BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482774
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37720.1 | Symbols: TBL15 | TRICHOME BIREFRINGENCE-LIKE 15 |... 1657 0.0
AT5G64020.1 | Symbols: TBL14 | TRICHOME BIREFRINGENCE-LIKE 14 |... 1075 0.0
AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein... 119 7e-26
AT3G10282.1 | Symbols: | unknown pseudogene | chr3:3181970-318... 104 2e-21
> AT2G37720.1 | Symbols: TBL15 | TRICHOME BIREFRINGENCE-LIKE 15
| chr2:15818082-15821295 FORWARD LENGTH=1525
Length=1525
Score = 1657 bits (897), Expect = 0.0
Identities = 1092/1187 (92%), Gaps = 10/1187 (1%)
Strand=Plus/Plus
Query 1 GGTGTTCTCTCTAGCATTCAATCTAAGATGTTTGGTGGAAAAAGTTACATACTCAAAGGG 60
|||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 268 GGTGTTATCTGTAGCACTCAATCTAAGATGTATGGTGGAAAAAGTTACATACTCAAAGGG 327
Query 61 AGTGTATCACTTGCCTTGATTATCGTCATTCTTTTGGTGATAACACTCCCGGTTACCG-A 119
|||||||||||| ||||||| ||| ||||||||||||||| |||||||| |||| ||| |
Sbjct 328 AGTGTATCACTTTCCTTGATCATCCTCATTCTTTTGGTGACAACACTCCTGGTTTCCGCA 387
Query 120 GAAAAACCCGCCTCGCATTTCTCTGATTGAAGTaaaaaaaTGTAACGTGGCAAAGGGGAA 179
||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 388 -AAAAACCAGCCTCGCATTTCTCTGATTGAAGTAAAAACTTGTAACTTGGCAAAGGGGGA 446
Query 180 ATGGGTTGAAGATAGGAAGCGACCATTGTATTCTGGTTTTGAATGTAAACAATGGCTATC 239
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 447 ATGGGTTGAAGACAAGAAGCGGCCATTGTATTCTGGTTTTGAATGTAAACAATGGTTATC 506
Query 240 AACCATATTTTCCTGCAGGGTAATGGGCAGACCCGATTTCTCATTTGAGGCTTACGGGTG 299
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 507 AAACATATTTTCCTGCAGGGTAATGGGCAGACCCGACTTCTCATTTGAGGGTTACCGGTG 566
Query 300 GCAGCCAGAAGGTTGCAACATTCCAGAGTTTGACAGAGTCAACTTCTTGAGAAGAATGCA 359
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 567 GCAGCCAGAAGGTTGCAACATACCAGAGTTTAACAGAGTCAACTTCTTGAGAAGAATGCA 626
Query 360 GAACAAGACGATAGCATTTATAGGAGACTCCTTGGGACGGCAACAGTTTCAATCCCTGAT 419
||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 627 GAACAAGACTATAGCATTTATAGGAGACTCCTTGGGAAGGGAACAATTTCAATCCCTGAT 686
Query 420 GTGTATGGCCACTGGAGGTAAAGAGAGGCCAGAGGTTCAAAACGTGGGATGGGAGTACGG 479
||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||
Sbjct 687 GTGTATGGCCACTGGAGGTAAAGAGAGTCCGGAGGTTCAAAACGTGGGATCGGAGTATGG 746
Query 480 TCTGGTGAAACCTAAAGGAGCTCCTCGTCCTGATGGTTGGGCTTATAGGTTCCCGACCAC 539
||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 747 TCTTGTGATACCTAAAGGAGCTCCTCGTCCTGGTGGTTGGGCTTATAGGTTTCCGACCAC 806
Query 540 AAACACAACGATTTTGTTTTATTGGTC-GTCTACTTTAACAGATTTGGTACCGATGAACA 598
|||||||||| |||||| ||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 807 AAACACAACGGTTTTGTCTTATTGGTCAG-CTAGTTTAACAGATTTGGTACCGATGAACA 865
