BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482783
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37770.2 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1657 0.0
AT2G37790.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 669 0.0
> AT2G37770.2 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr2:15834867-15836881 FORWARD LENGTH=1191
Length=1191
Score = 1657 bits (897), Expect = 0.0
Identities = 1008/1062 (95%), Gaps = 6/1062 (1%)
Strand=Plus/Plus
Query 1 CAACCACCACCACATCTTATAATGGCAAATGCGATCACATTCTTCGAGCTCAACACCGGC 60
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1 CAACCACCACCACATCTGATAATGGCAAATGCGATCACATTTTTCAAGCTCAACACCGGC 60
Query 61 GCTAAGTTCCCGTCGGTGGGTCTTGGAACATGGCAAGCTTCTCCTGGCCTTGTTGGCGAT 120
||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 61 GCTAAGTTCCCTTCGGTGGGTCTTGGAACATGGCAAGCTTCTCCTGGCCTCGTCGGTGAT 120
Query 121 GCAGTCGCCGCCGCTATTAAGATTGGCTATCGTCATATAGATTGCGCTCAGATCTATGGC 180
||||||||||| ||| ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 121 GCAGTCGCCGCGGCTGTTAAGATTGGCTATCGTCACATTGATTGTGCTCAGATCTATGGC 180
Query 181 AACGAAAAAGAGATTGGGGCGGTTCTGAAAAAACTGTTTGAAGACAGAGTAGTGAAACGC 240
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AACGAAAAAGAGATTGGGGCAGTTCTGAAAAAATTGTTTGAAGACAGAGTAGTGAAACGC 240
Query 241 GAGGACTTGTTCATCACCTCCAAACTCTGGTGTACTGATCATGACCCTCAAGATGTGCCA 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GAGGATTTGTTCATCACCTCCAAACTCTGGTGTACTGATCATGACCCTCAAGATGTCCCG 300
Query 301 GAGGCATTGAACAGAACTCTAAAGGATCTGCAGCTTGACTACGTCGATCTTTATCTGATG 360
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GAGGCATTGAACAGAACTCTCAAGGATCTGCAGCTTGAATACGTCGATCTTTATCTGATA 360
Query 361 CACTGGCCTGCACGGATGAAGAAAGGTTCCGTTGGAATTAAGCCAGAGAACATTTTGCCT 420
||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 361 CACTGGCCTGCACGGATAAAGAAAGGTTCTGTTGGAATAAAGCCAGAGAACCTTTTGCCT 420
Query 421 GTAGATATTCCTAGTACATGGAAAGCGATGGAAGCACTCTACGATTCGGGCAAGGCACGA 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GTAGATATTCCTAGTACATGGAAAGCGATGGAAGCACTATACGATTCGGGCAAGGCACGA 480
Query 481 GCCATAGGTGTAAGCAATTTCTCCACCAAGAAACTAGCTGATCTCTTGGAGTTAGCTCGT 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCATAGGTGTAAGCAATTTCTCTACCAAGAAACTAGCTGATCTCTTGGAGTTAGCTCGT 540
Query 541 GTTCCTCCTGCTGTTAATCAGGTCGAATGTCATCCTTCTTGGCGACAAACTAAGCTACGA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 GTTCCTCCTGCTGTTAATCAGGTCGAATGTCATCCTTCTTGGCGACAAACTAAGCTACAA 600
Query 601 -AAGTTCTGCAAATCCAAAGGGGTTCACCTCAGTGCATACTCACCATTGGGTTCTCCAGG 659
|| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 601 GAA-TTCTGCAAATCCAAAGGGGTTCACCTAAGTGCATACTCGCCATTAGGTTCTCCAGG 659
Query 660 GACAACGTGGCTGAAGAGCGATGTTTTGAAGAACCCGATACTGAATACGGTTGCAGAAAA 719
|||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 660 GACAACATGGCTGAAGAGCGATGTTTTGAAGAACCCGATACTGAATATGGTTGCGGAAAA 719
Query 720 ACTCGGAAAGAGTCCTGCGCAAGTTGCCCTTCGTTGGGGACTCCAAATGGGTCACAGTGT 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 ACTCGGAAAGAGTCCTGCGCAAGTCGCCCTTCGTTGGGGACTCCAAATGGGTCACAGTGT 779
Query 780 GCTTCCCAAGAGTACCAATGAAGGAAGAATCAAAGAGAACTTTAATGTTTTTGACTGGTC 839
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 780 GCTTCCCAAGAGTACAAATGAAGGAAGGATCAAAGAGAACTTTAATGTTTTCGACTGGTC 839
Query 840 AATACCCGATGACATGTTCGCTAAGTTTTCTGAGATTGAACAGGCAAGGTTAGTCACTGG 899
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 840 AATACCCGATTACATGTTCGCTAAGTTTGCTGAGATTGAACAGGCTAGGTTAGTCACTGG 899
Query 900 TTCTTTCTTTGTTCATGAGACACTGAGCCCTTATAAGTCTATTGAAGAATTATGGGATGG 959
||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 900 TTCCTTCCTTGTTCATGAGACACTAAGCCCTTACAAGTCTATTGAAGAATTATGGGATGG 959
Query 960 CGAGATATGATTTTTAGCTGATCTAAATAATGGGAGGT---TTT-TCTCTCTGATGAACT 1015
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 960 CGAGATATGATTTTTAGCTGATCTAAATAATGGGAGCTAGGTTTCTCTCTCTGATGAACT 1019
Query 1016 TGTCAGTTTCtttttttttttAATGAATGTAAAATTTATTCA 1057
|||||| |||||||||||||||||||||| |||||||||||
Sbjct 1020 AGTCAGTATCTTTTTTTTTTTAATGAATGTTAAATTTATTCA 1061
> AT2G37790.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr2:15838764-15840932 FORWARD LENGTH=1199
Length=1199
Score = 669 bits (362), Expect = 0.0
Identities = 760/949 (80%), Gaps = 39/949 (4%)
Strand=Plus/Plus
Query 39 ATTCTTCGAGCTCAACACCGGCGCTAAGTTCCCGTCGGTGGGTCTTGGAACATGGCAAGC 98
|||||| || ||||||||||| || ||| | || || || ||||| ||||| ||||| ||
Sbjct 92 ATTCTTTGAACTCAACACCGGAGCGAAGATACCATCCGTCGGTCTAGGAACGTGGCAGGC 151
Query 99 TTCTCCTGGCCTTGTTGGCGATGCAGTCGCCGCCGCTATTAAGATTGGCTATCGTCATAT 158
|||||| || || || | || |||| ||| ||| | |||||||| |||||||| ||
Sbjct 152 CGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGATTGGTTATCGTCACAT 211
Query 159 AGATTGCGCTCAGATCTATGGCAACGAAAAAGAGATTGGGGCGGTTCTGAAAAAACTGTT 218
||||| ||||| ||||||||||| ||||||||||||||| || ||||| ||| ||||
Sbjct 212 TGATTGTGCTCAAATCTATGGCAATGAAAAAGAGATTGGGTTAGTCCTGAAGAAATTGTT 271
Query 219 TGAAGACAGAGTAGTGAAACGCGAGGACTTGTTCATCACCTCCAAACTCTGGTGTACTGA 278
||| | |||| || || || ||||| |||||||||| |||||||| ||||||||| |
Sbjct 272 TGATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGGTGTACTTA 331
Query 279 TCATGACCCTCAAGATGTGCCAGAGGCA-TTGAACAGAACTCTAAAGGATCTGCAGCTTG 337
