BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482762
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37390.1 | Symbols: NAKR2 | Chloroplast-targeted copper chap... 1267 0.0
> AT2G37390.1 | Symbols: NAKR2 | Chloroplast-targeted copper chaperone
protein | chr2:15694215-15695825 FORWARD LENGTH=1229
Length=1229
Score = 1267 bits (686), Expect = 0.0
Identities = 809/868 (93%), Gaps = 10/868 (1%)
Strand=Plus/Plus
Query 1 ATTTCTTTCAAGTTCTAACAAAAGTTTGGTGTTTTTTACTTTGGTTTCTTACTATCACTT 60
|||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||
Sbjct 6 ATTTCTTTCAAGTTCTAACAAAAGTTTGGT-TTTTTT-TTTTTCTTTCTTATTATCACTT 63
Query 61 CTTCACTCTCTCTTTCTCCATATAATGAAGGGTCGTATGTTTTGCGCTTCGCAAGCATCA 120
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 64 CTTCA--CTCTCTTTCTCCATATAATGAAGGGACGAATGTTTTGCGCTTCGCAAGCATCG 121
Query 121 ACAGCCATATGTTCAAGCATGGATCACGTTCACAAATCAACCACCACCGAAGACGATGAA 180
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 122 ACAGCCATATGTTCAAGCATGGACCACGTTCACAAATCAACCACCACCGACGAAGATGAA 181
Query 181 CCAAGTAGCGGCCGAGCTATAGACCGCCACAATCCGATCATTAAAGATGGCCGAAGATCA 240
| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 182 CGAAACAGCGGCCGAGCTATAGACCGCCACAACCCGATCATTAAAGATGGCCGAAGATCA 241
Query 241 TTCGCCGAGGACTTCATTAAACTACCAGCTTCTGGC-GGAGACGGAGAGATGAGTAACAA 299
||||| || |||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 242 TTCGCTGACGACTTCATTAAACTACCAACTTC-CGCAGAAGACGGAGAGATGAGTAACAA 300
Query 300 AAAACTAGAGATCTATAAAGGCAGGATAAGCATTACTGGCCGGAGAAGCACGGGTGGTGG 359
||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||
Sbjct 301 AAAGCTAGAGATCTATAAAGGCAGGAGAAGCATCACTGGCAGGAGAAGCACGGGCGGTGG 360
Query 360 CGGGGGAGGCGGAGCAGCGGCGTTGTTGAAGCTTATTACCAATGACATTGGCCTAGCGAG 419
||| ||||||||||||||||||||||||||||| || || |||||||||||| |||| ||
Sbjct 361 CGGTGGAGGCGGAGCAGCGGCGTTGTTGAAGCTGATCACTAATGACATTGGCTTAGCAAG 420
Query 420 GAAGAGTTTCAGCTGTGTTGCGAGACCAGCATGTGACTTAATCAAAACCCCTGTGGGTTC 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GAAGAGTTTCAGCTGTGTTGCGAGACCCGCATGTGACTTAATCAAAACCCCTGTGGGTTC 480
Query 480 TACAAGGTATCTTTTGGAATCCGACCCGGATTCTATTTCCGGG-TCTACAGG-TCGGGAT 537
||||||||||||||||| ||| ||||||||||||| || |||| ||| || || ||||
Sbjct 481 TACAAGGTATCTTTTGGGATCGGACCCGGATTCTA-TTACGGGTTCT-GTGGATCAGGAT 538
Query 538 CCGGCTAAGACGGTAGAAACTGAAGCTCCTGCTGGTGAAGACATAACGTTGACGGAGAAG 597
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct 539 CCGGCTAAGACGGTAGAAGCTGAAGCTCCTGCTGGTGAAGACAAAACGTTGACAGAGAAG 598
Query 598 AAGACAACTTGTGGTGGTTCGGACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGC 657
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGACAACTTGTGGTGATACAGACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGC 658
Query 658 AGAGGCTGTGAAGCCAAAGTTAGGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTC 717
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGAGGCTGTGAAGGCAAAGTTAGGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTC 718
Query 718 AACATAGATTTTGCTGCAAAGAAAGTGACTGTGACCGGAGATATCACTCCCTTGGAAATA 777
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 AACATAGATTTTGCTGCAAAGAAAGTGACTGTGACTGGAGATATCACTCCCTTGGAAATA 778
Query 778 TTGGATAGCATCTCAAAGGTTAAAAATGCCCAATTTTGGACAACTCCAACAATCCCAAAG 837
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 TTGGATAGCATTTCAAAGGTTAAAAATGCCCAATTTTGGACAAATCCAACAATCCCAAAG 838
Query 838 CCGAACGTAGAAACCCAAAATCCCTAAT 865
|||||||| ||||| |||||||||||||
Sbjct 839 CCGAACGTGGAAACACAAAATCCCTAAT 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5