BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482777

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37750.1 | Symbols:  | unknown protein; Has 21 Blast hits to...   606    5e-173


> AT2G37750.1 | Symbols:  | unknown protein; Has 21 Blast hits 
to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:15830989-15831558 FORWARD 
LENGTH=570
Length=570

 Score =  606 bits (328),  Expect = 5e-173
 Identities = 418/460 (91%), Gaps = 11/460 (2%)
 Strand=Plus/Plus

Query  1    AACAAGAGAAATGGAGGGTCTAATTCCGTTAGTATACAAAGCCGTCATGCAAATCCGTTA  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  19   AACAAGATAAATGGAGGGTCTAATTCCGTTAGTATACAAAGCCGTCATGCAAATCCGTTA  78

Query  61   CGGTAACGAGTCGGAGCAACTTTCTTCTTCTTACTACGTTCGTCTTCCGGGCGATTCGGG  120
            ||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  79   CGGTAACGAGTCGCAGCAACTTTCTTCTTCTTACTACGTTCGTCTTCCCGGTGATTCGGG  138

Query  121  TCGGTTCGGAAGATCCGATTTCGATGTATCGGGACTTGGATCT--T-CTTCCAATACGGC  177
            |||||| | |||||||||||| ||||||||||| | |||||||  | | ||||||| |||
Sbjct  139  TCGGTTTGTAAGATCCGATTTAGATGTATCGGGTCCTGGATCTAATTCCTCCAATAGGGC  198

Query  178  GTCATCGTCTACGACCACTACTACGTTTGCTGTTTACACGGGAGTCCAATCACCCGTTTC  237
            ||| ||||| || | ||| |||||||||||||||||| |||||||||| ||||| |||||
Sbjct  199  GTCGTCGTCGACAAGCACAACTACGTTTGCTGTTTACGCGGGAGTCCAGTCACCTGTTTC  258

Query  238  TCGTCAGGTTGTCACGTGATTCACACGCGCTTCAC-AAGGAACCTGAAGATGCGTGTGAG  296
            ||||||||||||||||||||||||||||||||    ||||||||||||| ||||||||||
Sbjct  259  TCGTCAGGTTGTCACGTGATTCACACGCGCTTTTTGAAGGAACCTGAAGTTGCGTGTGAG  318

Query  297  GGAAGGGTTCGTGACTTTTGTTTTGTGGGTTTAGTTTTTCTT-TATGCGTTAGGCTTGGA  355
            ||||||||||||||||||||||||||| ||||  ||||| || || |  |||||||||||
Sbjct  319  GGAAGGGTTCGTGACTTTTGTTTTGTGCGTTT--TTTTT-TTGTAAG--TTAGGCTTGGA  373

Query  356  CCGGTTTAATAAACCTGATGTAATAATTCGGTTTGGGAGATTGATTTTCTCTAAGCGTAG  415
            |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct  374  CCGGTTTAATAAACCTGATGTAATAATTCGGTTTGGAAAATTGATTT-CTCTAAGCGTAG  432

Query  416  GCTTTCGCCCAAAAGGGTGGTCTCGTGGCATTTGATTTGT  455
             ||||  |||||||||||||||||||||| ||||||||||
Sbjct  433  ACTTTAACCCAAAAGGGTGGTCTCGTGGCTTTTGATTTGT  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21665399819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5