|||||| |||||||| ||||| |||||| || || ||||||||| |||||||||||||||
Sbjct 332 TCATGATCCTCAAGAAGTGCCTGAGGCACTT-AATAGAACTCTACAGGATCTGCAGCTTG 390
Query 338 ACTACGTCGATCTTTATCTGATGCACTGGCCTGC-ACGGATGAAGAAAGGTTCCGTTGGA 396
||||||||||||| ||||| || |||||||||| | | | |||||||| || |||
Sbjct 391 ACTACGTCGATCTGTATCTCATTCACTGGCCTGTTA-GCCTCAAGAAAGGATCTACTGGC 449
Query 397 ATTAAGCCAGAGAACATTTTGCCTG-TAGATATTCCTAGTACATGGAAAGCGATGGAAGC 455
|||| ||||||||||||||||| | ||||||||||| ||||||||||| |||||| |
Sbjct 450 TTTAAACCAGAGAACATTTTGCCAACT-GATATTCCTAGCACATGGAAAGCAATGGAATC 508
Query 456 ACTCTACGATTCGGGCAAGGCACGAGCCATAGGTGTAAGCAATTTCTCCACCAAGAAACT 515
||||| ||||| |||||||| || || || |||||||| ||||||||| | ||||||||
Sbjct 509 ACTCTTTGATTCAGGCAAGGCCCGTGCTATTGGTGTAAGTAATTTCTCCTCAAAGAAACT 568
Query 516 AGCTGATCTCTTGGAGTTAGCTCGTGTTCCTCCTGCTGTTAATCAGGTCGAATGTCATCC 575
|| |||||||||| | | |||||||||||||| |||||||| ||||| || ||||| ||
Sbjct 569 CGCAGATCTCTTGGTGGTGGCTCGTGTTCCTCCCGCTGTTAACCAGGTGGAGTGTCACCC 628
Query 576 TTCTTGGCGACAAA-C-TAAGCT-ACGAAAGTTCTGCAAATCCAAAGGGGTTCA-C-CTC 630
||| |||| ||||| | | ||| | | | ||||||||||| ||||| ||||| | |||
Sbjct 629 TTCATGGCAACAAAACGT--GCTCAGGGAT-TTCTGCAAATCTAAAGGCGTTCATCTCTC 685
Query 631 AGTGCATACTCACCATTGGGTTCTCCAGGGACAACGTGGCTGAA-GAGCGATGTTTTGAA 689
|| | ||||| || |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 686 AGGG--TACTCTCCTTTGGGTTCTCCAGGAACAACGTGGCT-AACGAGCGATGTTTTGAA 742
Query 690 GAACCCGATACT-GAATACG-GTTGCAGAAAAACTCGGAAAGAGTCCTGCGCAAGTTGCC 747
|||||| || || | | | ||||| || || ||||| |||| |||||| || |||||
Sbjct 743 GAACCCTATTCTTGG-TG-GTGTTGCTGAGAAGCTCGGCAAGACTCCTGCACAGGTTGCA 800
Query 748 CTT-CGTTGGGGACTCCAAATGGGTCACAGTGTGCTTCCCAAGAGTACCAATGAAGGA-A 805
|| || ||||| |||||||||||||| ||||| ||||| || || ||| |||||| | |
Sbjct 801 -TTACGCTGGGGTCTCCAAATGGGTCAAAGTGTTCTTCCAAAAAGCACCCATGAAG-ACA 858
Query 806 GAATCAAAGAGAACTTTA-ATGTTTTTGACTGGTCAATACCCGATGACATGTTCGCTAAG 864
| |||||| |||| ||| ||||||| ||||||| |||||||| |||||||| | |||
Sbjct 859 GGATCAAACAGAA-TTTCGATGTTTTCAACTGGTCCATACCCGAAGACATGTTATCCAAG 917
Query 865 TTTTCTGAGATTGAACAGGCAAGGTTAGT-C-ACTGGTTCTT-TC-TTTGTTCATGAGAC 920
||||||||||||| ||||| ||||| || | | || | | || ||||||||||||||
Sbjct 918 TTTTCTGAGATTGGACAGGGTAGGTTGGTGCGA--GG--CATGTCATTTGTTCATGAGAC 973
Query 921 ACTGAGCCCTTATAAGTCTATTGAAGAATTATGGGATGGCGAGATATGA 969
||| || |||||| | |||||||| | ||||| || |||||||||
Sbjct 974 ---GAGTCCATATAAGAGTCTTGAAGAACTCTGGGACGGTGAGATATGA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51841639704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5