Query 599 ACACAAATCCACCTCCTCTTACTGCAATGCATCTGGACCGACCACCAGCATTCATAAAAA 658
| ||| ||||||||| ||||| |||||||||||| ||||| |||||||||||||||| ||
Sbjct 866 ATACAGATCCACCTCATCTTATTGCAATGCATCTTGACCGTCCACCAGCATTCATAAGAA 925
Query 659 ACTACCTTCACCGTTTCCATGTATTGATTCTAAACACCGGTCACCATTGGAGCAGAGGTG 718
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 926 ACTACCTTCACCGTTTCCATGTATTGGTTCTAAACACCGGTCACCATTGGAGCAGAGATA 985
Query 719 AGATCGAAGAACATCATTGGGTGATGCACGTAAATGGAACACGGGTTC-AAGGCGGATAT 777
|||| ||| || ||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 986 AGATAGAAAAAAATCATTGGGTGATGCACGTAAATGGAACACGTG-TCGAAGGCGGATAT 1044
Query 778 CTCAAGGAGGTCGGAAACGCTAAAGA-TTTTACAATACACAGACTCGTGAAGTGGCTCGA 836
||||| | || | |||||||||| | ||||||||||||||| || ||||||||||| ||
Sbjct 1045 TTCAAGAACGTTGAAAACGCTAAA-ATTTTTACAATACACAGCCTGGTGAAGTGGCTTGA 1103
Query 837 TGCGCAAATTCCGTTGCATCCGCGGTTGAAAGCTTTCTTTACGACGATTTCCCCAAGGCA 896
||| ||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1104 TGCACAACTTCCATTGCATCCACGGTTGAAAGCTTTCTTTACGACGATTTCCCCTAGGCA 1163
Query 897 TGGAAAGTGTAATAATACGGTCCCTTTGTCTAGAGGAAGCAAAATAACAGGCCATGGTGG 956
|| ||||||||| ||||| ||||||||||||||||||||||||| |||||| | |||||
Sbjct 1164 TGAAAAGTGTAACAATACTATCCCTTTGTCTAGAGGAAGCAAAATCACAGGCGAAGGTGG 1223
Query 957 ATCTATGGATACAATAGTCGAGAGTGCTGTGAATGGGACAAAGGTCAAGATTCTTGACAT 1016
||| | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1224 ATCGCTCGATACAATAGTTGAGAGTGCTGTGAATGGGACAAGGGTCAAGATTCTTGACAT 1283
Query 1017 AACTGCACTTTCTGAGCTAAGAGATGAAGCTCATATTGCAGGGTCTAAACTCAAACCGAA 1076
||||||||||||| | |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1284 AACTGCACTTTCTAAACTAAGAGATGAAGCTCATATCGCAGGGTGTAAACTCAAACCGAA 1343
Query 1077 AAAGGCGAGTAACGTGACTTCTA-CTCCAACGATCAACGATTGCTTGCATTGGTGCTTAC 1135
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 1344 AAAGGCGAGTAACGTGACTTC-AGCTCCAACGTTCAACGATTGCTTGCATTGGTGCTTAC 1402
Query 1136 CCGGGATCCCGGATACTTGGAATGAACTTCTCATAGCCCAGCTTTGA 1182
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1403 CCGGGATCCCGGATACTTGGAATGAACTTCTCATAGCACAGCTTTGA 1449
> AT5G64020.1 | Symbols: TBL14 | TRICHOME BIREFRINGENCE-LIKE 14
| chr5:25620308-25622573 REVERSE LENGTH=1683
Length=1683
Score = 1075 bits (582), Expect = 0.0
Identities = 916/1069 (86%), Gaps = 56/1069 (5%)
Strand=Plus/Plus
Query 160 TGTAACGTGGCAAAGGGGAAATGGGTTGAAGATAGGAAGCGACCATTGTATTCTGGTTTT 219
|||||| | |||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 399 TGTAACTTTGCAAAGGGAAAATGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTT 458
Query 220 GAATGTAAACAATGGCTATCAACCATATTTTCCTGCAGGGTAATGGGCAGACCCGATTTC 279
