BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482767
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37678.1 | Symbols: FHY1, PAT3, FRY1 | far-red elongated hyp... 1188 0.0
> AT2G37678.1 | Symbols: FHY1, PAT3, FRY1 | far-red elongated hypocotyl
1 | chr2:15801465-15802793 REVERSE LENGTH=930
Length=930
Score = 1188 bits (643), Expect = 0.0
Identities = 816/892 (91%), Gaps = 41/892 (5%)
Strand=Plus/Plus
Query 1 GACCCTCTGAAAGTGGAAAGAGCATTTTTT-AAAGAGTAATAAGAAAAACAATTATCTTT 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2 GACCCTCTGAAAGTGGAAAGAGCATTTTTTAAAAGAGTAATAAGAAAAACAATTATCTTT 61
Query 60 G-A--------A-ctctctctctctctctGCGATCTATGCCTGAAGTGGAAGTGGATAAC 109
| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GAACTCTCTCTATCTCTCTCTCTCTCTCTGCGATCTATGCCTGAAGTGGAAGTGGATAAC 121
Query 110 AACAACGAGAAGCCATCTGAGATTAACAGTAACATACTAACATTTTCCATCATGATCATA 169
|||||||||||||||||||||||||||||| | | || | || ||||||||||
Sbjct 122 AACAACGAGAAGCCATCTGAGATTAACAGT----T--T-CCA---T-CA-CATGATCATA 169
Query 170 AGTAGTAGTAAAAATGTGTTGAAAATGGAAGAAGAAGTTGAGGTGAGCAAGAAGAGGAAA 229
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 170 AGTAGTAGTAAAAATGTGTTGAAAAT-G--GAAGAAGTTGAGGTGAGCAAGAAGAGGAAA 226
Query 230 TTTCAGACAGATCAATCTGATGAGTTATCATTACTACCTCTTTCCAAGCACGCTTGTTTC 289
||||||||||||||||||||||||||||| ||| ||||||| || || ||| |||||||
Sbjct 227 TTTCAGACAGATCAATCTGATGAGTTATCGTTATTACCTCTGTCAAAACACACTTGTTTT 286
Query 290 GCCAATGTTGCTTGTTCTGACAATACCAATGTTAGCTCGGAGATTGATACAGAGTATTCA 349
||||||||||||||||| || ||||| |||| || |||||||||||||||||||||||||
Sbjct 287 GCCAATGTTGCTTGTTCAGAGAATACAAATGGTAACTCGGAGATTGATACAGAGTATTCA 346
Query 350 ATGTCTT---ATGTGAACTCAACAACTTCTATGGAATGTAACAATGATATTGAGATGAAA 406
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 347 ATGTCTTCTTATGTGAACTCAACAACTTCTATGGAGTGTAACAATGATATAGAGATGAAA 406
Query 407 GAGGAATCATCTGGATCGTGCGGTGAAGACAAGATGATCTCTTTCGAAAGCCATCTAGAT 466
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GAGGAATCATCTGGATCATGCGGTGAAGACAAGATGATCTCTTTCGAAAGCCATCTAGAT 466
Query 467 TACATCTATGGGACTCAGAATCTG-GAGGATTTTTCAGATAAAGTCATTGAAAACATTCT 525
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 467 TACATCTATGGGACTCAGAA-CTTAGAGGATTTTTCAGAGAAAGTCATTGAAAACATTCT 525
Query 526 CTATCTCGATGAACaagaagaagaagaagaag---CTAAAGGATTTAGTAGTAATGCTGC 582
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 526 CTATCTCGATGAACAAGAAGAAGAAGAGGAAGATGCTAAAGGATGTAGTAGTAATGCTGC 585
Query 583 TAAGTTTGTTCTGTCCTCTGGGAGATGGACTGTTAACCAAGATTCTTCTACTATACATGA 642
||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct 586 TAAGTTTGTTCTGTCCTCTGGAAGATGGACTGTTAACCAAGATGATTCTACTCTACATGA 645
Query 643 GCCAAAGAAGCCAACCATTGATCAAGAATTTGAACAATACTTCTCAACACTAATGCTGTG 702
| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 646 GACAAAGAAGCCTACCATTGATCAAGAATTTGAACAATACTTCTCAACGCTAATGCTGTA 705
Query 703 ACATAATGATGTTAAGACTCAAAACATATATGAAGA--T--ATGTACATAGAGCTGTACT 758
||| ||||||||| |||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 706 ACAAAATGATGTTGAGACTCAAAACATATATGAAGAGATGTATGTACATAGAACTGTACT 765
Query 759 CATTCTGTTTTGATTCTTGTCAACCTTAAAA---CGTTCAATTCAAAGTGATTAGAGAGC 815
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 766 CGTTCTGTTTTGATTCTTGTCAACCTTAAAAAAACGTTCAATTCAAAGTGATTAGAGAGC 825
Query 816 TTCTTTGAAATGTTTGTAACTCTAGTCTTCAACTTTCAAGATTTTGATTAGC 867
|||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 826 TTCTTTGAAATGTTTGCAACTCTAGTCTTCAACTTTTAAGATTTTTATTAGC 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5