BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482767 Length=867 Score E Sequences producing significant alignments: (Bits) Value AT2G37678.1 | Symbols: FHY1, PAT3, FRY1 | far-red elongated hyp... 1188 0.0 > AT2G37678.1 | Symbols: FHY1, PAT3, FRY1 | far-red elongated hypocotyl 1 | chr2:15801465-15802793 REVERSE LENGTH=930 Length=930 Score = 1188 bits (643), Expect = 0.0 Identities = 816/892 (91%), Gaps = 41/892 (5%) Strand=Plus/Plus Query 1 GACCCTCTGAAAGTGGAAAGAGCATTTTTT-AAAGAGTAATAAGAAAAACAATTATCTTT 59 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2 GACCCTCTGAAAGTGGAAAGAGCATTTTTTAAAAGAGTAATAAGAAAAACAATTATCTTT 61 Query 60 G-A--------A-ctctctctctctctctGCGATCTATGCCTGAAGTGGAAGTGGATAAC 109 | | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 GAACTCTCTCTATCTCTCTCTCTCTCTCTGCGATCTATGCCTGAAGTGGAAGTGGATAAC 121 Query 110 AACAACGAGAAGCCATCTGAGATTAACAGTAACATACTAACATTTTCCATCATGATCATA 169 |||||||||||||||||||||||||||||| | | || | || |||||||||| Sbjct 122 AACAACGAGAAGCCATCTGAGATTAACAGT----T--T-CCA---T-CA-CATGATCATA 169 Query 170 AGTAGTAGTAAAAATGTGTTGAAAATGGAAGAAGAAGTTGAGGTGAGCAAGAAGAGGAAA 229 |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 170 AGTAGTAGTAAAAATGTGTTGAAAAT-G--GAAGAAGTTGAGGTGAGCAAGAAGAGGAAA 226 Query 230 TTTCAGACAGATCAATCTGATGAGTTATCATTACTACCTCTTTCCAAGCACGCTTGTTTC 289 ||||||||||||||||||||||||||||| ||| ||||||| || || ||| ||||||| Sbjct 227 TTTCAGACAGATCAATCTGATGAGTTATCGTTATTACCTCTGTCAAAACACACTTGTTTT 286 Query 290 GCCAATGTTGCTTGTTCTGACAATACCAATGTTAGCTCGGAGATTGATACAGAGTATTCA 349 ||||||||||||||||| || ||||| |||| || ||||||||||||||||||||||||| Sbjct 287 GCCAATGTTGCTTGTTCAGAGAATACAAATGGTAACTCGGAGATTGATACAGAGTATTCA 346 Query 350 ATGTCTT---ATGTGAACTCAACAACTTCTATGGAATGTAACAATGATATTGAGATGAAA 406 ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 347 ATGTCTTCTTATGTGAACTCAACAACTTCTATGGAGTGTAACAATGATATAGAGATGAAA 406 Query 407 GAGGAATCATCTGGATCGTGCGGTGAAGACAAGATGATCTCTTTCGAAAGCCATCTAGAT 466 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 407 GAGGAATCATCTGGATCATGCGGTGAAGACAAGATGATCTCTTTCGAAAGCCATCTAGAT 466 Query 467 TACATCTATGGGACTCAGAATCTG-GAGGATTTTTCAGATAAAGTCATTGAAAACATTCT 525 |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 467 TACATCTATGGGACTCAGAA-CTTAGAGGATTTTTCAGAGAAAGTCATTGAAAACATTCT 525 Query 526 CTATCTCGATGAACaagaagaagaagaagaag---CTAAAGGATTTAGTAGTAATGCTGC 582 ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| Sbjct 526 CTATCTCGATGAACAAGAAGAAGAAGAGGAAGATGCTAAAGGATGTAGTAGTAATGCTGC 585 Query 583 TAAGTTTGTTCTGTCCTCTGGGAGATGGACTGTTAACCAAGATTCTTCTACTATACATGA 642 ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| Sbjct 586 TAAGTTTGTTCTGTCCTCTGGAAGATGGACTGTTAACCAAGATGATTCTACTCTACATGA 645 Query 643 GCCAAAGAAGCCAACCATTGATCAAGAATTTGAACAATACTTCTCAACACTAATGCTGTG 702 | |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 646 GACAAAGAAGCCTACCATTGATCAAGAATTTGAACAATACTTCTCAACGCTAATGCTGTA 705 Query 703 ACATAATGATGTTAAGACTCAAAACATATATGAAGA--T--ATGTACATAGAGCTGTACT 758 ||| ||||||||| |||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 706 ACAAAATGATGTTGAGACTCAAAACATATATGAAGAGATGTATGTACATAGAACTGTACT 765 Query 759 CATTCTGTTTTGATTCTTGTCAACCTTAAAA---CGTTCAATTCAAAGTGATTAGAGAGC 815 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 766 CGTTCTGTTTTGATTCTTGTCAACCTTAAAAAAACGTTCAATTCAAAGTGATTAGAGAGC 825 Query 816 TTCTTTGAAATGTTTGTAACTCTAGTCTTCAACTTTCAAGATTTTGATTAGC 867 |||||||||||||||| ||||||||||||||||||| |||||||| |||||| Sbjct 826 TTCTTTGAAATGTTTGCAACTCTAGTCTTCAACTTTTAAGATTTTTATTAGC 877 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42297151774 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5