||||||||||||||| ||||| |||| | || || || ||||||||||||||||||||
Sbjct 459 GAATGTAAACAATGGTTATCATCCATGTGGTCATGTAGAATAATGGGCAGACCCGATTTC 518
Query 280 TCATTTGAGGCTTACGGGTGGCAGCCAGAAGGTTGCAACATTCCAGAGTTTGACAGAGTC 339
|||||||||| |||| | ||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 519 TCATTTGAGGGTTACCGTTGGCAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGATTC 578
Query 340 AAC-TTCTTGAGAAGAATGCAGAACAAGACGATAGCATTTATAGGAGACTCCTTGGGACG 398
|| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 579 -ACTTTCTTGACAAGAATGCAGAACAAGACGATAGCATTTATAGGAGACTCATTGGGGCG 637
Query 399 GCAACAGTTTCAATCCCTGATGTGTATGGCCACTGGAGGTAAAGAGAGGCCAGAGGTTCA 458
|||||||||||||||||| ||||||||||||| ||| ||| |||| || |||||||||||
Sbjct 638 GCAACAGTTTCAATCCCTAATGTGTATGGCCAGTGGTGGTGAAGATAGCCCAGAGGTTCA 697
Query 459 AAACGTGGGATGGGAGTACGGTCTGGTGAAA-CCTAAAGGAGCTCCTC-GTCCTGATGGT 516
|||||||||||||||||||||| |||||||| || |||||||||| || |||||||||||
Sbjct 698 AAACGTGGGATGGGAGTACGGTTTGGTGAAAGCC-AAAGGAGCTC-TCCGTCCTGATGGT 755
Query 517 TGGGCTTATAGGTTCCCGACCACAAACACAACGATTTTGTTTTATTGGTC-GTCTA-CTT 574
||||||||| ||||||| ||||||||||| ||||| |||| ||||||||| | ||| |||
Sbjct 756 TGGGCTTATCGGTTCCCAACCACAAACACGACGATCTTGTATTATTGGTCAG-CTAGCTT 814
Query 575 TAACAGATTTGGTACCGATGAACAACACAAATCCACCTCCTCTTACTGCAATGCATCTGG 634
| ||||||||||||| |||||||| ||| |||||||| |||||||||||||||||| |
Sbjct 815 -ATCAGATTTGGTACCCATGAACAATACAGATCCACCTAGTCTTACTGCAATGCATCTAG 873
Query 635 ACCGACCACCAGCATTCATAAAAAACTACCTTCACCGTTTCCATGTATTGATTCTAAACA 694
| || |||||||||||||| | ||||||||||||||||||| |||||||| |||||||||
Sbjct 874 ATCGTCCACCAGCATTCATGAGAAACTACCTTCACCGTTTCGATGTATTGGTTCTAAACA 933
Query 695 CCGGTCACCATTGGAGCAGAGGTGAGATCGAAG-AACATCATTGGGTGATGCACGTAAAT 753
| ||||||||||||| ||||||| |||| |||| || | |||||||||||||| ||||||
Sbjct 934 CTGGTCACCATTGGAACAGAGGTAAGATTGAAGGAA-ACCATTGGGTGATGCATGTAAAT 992
Query 754 GGAACACGGGTTC-AAGGCGGATATCTCAAGGAGGTCGGAAACGCTAAAGATTTTACAAT 812
||||||| ||| | |||||| ||||||||| || || ||||||| || |||||||||||
Sbjct 993 GGAACACAGGT-CGAAGGCGAATATCTCAAAGATATCAGAAACGCCAAGGATTTTACAAT 1051
Query 813 ACACAGAC-TCGTGAAGTGGCTCGATGCGCAAATTCCGTTGCATCCGCGGTTGAAAGCTT 871
|||||| | | | ||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 1052 ACACAG-CGTTGCGAAGTGGCTCGATGCACAGCTTCCATTGCATCCGCGGTTGAAAGCTT 1110
Query 872 TCTTTACGACGATTTC-CC----CA----A-----GGC-AT-GGAA-A--G-TGTAA--T 909
|||||| ||| ||||| || || | || || |||| | | || || |
Sbjct 1111 TCTTTAGGACAATTTCTCCGAGGCATTTTAAAAACGGAGATTGGAATACAGGTGGAAACT 1170
Query 910 --AATA-C--GGTCCCTTTGTCTAGAGGAAGCAAAATAACAGGCCATGGTGGATCTATGG 964
|| | | ||| |||||||||||||| ||| |||| ||||| ||| |||||| || |
Sbjct 1171 GTAACAACACGGTTCCTTTGTCTAGAGGCAGCGAAATCACAGGGGATGATGGATCGATCG 1230
