BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482768 Length=802 Score E Sequences producing significant alignments: (Bits) Value AT2G37680.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Vacuolar ... 1271 0.0 AT2G05133.1 | Symbols: | Pseudogene of AT2G37680 | chr2:185169... 246 2e-64 > AT2G37680.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr2:15803243-15805573 REVERSE LENGTH=963 Length=963 Score = 1271 bits (688), Expect = 0.0 Identities = 747/775 (96%), Gaps = 5/775 (1%) Strand=Plus/Plus Query 31 GGAAGAAAATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTG 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51 GGAAGAAAATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTG 110 Query 91 ATCCTGGGAATCGATCACCACTTCCGCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTT 150 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 111 ATCCTGGGAATCGATCACCACTTCCCCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTT 170 Query 151 CTGGTACGCAAAATGTTTCTAATCAGCAGAAGGAGGAAGCTTGGAGAGTTAACGTCCAGA 210 |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 171 CTGGTACGCAAAATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGA 230 Query 211 TACAGGGAATTGACCTTGAACATGGCTATCTTTGTGGTACCATGGAAGCTCTAAACGTTC 270 ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 231 TACAGGGTATTGACCTTGAACATGGTTATCTTTGTGGCACCATGGAAGCTCTAAACGTTC 290 Query 271 CCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATT 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 CCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATT 350 Query 331 ATACTTTTTACACCGGAAAATGGGAAGCCACGAGGGAAGATGATATGAGACATTGGTCAA 390 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 351 ATACCTTTTACACCGGAAAATGGGAAGCAACGAGGGAAGATGATATGAGACATTGGTCAA 410 Query 391 AGTTTCCATCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGACGGTGGCAGGCAATTGG 450 |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 411 AGTTCCCGTCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGATGGTGGCAGGCAATTGG 470 Query 451 ATCTTAACAACTACCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAATGTTG 510 |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 471 ATCTTAACAATTATCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAACGTTG 530 Query 511 GCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGACG 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 531 GCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGATG 590 Query 571 GATCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGA 630 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 GTTCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGA 650 Query 631 AAACAGTTAACGAAGGAAGGTCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGATGAA 690 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 651 AAACAGTTAACGAAGGAAGATCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGATGAA 710 Query 691 TGCTACCAAAATCATCAGACAGCGCCATATGATACTCTCGTG-AGCACATGCGAAGCACG 749 ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct 711 TGCTACCAAAATCATCAGACAGCGCCATATGATACTCTCGTCTAA-ACATGCGATGCACG 769 Query 750 TGATCCAGTACATTC-GACGTGTCAATTGTTATAAATTATT-GATAAGATATTTT 802 |||||||||||||| |||||||||||| |||||||||||| | ||||||||||| Sbjct 770 TGATCCAGTACATTATGACGTGTCAATTATTATAAATTATTAG-TAAGATATTTT 823 Score = 56.5 bits (30), Expect = 4e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1 GATTTGGTCGCACCAAAGATCGGATTTTTA 30 |||||||||||||||||||||||||||||| Sbjct 1 GATTTGGTCGCACCAAAGATCGGATTTTTA 30 > AT2G05133.1 | Symbols: | Pseudogene of AT2G37680 | chr2:1851692-1852328 REVERSE LENGTH=585 Length=585 Score = 246 bits (133), Expect = 2e-64 Identities = 200/227 (88%), Gaps = 25/227 (11%) Strand=Plus/Plus Query 479 GAGATGGAAAGAGCAATACTTTGTAAATGTTGGCACAGATTGTGGACTAACAATAGCTGG 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 359 GAGATGGAAAGAGCAATACTTTGTAAATGTTGGCACAGATTGTGGACTAACAATAGCTAG 418 Query 539 ATTTTACTACGTATGCTTCTCCTGCAGCGACGGATCCATCAGCG-G---TTTCTATTATG 594 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 419 ATTTTACTACGTATGCTTCTCCTGCAGCGACGGATCCATCAGCGCGCGGTTTCTATTATG 478 Query 595 ATCCAAACAGCAG-T----CC--G-T-TT------------CAGAAGCTGGAGCTGAAAA 633 ||||||||||||| | || | | || ||||||||||||||||||| Sbjct 479 ATCCAAACAGCAGGTTAGTCCAAGATCTTGATATTTTGTTTCAGAAGCTGGAGCTGAAAA 538 Query 634 CAGTTAACGAAGGAAGGTCTGGTTTCAGCTTTTCTTCTTACGAGTTG 680 |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 539 CAGTTAACGAAGGAAGATCTGGTTTCAGCTTTTCTTCTTACGAGTTG 585 Score = 231 bits (125), Expect = 6e-60 Identities = 139/146 (95%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 144 GCATTTTCTGGTACGCAAAATGTTTCTAATCAGCAGAAGGAGGAAGCTTGGAGAGTTAAC 203 ||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||| Sbjct 4 GCATTTTCTGGTACGCAAAATGTCTCTAATTAACACAAGGAGGAAGCTTGGAGAGTTAAT 63 Query 204 GTCCAGATACAGGGAATTGACCTTGAACATGGCTATCTTTGTGGTACCATGGAAGCTCTA 263 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 64 GTCCAGATACAGGGAATTGACCTTGAACATGGCTGTCTTTGTGGCACCATGGAAGCTCTA 123 Query 264 AACGTTCCCATGGCAGACACTCCTGT 289 |||||||||||||||||||||||||| Sbjct 124 AACGTTCCCATGGCAGACACTCCTGT 149 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39031932219 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5