||||||||||||
Sbjct 1138 GAATGGACCGTGTAATGGGCCATTGGGCCAAGTTTTCTTGATATAAAATCTGAAAT 1193
> AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA
1.3, EXPA15 | expansin A15 | chr2:916854-918643 REVERSE LENGTH=1358
Length=1358
Score = 167 bits (90), Expect = 2e-40
Identities = 348/467 (75%), Gaps = 40/467 (9%)
Strand=Plus/Plus
Query 165 TTCTACGGTGGTAGTGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTG 224
||||| ||||| ||||| || || || |||||||| || || ||||| ||||||||| |
Sbjct 198 TTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTACGGGAACCTC 257
Query 225 TACAGCCAAGGATACGGTG-TGAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGG 283
||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 258 TACAGTCAAGGTTACGG-GACCAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGG 316
Query 284 A-TTCAGCTGCGGTGCTTGTTTTGAGATTAAGTGTACTGAT-GACC-CGAGATGGTGTGT 340
|| |||||||| |||||||||||||| |||||| | || ||| || | |||||| |
Sbjct 317 TCTT-AGCTGCGGGGCTTGTTTTGAGATCAAGTGT-CAGAGCGACGGCGCG-TGGTGT-T 372
Query 341 T-CCGGGAAATCCGTCTATTC-TTGTGACGGCGACAAACTTT-TGTCCACCGAATTTCGC 397
| || || | | |||| | |||| || || || || ||| ||||| || || |||
Sbjct 373 TACCTGG---T--G-CTAT-CATTGTCACAGCCACCAA-TTTCTGTCCTCCTAACAACGC 424
Query 398 TCAGCCGAGTGACGAC-GGAGGATGGTGTAATCCGCCGCGAGAGCATTTTGATCTCGC-C 455
|| || | | ||| | || || |||||||| || |||| | ||||| |||||| | |
Sbjct 425 TCTTCCCAATAACG-CTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTC 483
Query 456 ATGCCTATGTTCCTCAA-G-ATCGGTTTGTACCGTGCCGGCATTGTCCCCGTCTCCTATC 513
| |||| | || |||| | || | | |||| || || ||||||| || ||||| |
Sbjct 484 A-GCCTGTTTT--TCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCCTA-C 539
Query 514 -GCAGGGTACCTTGTC-G-GAAGATAGGAGGGATAAGATTCACAGTAAACGGATTCAGA- 569
| ||||| || ||| | ||||| ||||| |||||||||||| | ||||| | ||
Sbjct 540 AGAAGGGTTCCGTGTATGAGAAGA--GGAGGTATAAGATTCACAATCAACGG-T-CACTC 595
Query 570 T-ACTTCAATCTTGTTCT-GGTAACTAACGTTGCCGGCGCCGGAGAT 614
| ||||||| ||||| || ||| || || |||| || || ||||||
Sbjct 596 TTACTTCAACCTTGT-CTTGGTGACCAATGTTGGTGGTGCTGGAGAT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5