BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482764
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37380.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1677 0.0
> AT2G37380.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G39370.1);
Has 1284 Blast hits to 422 proteins in 114 species: Archae
- 0; Bacteria - 90; Metazoa - 125; Fungi - 151; Plants - 136;
Viruses - 0; Other Eukaryotes - 782 (source: NCBI BLink).
| chr2:15686758-15688003 FORWARD LENGTH=1246
Length=1246
Score = 1677 bits (908), Expect = 0.0
Identities = 1095/1181 (93%), Gaps = 30/1181 (3%)
Strand=Plus/Plus
Query 3 AGACAGGGA-TTGGAGGAATCAGAATCAAGAACACATGTTTTGTCCAACGATGGTGATGA 61
||||| ||| ||| | |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 67 AGACATGGATTTGCATGAATCAGAATCAAGAACACATGTTCTGTCCACCGATGGTGATGA 126
Query 62 TGGGTTACATAGACATGGAAGTCAA----tc-tc-tcttcttcttcttctacttcttcct 115
| ||||||||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 127 T-GGTTACATAGACATGGAAGTCAATCTCTCTTCTTCTTCTTCTTCTTCTACTTCGTCCT 185
Query 116 caagcttcttcagcttcCCCGTCACTTCCTCGCCGCCGCAAAGCAGAGAGTTCGAGTTTC 175
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 186 CAAGCTTCTTCAGCTTCCCCGTCACTTCCTCCCCGCCGCAAAGCAGAGAGTTCGAGTTTC 245
Query 176 AAATGTGTTCCTCCGCCGTAGCTTCCGGTGAATCAACGACATCTCCGGCCGATGAGCTTT 235
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 246 AAATGTGTTCCTCCGCCGTAGCTTCCGGTGAATCAACCACATCTCCGGCTGATGAGCTTT 305
Query 236 TCTACAAAGGTCAACTTCTTCCTCTTCATCTCCCTCCTCGTCTCAAAATGGTACAAAAGC 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTACAAAGGTCAACTTCTTCCTCTTCATCTCCCTCCTCGTCTCAAAATGGTACAAAAGC 365
Query 296 TTCTTCTCGCTTCCTCCTCC---ACCGCCGCAACAGAAACTCCTATTTCCCCACGCGCCA 352
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 366 TTCTTCTCGCTTCCTCCTCCTCCACCGCCGCAACGGAAACTCCTATCTCCCCACGCGCCG 425
Query 353 CCG----T--ATCCTCGCCGCGGAGATTCAGTAGCAGTGAGATCGGACAAGACGAGCAAT 406
||| | || || || ||||||||||||||| |||||||||||||||||||| |||
Sbjct 426 CCGCAGATGTATTGTCTCCACGGAGATTCAGTAGCTGTGAGATCGGACAAGACGAG-AAT 484
Query 407 -GTTTCTTTGAGATTTCAACAGAGCTCAAGAGATTCATTGAGAGCAACGAGAATCATCTT 465
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 485 TGTTTCTTTGAGATTTCGACAGAGCTCAAGAGATTCATCGAGAGCAACGAGAATCATCTT 544
Query 466 GGAAACAGTTGGAGCAAAAAGATCAAACATTCATCGATTACACAAAAGCTTAAAGCCTCA 525
||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct 545 GGAAACAGTTGGAGCAAAAAGATCAAACATTCATCCATAACACAAAAACTCAAAGCCTCA 604
Query 526 CGCGCTTACATAAAAGCTCTGTTCTCAAAACAAACCTGCTCAGATTCATCAGAGATCAAT 585
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 605 CGCGCTTACATAAAAGCTCTGTTCTCAAAACAAGCCTGTTCAGATTCATCAGAGATCAAT 664
Query 586 CTAAGATTCAAAATTGAACCTTGTAAAGTCTCAAGAAAGAAGAACCCTTTTATAAACAGT 645
| |||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||
Sbjct 665 CCAAGATTCAAAATTGAACCTTCTAAAGTCTCAAGAAAGAAGAACCCATTTGTGAACAGT 724
Query 646 GAAAAACCTCAATTGTTTCATAGAAGATCCTTCTCTGGTGTGATACAGAGACATTCTCAA 705
|| || |||| || ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 725 GAGAATCCTCTGTTAATTCATAGGAGATCTTTCTCTGGTGTGATACAGAGACATTCTCAA 784
Query 706 GCTAAGTGTTCAACAtcttcttcttcttcttcCTCTGCATCGTCGTTGTCTTCTTCGTTC 765
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 785 GCAAAGTGTTCAACATCTTCTTCTTCTTCTTCCTCTGCGTCTTCGTTGTCTTCTTCGTTC 844
Query 766 AGTTTTGGATCAAACGGGTCTTTGGATCTGCAGACACTGATGAGAAGCAGCAACGCGAGT 825
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 845 AGTTTTGGATCAAACGGGTCGTTGGATCTGCAGACACTGATGAGAAGCAGCAATGCGAGT 904
Query 826 GATAACTCCATTGAAGGAGCGATTGAGCATTGTAAGCAGTCGTTTACTAGTAGGAAGAGC 885
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 905 GATAACTCCATTGAAGGAGCGATCGAGCATTGTAAGCAGTCGTTTACTACTAGGAAGAGT 964
Query 886 AATGTGACTGAATCTGAGCTCTGTTCTTCAAGAACCTCTGTTTCTACTTGTGGTGACCTT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AATGTGACTGAATCTGAGCTCTGTTCTTCAAGAACCTCTGTTTCTACTTGTGGTGACCTT 1024
Query 946 GAAAAAGATTGAAATTCTCAGATCTGTGAAGCGCTCTCT----GATTCTCATTCCAAAAG 1001
|| ||||||||| |||||||||||||||| || |||||| ||||| |||||||||||
Sbjct 1025 GATAAAGATTGAGATTCTCAGATCTGTGACGCTCTCTCTCTCTGATTC-CATTCCAAAAG 1083
Query 1002 GATACaaaaaaaaaaaaaa-aaaaa-tcataaaaaaGATAActtttctcttctactctga 1059
||||||||||||||| | | ||||| | | ||||||||||||||| |||||||||||||
Sbjct 1084 GATACAAAAAAAAAATACATAAAAAGT--TCAAAAAGATAACTTTT-TCTTCTACTCTGA 1140
Query 1060 tttttttacttttgtattttagattcttttgtgtgcttttgtt-tagaagtttgCTGAAT 1118
|||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1141 TTTTTTTATTTTTGTAATTTAGATTCTTTTGTGTGCTTTTGTTGTAGAAGTTTGCTGAAT 1200
Query 1119 TCGAGGTTTCTTTATGTGTTATAAATGTTAATGCTACCAAA 1159
||||||||||||||||||||||||||||||||||||| |||
Sbjct 1201 TCGAGGTTTCTTTATGTGTTATAAATGTTAATGCTACAAAA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5