Query 965 ATACAATAGTCGAGAGTGCTGTGAATGGGACAAAGG-TCAAGATTCTTGACATAACTGCA 1023
|| ||| ||| |||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct 1231 ATGCAACAGTTGAGAGTGCTGTGAACGGGACAA-GGATCAAGATTCTTGACATAACTGCA 1289
Query 1024 CTTTCTGAGCTAAGAGATGAAGCTCATAT-TGCAGGGTCTAAACTCAAACC--GAAAA-- 1078
||||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||
Sbjct 1290 CTTTCTGAGCTAAGAGACGAAGCTCATATCT-CAGGGTCTAAACTCAAACCCCGAAAACC 1348
Query 1079 -A-G--G-CGAGTAACGTGACTTCTACTCCAACGATCAACGATTGCTTGCATTGGTGCTT 1133
| | | | ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1349 GAAGAAGGCAAGTAACGTGACCTCAACTCCAACGATCAACGATTGCTTGCATTGGTGCTT 1408
Query 1134 ACCCGGGATCCCGGATACTTGGAATGAACTTCTCATAGCCCAGCTTTGA 1182
||| |||||||| |||||||||||||||||| |||| || ||| |||||
Sbjct 1409 ACCAGGGATCCCAGATACTTGGAATGAACTTTTCATTGCTCAGATTTGA 1457
> AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein,
blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420
68 kDa protein {Cicer arietinum}
| chr2:19200860-19203138 FORWARD LENGTH=2279
Length=2279
Score = 119 bits (64), Expect = 7e-26
Identities = 96/111 (86%), Gaps = 3/111 (3%)
Strand=Plus/Plus
Query 22 TCTAAGATGTTTGGTGG-AAAAAGTTACATACTCAAAGGGAGTGTATCACTTGCCTTGAT 80
||||| |||| |||||| ||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 596 TCTAACATGTCTGGTGGAAAAAAATCACATACTCAGAGGGAGTGTATCACTTGCCTTGAT 655
Query 81 TATCGTCATTCTTTTGGTGA-TAACACTCCCGGTTACCGAGAAAAACCCGC 130
|||| ||||||||||||||| | ||||| |||| | ||| |||||||||
Sbjct 656 TATCCTCATTCTTTTGGTGACTTT-ACTCCTGGTTTCTGAGGAAAACCCGC 705
> AT3G10282.1 | Symbols: | unknown pseudogene | chr3:3181970-3183328
FORWARD LENGTH=638
Length=638
Score = 104 bits (56), Expect = 2e-21
Identities = 101/120 (84%), Gaps = 13/120 (11%)
Strand=Plus/Plus
Query 169 GCAAAGGGGAAATGGGTTGAAGATAGGAAGCGACCATTGTATTCTGGTTTTGAATGTAAA 228
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 412 GCAAAGGGAAAATGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTTGAATGTAAA 471
Query 229 CAATGGCTATCAACCATATTTTCC-TGCAGGGTAATGGGCAGACCCGATTTCTCATTTGA 287
|||||| | || | | | || || || |||||||||||||||||||||||||||
Sbjct 472 CAATGG-T--CATC--T-T---CCATGT-GG--AATGGGCAGACCCGATTTCTCATTTGA 519
Score = 91.6 bits (49), Expect = 2e-17
Identities = 71/82 (87%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 49 ATACTCAAAGGGAGTGTATCACTTGCCTTGATTATCGTCATTCTTTTGGTGATAACACTC 108
||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 244 ATATTCAGAGGGAGTGTATCACTTGCCTTGATTATCATCATTCTTTTGGTGATTTTACTC 303
Query 109 CCGGTTACCGAGAAAAACCCGC 130
| |||| | ||| ||||| |||
Sbjct 304 CTGGTTTCTGAGGAAAACTCGC 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5