BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482768
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37680.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Vacuolar ... 1271 0.0
AT2G05133.1 | Symbols: | Pseudogene of AT2G37680 | chr2:185169... 246 2e-64
> AT2G37680.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Vacuolar
import/degradation protein Vid24 (InterPro:IPR018618); Has
318 Blast hits to 317 proteins in 131 species: Archae - 0;
Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr2:15803243-15805573
REVERSE LENGTH=963
Length=963
Score = 1271 bits (688), Expect = 0.0
Identities = 747/775 (96%), Gaps = 5/775 (1%)
Strand=Plus/Plus
Query 31 GGAAGAAAATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTG 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 GGAAGAAAATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTG 110
Query 91 ATCCTGGGAATCGATCACCACTTCCGCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTT 150
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 111 ATCCTGGGAATCGATCACCACTTCCCCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTT 170
Query 151 CTGGTACGCAAAATGTTTCTAATCAGCAGAAGGAGGAAGCTTGGAGAGTTAACGTCCAGA 210
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 171 CTGGTACGCAAAATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGA 230
Query 211 TACAGGGAATTGACCTTGAACATGGCTATCTTTGTGGTACCATGGAAGCTCTAAACGTTC 270
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 231 TACAGGGTATTGACCTTGAACATGGTTATCTTTGTGGCACCATGGAAGCTCTAAACGTTC 290
Query 271 CCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATT 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATT 350
Query 331 ATACTTTTTACACCGGAAAATGGGAAGCCACGAGGGAAGATGATATGAGACATTGGTCAA 390
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 351 ATACCTTTTACACCGGAAAATGGGAAGCAACGAGGGAAGATGATATGAGACATTGGTCAA 410
Query 391 AGTTTCCATCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGACGGTGGCAGGCAATTGG 450
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 411 AGTTCCCGTCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGATGGTGGCAGGCAATTGG 470
Query 451 ATCTTAACAACTACCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAATGTTG 510
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 471 ATCTTAACAATTATCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAACGTTG 530
Query 511 GCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGACG 570
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 531 GCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGATG 590
Query 571 GATCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGA 630
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GTTCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGA 650
Query 631 AAACAGTTAACGAAGGAAGGTCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGATGAA 690
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AAACAGTTAACGAAGGAAGATCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGATGAA 710
Query 691 TGCTACCAAAATCATCAGACAGCGCCATATGATACTCTCGTG-AGCACATGCGAAGCACG 749
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 711 TGCTACCAAAATCATCAGACAGCGCCATATGATACTCTCGTCTAA-ACATGCGATGCACG 769
Query 750 TGATCCAGTACATTC-GACGTGTCAATTGTTATAAATTATT-GATAAGATATTTT 802
|||||||||||||| |||||||||||| |||||||||||| | |||||||||||
Sbjct 770 TGATCCAGTACATTATGACGTGTCAATTATTATAAATTATTAG-TAAGATATTTT 823
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 GATTTGGTCGCACCAAAGATCGGATTTTTA 30
||||||||||||||||||||||||||||||
Sbjct 1 GATTTGGTCGCACCAAAGATCGGATTTTTA 30
> AT2G05133.1 | Symbols: | Pseudogene of AT2G37680 | chr2:1851692-1852328
REVERSE LENGTH=585
Length=585
Score = 246 bits (133), Expect = 2e-64
Identities = 200/227 (88%), Gaps = 25/227 (11%)
Strand=Plus/Plus
Query 479 GAGATGGAAAGAGCAATACTTTGTAAATGTTGGCACAGATTGTGGACTAACAATAGCTGG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 GAGATGGAAAGAGCAATACTTTGTAAATGTTGGCACAGATTGTGGACTAACAATAGCTAG 418
Query 539 ATTTTACTACGTATGCTTCTCCTGCAGCGACGGATCCATCAGCG-G---TTTCTATTATG 594
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 419 ATTTTACTACGTATGCTTCTCCTGCAGCGACGGATCCATCAGCGCGCGGTTTCTATTATG 478
Query 595 ATCCAAACAGCAG-T----CC--G-T-TT------------CAGAAGCTGGAGCTGAAAA 633
||||||||||||| | || | | || |||||||||||||||||||
Sbjct 479 ATCCAAACAGCAGGTTAGTCCAAGATCTTGATATTTTGTTTCAGAAGCTGGAGCTGAAAA 538
Query 634 CAGTTAACGAAGGAAGGTCTGGTTTCAGCTTTTCTTCTTACGAGTTG 680
|||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 539 CAGTTAACGAAGGAAGATCTGGTTTCAGCTTTTCTTCTTACGAGTTG 585
Score = 231 bits (125), Expect = 6e-60
Identities = 139/146 (95%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 144 GCATTTTCTGGTACGCAAAATGTTTCTAATCAGCAGAAGGAGGAAGCTTGGAGAGTTAAC 203
||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||
Sbjct 4 GCATTTTCTGGTACGCAAAATGTCTCTAATTAACACAAGGAGGAAGCTTGGAGAGTTAAT 63
Query 204 GTCCAGATACAGGGAATTGACCTTGAACATGGCTATCTTTGTGGTACCATGGAAGCTCTA 263
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 64 GTCCAGATACAGGGAATTGACCTTGAACATGGCTGTCTTTGTGGCACCATGGAAGCTCTA 123
Query 264 AACGTTCCCATGGCAGACACTCCTGT 289
||||||||||||||||||||||||||
Sbjct 124 AACGTTCCCATGGCAGACACTCCTGT 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5